Wall clock time and date at job start Tue Mar 31 2020 18:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99838 * 2 1 4 4 O 1.42900 * 109.46831 * 134.99526 * 3 2 1 5 5 C 1.42906 * 113.99734 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46842 * 30.00509 * 5 4 3 7 7 C 1.52997 * 109.47321 * 270.00521 * 5 4 3 8 8 C 1.50697 * 109.46831 * 150.00157 * 5 4 3 9 9 O 1.21277 * 120.00325 * 5.00647 * 8 5 4 10 10 N 1.34774 * 119.99710 * 185.00150 * 8 5 4 11 11 C 1.46505 * 120.00004 * 180.02562 * 10 8 5 12 12 H 1.08998 * 110.63881 * 36.68969 * 11 10 8 13 13 C 1.54330 * 110.71933 * 273.54758 * 11 10 8 14 14 N 1.47019 * 107.26759 * 219.44112 * 13 11 10 15 15 C 1.36947 * 125.64710 * 178.97522 * 14 13 11 16 16 H 1.07994 * 119.99996 * 179.97438 * 15 14 13 17 17 C 1.38808 * 119.99574 * 359.97438 * 15 14 13 18 18 N 1.31622 * 120.00321 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46771 * 90.00348 * 19 17 15 21 21 H 1.48497 * 109.46994 * 210.00181 * 19 17 15 22 22 H 1.48499 * 109.47057 * 330.00608 * 19 17 15 23 23 C 1.47426 * 108.70774 * 358.94165 * 14 13 11 24 24 C 1.54912 * 104.82920 * 24.13041 * 23 14 13 25 25 H 1.09000 * 110.99913 * 204.92184 * 24 23 14 26 26 N 1.46494 * 111.00778 * 81.06311 * 24 23 14 27 27 C 1.35311 * 125.86979 * 332.52037 * 26 24 23 28 28 C 1.35350 * 106.17623 * 179.90186 * 27 26 24 29 29 N 1.33769 * 106.49650 * 0.35254 * 28 27 26 30 30 N 1.28634 * 108.88309 * 359.77289 * 29 28 27 31 31 H 1.07998 * 120.00317 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99613 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.00317 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47103 * 14.99812 * 3 2 1 35 35 H 1.08995 * 109.46761 * 254.99877 * 3 2 1 36 36 H 1.09002 * 109.47153 * 299.99798 * 7 5 4 37 37 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47261 * 59.99970 * 7 5 4 39 39 H 0.96997 * 120.00628 * 0.02562 * 10 8 5 40 40 H 1.08999 * 109.88338 * 338.86097 * 13 11 10 41 41 H 1.09004 * 109.87871 * 99.87224 * 13 11 10 42 42 H 0.97004 * 120.00057 * 179.97438 * 18 17 15 43 43 H 1.09001 * 110.36851 * 142.96516 * 23 14 13 44 44 H 1.08997 * 110.36376 * 265.17944 * 23 14 13 45 45 H 1.08005 * 126.91322 * 0.02562 * 27 26 24 46 46 H 1.08005 * 126.74975 * 180.12285 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2413 0.9528 5 6 3.9083 2.4350 1.0321 6 1 3.2843 3.2948 0.7881 7 6 5.0705 2.3505 0.0407 8 6 4.4505 2.5883 2.4298 9 8 4.2695 1.7133 3.2499 10 7 5.1366 3.6977 2.7685 11 6 5.6642 3.8466 4.1271 12 1 6.0111 2.8875 4.5118 13 6 4.5994 4.4573 5.0625 14 7 5.2899 5.4037 5.9507 15 6 4.6952 6.1706 6.9170 16 1 5.2926 6.8380 7.5203 17 6 3.3246 6.0900 7.1209 18 7 2.5965 5.2762 6.3859 19 14 2.5134 7.1355 8.4395 20 1 2.0992 8.4361 7.8546 21 1 1.3195 6.4276 8.9675 22 1 3.4766 7.3738 9.5443 23 6 6.7287 5.3900 5.6294 24 6 6.8025 4.9004 4.1616 25 1 7.7678 4.4397 3.9516 26 7 6.5318 5.9965 3.2281 27 6 5.7732 7.0872 3.4845 28 6 5.7942 7.8348 2.3564 29 7 6.5482 7.1698 1.4740 30 7 6.9702 6.0848 2.0212 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3855 2.1161 0.2659 35 1 2.4755 1.4868 -0.9926 36 1 5.6945 1.4907 0.2847 37 1 5.6664 3.2612 0.1009 38 1 4.6783 2.2396 -0.9703 39 1 5.2812 4.3977 2.1128 40 1 3.8467 4.9824 4.4744 41 1 4.1274 3.6702 5.6506 42 1 1.6387 5.2196 6.5287 43 1 7.1464 6.3931 5.7162 44 1 7.2578 4.7013 6.2880 45 1 5.2567 7.3163 4.4050 46 1 5.2966 8.7803 2.1984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129482237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:48 Heat of formation + Delta-G solvation = 84.953316 kcal Electronic energy + Delta-G solvation = -30181.642350 eV Core-core repulsion = 26111.165219 eV Total energy + Delta-G solvation = -4070.477131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.97551 -39.92283 -38.39878 -37.36620 -34.23668 -34.14280 -33.46963 -31.86255 -31.20667 -30.54453 -28.81055 -27.59168 -26.36920 -25.05480 -23.96326 -22.60074 -22.22052 -20.89162 -20.30489 -20.14312 -19.78487 -17.88971 -17.31903 -16.96389 -16.92447 -15.89540 -15.65419 -15.55628 -15.12978 -14.66440 -14.48417 -14.29542 -14.08620 -13.95234 -13.53086 -13.19492 -13.11600 -12.93037 -12.51671 -12.48075 -12.36497 -12.30786 -11.82185 -11.57666 -11.39118 -11.33210 -11.12423 -11.05573 -10.85563 -10.66630 -10.56901 -10.25138 -10.13177 -10.00691 -9.79652 -9.66683 -9.25454 -8.98671 -8.85860 -8.71824 -7.16250 -5.92690 -3.32593 1.96597 1.97766 2.60104 2.84206 2.90001 3.02552 3.28006 3.34064 3.36759 3.91880 4.28408 4.48288 4.66505 4.71957 4.81500 4.85399 4.95605 4.99010 5.01872 5.06274 5.15811 5.30233 5.36108 5.42024 5.48866 5.56237 5.59375 5.68888 5.71854 5.77434 5.81820 5.97974 6.04135 6.12628 6.17322 6.39065 6.47140 6.50565 6.53647 6.97878 7.02862 7.28765 7.31649 7.60639 7.68111 7.96175 8.44156 8.83026 8.94202 9.54361 10.13587 11.16998 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.004138 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.568001 B = 6764.693414 C = 8548.665488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.351 6.351 5 C 0.072 3.928 6 H 0.084 0.916 7 C -0.169 4.169 8 C 0.518 3.482 9 O -0.512 6.512 10 N -0.715 5.715 11 C 0.113 3.887 12 H 0.111 0.889 13 C 0.168 3.832 14 N -0.601 5.601 15 C -0.247 4.247 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.912 5.912 19 Si 0.914 3.086 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.128 3.872 24 C 0.114 3.886 25 H 0.120 0.880 26 N -0.276 5.276 27 C -0.004 4.004 28 C -0.076 4.076 29 N -0.278 5.278 30 N -0.112 5.112 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.257 0.743 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.204 0.796 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -2.924 -11.939 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.166 4.166 3 C 0.008 3.992 4 O -0.269 6.269 5 C 0.011 3.989 6 H 0.102 0.898 7 C -0.227 4.227 8 C 0.303 3.697 9 O -0.386 6.386 10 N -0.369 5.369 11 C 0.006 3.994 12 H 0.129 0.871 13 C 0.043 3.957 14 N -0.329 5.329 15 C -0.374 4.374 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.557 5.557 19 Si 0.744 3.256 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.000 4.000 24 C 0.010 3.990 25 H 0.138 0.862 26 N -0.069 5.069 27 C -0.155 4.155 28 C -0.233 4.233 29 N -0.144 5.144 30 N -0.091 5.091 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.221 0.779 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.445 -4.414 -12.228 13.449 hybrid contribution -1.221 1.538 1.188 2.295 sum 2.224 -2.876 -11.040 11.623 Atomic orbital electron populations 1.23837 0.95548 1.02300 1.00061 1.22693 0.95614 0.98074 1.00203 1.21667 0.88825 0.96282 0.92404 1.88071 1.44086 1.34488 1.60295 1.21861 0.94004 0.89596 0.93470 0.89785 1.22230 0.97931 1.03738 0.98797 1.20196 0.78462 0.81966 0.89120 1.90734 1.55915 1.40641 1.51260 1.45775 1.56869 1.21006 1.13284 1.22854 0.94514 0.98512 0.83511 0.87139 1.21639 0.90741 0.92924 0.90432 1.44484 0.99821 1.47795 1.40823 1.18990 0.90620 1.17287 1.10512 0.89891 1.24852 0.96277 0.99117 0.99213 1.69950 1.05922 1.38887 1.40920 0.86106 0.79081 0.79415 0.81022 1.21347 1.21556 1.20523 1.21934 0.89652 1.00072 0.88318 1.23344 1.00185 0.85126 0.90320 0.86202 1.47273 1.32257 1.16687 1.10723 1.24213 0.99270 0.88329 1.03717 1.23548 1.05007 1.03413 0.91301 1.75004 1.12035 1.00946 1.26416 1.78200 1.21435 1.16710 0.92730 0.88372 0.87771 0.86504 0.92527 0.92215 0.91000 0.90692 0.91305 0.76767 0.92443 0.92180 0.93287 0.92252 0.92784 0.77912 0.79856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 14.31 29.01 0.42 -1.29 16 2 C -0.15 -1.61 9.89 -36.02 -0.36 -1.96 16 3 C 0.08 0.98 6.16 36.01 0.22 1.20 16 4 O -0.35 -5.38 9.51 -55.09 -0.52 -5.90 16 5 C 0.07 1.02 3.13 -27.89 -0.09 0.93 16 6 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 7 C -0.17 -1.90 9.48 37.16 0.35 -1.55 16 8 C 0.52 9.19 7.18 -10.99 -0.08 9.12 16 9 O -0.51 -11.21 16.23 -14.30 -0.23 -11.44 16 10 N -0.71 -11.87 5.04 -52.03 -0.26 -12.13 16 11 C 0.11 1.98 3.11 -66.09 -0.21 1.77 16 12 H 0.11 1.95 7.69 -51.93 -0.40 1.55 16 13 C 0.17 3.71 4.74 -3.06 -0.01 3.70 16 14 N -0.60 -12.96 2.23 -170.07 -0.38 -13.34 16 15 C -0.25 -5.98 10.07 -15.06 -0.15 -6.13 16 16 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 17 C 0.00 0.09 5.49 -17.43 -0.10 0.00 16 18 N -0.91 -24.95 10.31 55.49 0.57 -24.38 16 19 Si 0.91 20.46 29.55 -169.99 -5.02 15.43 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 C 0.13 2.14 6.22 -2.53 -0.02 2.13 16 24 C 0.11 1.73 4.06 -65.78 -0.27 1.47 16 25 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 26 N -0.28 -4.39 2.46 -52.68 -0.13 -4.52 16 27 C 0.00 -0.06 10.01 -17.05 -0.17 -0.23 16 28 C -0.08 -1.15 12.05 -17.74 -0.21 -1.37 16 29 N -0.28 -4.62 12.41 30.24 0.38 -4.24 16 30 N -0.11 -1.83 12.18 60.35 0.74 -1.10 16 31 H 0.10 0.86 7.90 -52.49 -0.41 0.44 16 32 H 0.10 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.06 0.63 7.81 -51.93 -0.41 0.22 16 35 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 38 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 39 H 0.40 6.27 6.49 -40.82 -0.26 6.00 16 40 H 0.06 1.43 7.27 -51.93 -0.38 1.05 16 41 H 0.06 1.59 7.50 -51.93 -0.39 1.20 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.06 0.96 7.87 -51.93 -0.41 0.55 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.20 3.69 6.81 -52.48 -0.36 3.33 16 46 H 0.18 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -30.70 382.66 -6.50 -37.21 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.73 Total: 10.87 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.67 Total: 7.78 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.91 Total: -59.71 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.76 Total: -17.34 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.70 -6.50 -37.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129482237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.160 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds