Wall clock time and date at job start Tue Mar 31 2020 19:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46894 * 109.47218 * 2 1 4 4 C 1.46959 * 111.00276 * 66.17635 * 3 2 1 5 5 C 1.53051 * 109.36433 * 183.16836 * 4 3 2 6 6 N 1.46957 * 109.38394 * 301.63201 * 5 4 3 7 7 C 1.40061 * 111.00035 * 183.18091 * 6 5 4 8 8 C 1.38809 * 120.01013 * 299.99659 * 7 6 5 9 9 C 1.38103 * 120.02087 * 179.97438 * 8 7 6 10 10 C 1.38846 * 120.04138 * 0.04986 * 9 8 7 11 11 N 1.40139 * 119.99369 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99921 * 33.31280 * 11 10 9 13 13 O 1.21297 * 119.99773 * 5.27987 * 12 11 10 14 14 C 1.50699 * 120.00197 * 185.27844 * 12 11 10 15 15 C 1.50695 * 109.47332 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99868 * 359.97438 * 15 14 12 17 17 C 1.37885 * 120.00169 * 180.02562 * 15 14 12 18 18 N 1.31508 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47416 * 119.99736 * 19 17 15 22 22 H 1.48501 * 109.47177 * 239.99702 * 19 17 15 23 23 C 1.38848 * 120.01971 * 359.96865 * 10 9 8 24 24 C 1.38234 * 119.98077 * 359.73095 * 23 10 9 25 25 F 1.35101 * 120.02352 * 180.29819 * 24 23 10 26 26 C 1.46951 * 110.88264 * 59.30639 * 6 5 4 27 27 C 1.46957 * 111.00054 * 190.00032 * 3 2 1 28 28 H 1.09002 * 109.46799 * 60.00474 * 1 2 3 29 29 H 1.08996 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46978 * 300.00472 * 1 2 3 31 31 H 1.09000 * 109.47294 * 239.99104 * 2 1 3 32 32 H 1.09002 * 109.46799 * 119.99526 * 2 1 3 33 33 H 1.09000 * 109.47102 * 63.21114 * 4 3 2 34 34 H 1.09001 * 109.50226 * 303.14284 * 4 3 2 35 35 H 1.08998 * 109.48534 * 181.64787 * 5 4 3 36 36 H 1.09004 * 109.48660 * 61.61155 * 5 4 3 37 37 H 1.08003 * 119.98800 * 359.97438 * 8 7 6 38 38 H 1.08001 * 119.97994 * 180.02562 * 9 8 7 39 39 H 0.96995 * 120.00282 * 213.31990 * 11 10 9 40 40 H 1.09000 * 109.47145 * 300.00068 * 14 12 11 41 41 H 1.08995 * 109.47228 * 59.99990 * 14 12 11 42 42 H 0.97004 * 120.00158 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.01135 * 180.02562 * 23 10 9 44 44 H 1.09010 * 109.48704 * 60.64846 * 26 6 5 45 45 H 1.08997 * 109.49439 * 180.69399 * 26 6 5 46 46 H 1.08998 * 109.49485 * 56.84045 * 27 3 2 47 47 H 1.09001 * 109.50429 * 296.78804 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6728 2.0662 1.2551 5 6 2.1296 3.5252 1.1835 6 7 3.5790 3.5714 0.9453 7 6 4.0459 4.8919 0.9453 8 6 3.5490 5.8040 0.0244 9 6 4.0088 7.1062 0.0246 10 6 4.9692 7.5041 0.9449 11 7 5.4355 8.8257 0.9438 12 6 4.6051 9.8329 0.6085 13 8 3.4315 9.6078 0.4010 14 6 5.1348 11.2389 0.4915 15 6 4.0122 12.1685 0.1087 16 1 3.0149 11.7799 -0.0359 17 6 4.2584 13.5149 -0.0580 18 7 5.4729 13.9879 0.1175 19 14 2.8667 14.6672 -0.5319 20 1 1.6071 13.8925 -0.6676 21 1 2.7009 15.7021 0.5202 22 1 3.1857 15.3230 -1.8254 23 6 5.4678 6.5931 1.8665 24 6 5.0036 5.2910 1.8712 25 9 5.4837 4.4054 2.7715 26 6 3.9255 2.8902 -0.3099 27 6 3.4691 1.4311 -0.2382 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1709 1.5696 2.0878 34 1 0.5934 2.0300 1.4025 35 1 1.8996 4.0248 2.1246 36 1 1.6108 4.0291 0.3680 37 1 2.8024 5.4951 -0.6924 38 1 3.6213 7.8154 -0.6919 39 1 6.3558 9.0155 1.1842 40 1 5.5535 11.5503 1.4485 41 1 5.9112 11.2722 -0.2727 42 1 5.6462 14.9350 -0.0002 43 1 6.2145 6.9029 2.5826 44 1 3.4271 3.3866 -1.1426 45 1 5.0048 2.9271 -0.4579 46 1 3.6991 0.9315 -1.1793 47 1 3.9882 0.9273 0.5772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:43 Heat of formation + Delta-G solvation = -39.571157 kcal Electronic energy + Delta-G solvation = -28449.425298 eV Core-core repulsion = 24353.628419 eV Total energy + Delta-G solvation = -4095.796879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.70697 -40.44555 -39.58348 -37.98153 -36.03882 -33.81347 -33.05563 -31.59090 -31.06695 -30.53863 -29.46594 -28.10171 -25.79962 -24.01441 -23.76143 -23.11877 -22.23753 -21.62356 -19.94763 -19.84501 -18.01179 -17.33713 -16.72653 -16.29537 -15.87961 -15.84134 -15.60556 -15.45744 -15.19465 -14.96854 -14.85793 -14.53150 -14.40653 -14.33746 -13.97054 -13.64577 -13.09078 -12.89043 -12.81056 -12.50364 -12.43208 -12.23577 -12.20960 -12.03259 -11.62794 -11.58312 -11.51163 -11.34056 -11.02699 -10.91955 -10.83568 -10.75601 -10.06052 -9.92908 -9.38004 -8.99276 -8.79771 -8.73311 -8.58527 -8.53161 -7.86243 -6.15439 -4.15966 1.12665 1.26456 3.25506 3.28400 3.35335 3.38868 3.45946 3.51454 3.60239 3.77813 4.38454 4.43065 4.54355 4.58361 4.80740 4.81071 4.87028 5.06108 5.07605 5.10579 5.16507 5.19015 5.23302 5.24903 5.33479 5.40207 5.43266 5.48815 5.57959 5.62678 5.63864 5.71220 5.78214 5.87799 5.96594 6.13863 6.34758 6.39294 6.55434 6.59950 6.70483 6.79411 6.92914 7.03424 7.16068 7.28829 7.75226 7.87929 8.19744 8.87492 8.95169 9.49696 10.96736 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.002183 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.920575 B =12826.050206 C =13773.837542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.056 3.944 5 C 0.061 3.939 6 N -0.495 5.495 7 C 0.017 3.983 8 C -0.096 4.096 9 C -0.126 4.126 10 C 0.198 3.802 11 N -0.690 5.690 12 C 0.515 3.485 13 O -0.519 6.519 14 C 0.006 3.994 15 C -0.512 4.512 16 H 0.077 0.923 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.902 3.098 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.193 4.193 24 C 0.145 3.855 25 F -0.131 7.131 26 C 0.062 3.938 27 C 0.058 3.942 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.129 0.871 38 H 0.144 0.856 39 H 0.410 0.590 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.262 0.738 43 H 0.139 0.861 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -26.625 0.962 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.267 5.267 4 C -0.072 4.072 5 C -0.066 4.066 6 N -0.217 5.217 7 C -0.079 4.079 8 C -0.116 4.116 9 C -0.148 4.148 10 C 0.101 3.899 11 N -0.336 5.336 12 C 0.307 3.693 13 O -0.392 6.392 14 C -0.033 4.033 15 C -0.550 4.550 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.215 4.215 24 C 0.124 3.876 25 F -0.109 7.109 26 C -0.065 4.065 27 C -0.070 4.070 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.162 0.838 39 H 0.246 0.754 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.157 0.843 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.733 -26.564 0.810 26.717 hybrid contribution 0.027 0.660 0.148 0.677 sum -2.707 -25.904 0.958 26.063 Atomic orbital electron populations 1.21804 0.94785 1.01534 1.02603 1.22053 0.96190 0.88669 1.00750 1.62193 1.13873 1.15816 1.34798 1.22215 1.00737 0.93838 0.90405 1.22248 0.86295 0.96254 1.01828 1.59716 1.14487 1.12321 1.35179 1.18543 1.00425 0.90225 0.98666 1.21328 0.99254 0.92985 0.98054 1.21193 0.98524 0.95874 0.99169 1.17657 0.94863 0.84752 0.92631 1.44303 1.15672 1.03823 1.69765 1.22394 0.85880 0.87945 0.73131 1.90570 1.17074 1.84449 1.47154 1.19298 0.99023 0.85080 0.99869 1.21160 0.95543 0.91585 1.46749 0.90516 1.25010 0.95980 0.98288 0.95271 1.69955 1.19833 1.14243 1.49750 0.86351 0.82268 0.80376 0.78011 1.19442 1.20935 1.20939 1.20758 1.06514 0.92374 1.01837 1.17097 0.95090 0.86469 0.88951 1.91477 1.86584 1.67721 1.65135 1.22227 1.00868 0.93501 0.89895 1.22156 0.87403 0.96283 1.01145 0.91788 0.92327 0.92612 0.90809 0.94889 0.93896 0.89833 0.90005 0.93224 0.85271 0.83842 0.75367 0.92997 0.92837 0.92804 0.84296 0.93290 0.90059 0.90124 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.85 37.16 0.37 -0.57 16 2 C 0.05 0.36 5.68 -3.83 -0.02 0.34 16 3 N -0.54 -4.73 4.71 -234.46 -1.10 -5.84 16 4 C 0.06 0.50 5.41 -3.77 -0.02 0.48 16 5 C 0.06 0.64 5.31 -3.77 -0.02 0.62 16 6 N -0.50 -5.77 4.52 -170.82 -0.77 -6.54 16 7 C 0.02 0.22 4.74 -83.58 -0.40 -0.17 16 8 C -0.10 -1.28 8.64 -39.42 -0.34 -1.63 16 9 C -0.13 -2.00 8.65 -39.41 -0.34 -2.34 16 10 C 0.20 3.07 6.28 -83.61 -0.53 2.54 16 11 N -0.69 -11.26 5.35 -9.82 -0.05 -11.31 16 12 C 0.51 10.92 7.56 -10.99 -0.08 10.83 16 13 O -0.52 -12.51 13.15 5.54 0.07 -12.44 16 14 C 0.01 0.15 5.46 -29.04 -0.16 0.00 16 15 C -0.51 -14.23 8.92 -34.44 -0.31 -14.53 16 16 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.19 -2.61 9.93 -39.36 -0.39 -3.01 16 24 C 0.14 2.00 7.31 -39.28 -0.29 1.71 16 25 F -0.13 -1.85 17.07 2.25 0.04 -1.81 16 26 C 0.06 0.62 5.36 -3.77 -0.02 0.60 16 27 C 0.06 0.50 5.61 -3.77 -0.02 0.48 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.35 6.49 -51.93 -0.34 0.02 16 31 H 0.07 0.47 8.03 -51.93 -0.42 0.05 16 32 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.66 6.34 -51.93 -0.33 0.33 16 35 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.05 0.54 7.24 -51.93 -0.38 0.17 16 37 H 0.13 1.55 7.06 -52.48 -0.37 1.18 16 38 H 0.14 2.56 6.41 -52.49 -0.34 2.22 16 39 H 0.41 5.39 8.82 -40.82 -0.36 5.03 16 40 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.05 0.50 7.45 -51.92 -0.39 0.12 16 45 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 46 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -30.94 381.36 -10.07 -41.01 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.05 Total: 2.64 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.66 Total: -3.19 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.19 Total: -48.48 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.94 -10.07 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.438 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds