Wall clock time and date at job start Tue Mar 31 2020 19:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46894 * 109.47218 * 2 1 4 4 C 1.46959 * 111.00276 * 66.17635 * 3 2 1 5 5 C 1.53051 * 109.36433 * 183.16836 * 4 3 2 6 6 N 1.46957 * 109.38394 * 301.63201 * 5 4 3 7 7 C 1.40061 * 111.00035 * 183.18091 * 6 5 4 8 8 C 1.38809 * 120.01013 * 299.99659 * 7 6 5 9 9 C 1.38103 * 120.02087 * 179.97438 * 8 7 6 10 10 C 1.38846 * 120.04138 * 0.04986 * 9 8 7 11 11 N 1.40139 * 119.99369 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99921 * 33.31280 * 11 10 9 13 13 O 1.21297 * 119.99773 * 5.27987 * 12 11 10 14 14 C 1.50699 * 120.00197 * 185.27844 * 12 11 10 15 15 C 1.50695 * 109.47332 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99868 * 359.97438 * 15 14 12 17 17 C 1.37885 * 120.00169 * 180.02562 * 15 14 12 18 18 N 1.31508 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47416 * 119.99736 * 19 17 15 22 22 H 1.48501 * 109.47177 * 239.99702 * 19 17 15 23 23 C 1.38848 * 120.01971 * 359.96865 * 10 9 8 24 24 C 1.38234 * 119.98077 * 359.73095 * 23 10 9 25 25 F 1.35101 * 120.02352 * 180.29819 * 24 23 10 26 26 C 1.46951 * 110.88264 * 59.30639 * 6 5 4 27 27 C 1.46957 * 111.00054 * 190.00032 * 3 2 1 28 28 H 1.09002 * 109.46799 * 60.00474 * 1 2 3 29 29 H 1.08996 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46978 * 300.00472 * 1 2 3 31 31 H 1.09000 * 109.47294 * 239.99104 * 2 1 3 32 32 H 1.09002 * 109.46799 * 119.99526 * 2 1 3 33 33 H 1.09000 * 109.47102 * 63.21114 * 4 3 2 34 34 H 1.09001 * 109.50226 * 303.14284 * 4 3 2 35 35 H 1.08998 * 109.48534 * 181.64787 * 5 4 3 36 36 H 1.09004 * 109.48660 * 61.61155 * 5 4 3 37 37 H 1.08003 * 119.98800 * 359.97438 * 8 7 6 38 38 H 1.08001 * 119.97994 * 180.02562 * 9 8 7 39 39 H 0.96995 * 120.00282 * 213.31990 * 11 10 9 40 40 H 1.09000 * 109.47145 * 300.00068 * 14 12 11 41 41 H 1.08995 * 109.47228 * 59.99990 * 14 12 11 42 42 H 0.97004 * 120.00158 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.01135 * 180.02562 * 23 10 9 44 44 H 1.09010 * 109.48704 * 60.64846 * 26 6 5 45 45 H 1.08997 * 109.49439 * 180.69399 * 26 6 5 46 46 H 1.08998 * 109.49485 * 56.84045 * 27 3 2 47 47 H 1.09001 * 109.50429 * 296.78804 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6728 2.0662 1.2551 5 6 2.1296 3.5252 1.1835 6 7 3.5790 3.5714 0.9453 7 6 4.0459 4.8919 0.9453 8 6 3.5490 5.8040 0.0244 9 6 4.0088 7.1062 0.0246 10 6 4.9692 7.5041 0.9449 11 7 5.4355 8.8257 0.9438 12 6 4.6051 9.8329 0.6085 13 8 3.4315 9.6078 0.4010 14 6 5.1348 11.2389 0.4915 15 6 4.0122 12.1685 0.1087 16 1 3.0149 11.7799 -0.0359 17 6 4.2584 13.5149 -0.0580 18 7 5.4729 13.9879 0.1175 19 14 2.8667 14.6672 -0.5319 20 1 1.6071 13.8925 -0.6676 21 1 2.7009 15.7021 0.5202 22 1 3.1857 15.3230 -1.8254 23 6 5.4678 6.5931 1.8665 24 6 5.0036 5.2910 1.8712 25 9 5.4837 4.4054 2.7715 26 6 3.9255 2.8902 -0.3099 27 6 3.4691 1.4311 -0.2382 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1709 1.5696 2.0878 34 1 0.5934 2.0300 1.4025 35 1 1.8996 4.0248 2.1246 36 1 1.6108 4.0291 0.3680 37 1 2.8024 5.4951 -0.6924 38 1 3.6213 7.8154 -0.6919 39 1 6.3558 9.0155 1.1842 40 1 5.5535 11.5503 1.4485 41 1 5.9112 11.2722 -0.2727 42 1 5.6462 14.9350 -0.0002 43 1 6.2145 6.9029 2.5826 44 1 3.4271 3.3866 -1.1426 45 1 5.0048 2.9271 -0.4579 46 1 3.6991 0.9315 -1.1793 47 1 3.9882 0.9273 0.5772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:42 Heat of formation + Delta-G solvation = -59.369453 kcal Electronic energy + Delta-G solvation = -28450.283817 eV Core-core repulsion = 24353.628419 eV Total energy + Delta-G solvation = -4096.655397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.82588 -41.62675 -40.74565 -39.13783 -37.06202 -35.14034 -35.10020 -32.36712 -31.89778 -31.68708 -31.13057 -29.29814 -26.82397 -25.61176 -24.70918 -24.23150 -23.29539 -22.47104 -21.35563 -20.75413 -19.27634 -18.54790 -18.23669 -17.98407 -17.17465 -16.82979 -16.61423 -16.55056 -16.33370 -16.17833 -15.93398 -15.85549 -15.58047 -15.20514 -14.93617 -14.83292 -14.51582 -14.24060 -13.95156 -13.78174 -13.56171 -13.30221 -13.22979 -12.89152 -12.84326 -12.78486 -12.61406 -12.57114 -12.30262 -12.22010 -12.07403 -11.74354 -11.60953 -11.45830 -11.24845 -10.66572 -10.63760 -9.91467 -9.66770 -9.31342 -9.11149 -8.27063 -6.33985 -0.03980 0.11646 1.39571 1.41282 1.54943 1.69144 2.04622 2.42898 2.52776 2.62183 2.89427 3.09156 3.27800 3.68900 3.81523 3.96368 4.05495 4.08934 4.11177 4.15181 4.26723 4.27313 4.37693 4.45043 4.50085 4.53441 4.61083 4.63843 4.76603 4.83007 4.86045 4.90543 5.00465 5.02132 5.03002 5.11980 5.17499 5.22128 5.23491 5.36892 5.37265 5.67058 5.74532 5.79421 6.00255 6.06499 6.07736 6.25191 6.52643 6.79330 7.24232 7.37501 8.84970 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.002183 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.920575 B =12826.050206 C =13773.837542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.550 5.550 4 C 0.062 3.938 5 C 0.060 3.940 6 N -0.502 5.502 7 C 0.030 3.970 8 C -0.090 4.090 9 C -0.138 4.138 10 C 0.176 3.824 11 N -0.670 5.670 12 C 0.523 3.477 13 O -0.554 6.554 14 C 0.010 3.990 15 C -0.536 4.536 16 H 0.057 0.943 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.175 4.175 24 C 0.137 3.863 25 F -0.131 7.131 26 C 0.061 3.939 27 C 0.063 3.937 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.426 0.574 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.267 0.733 43 H 0.163 0.837 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -28.226 1.108 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.276 5.276 4 C -0.066 4.066 5 C -0.067 4.067 6 N -0.224 5.224 7 C -0.066 4.066 8 C -0.110 4.110 9 C -0.160 4.160 10 C 0.080 3.920 11 N -0.317 5.317 12 C 0.314 3.686 13 O -0.431 6.431 14 C -0.030 4.030 15 C -0.574 4.574 16 H 0.075 0.925 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.788 3.212 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.197 4.197 24 C 0.116 3.884 25 F -0.109 7.109 26 C -0.065 4.065 27 C -0.065 4.065 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.160 0.840 38 H 0.137 0.863 39 H 0.265 0.735 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.180 0.820 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.831 -28.208 0.968 28.367 hybrid contribution 0.088 1.012 0.112 1.022 sum -2.744 -27.197 1.079 27.356 Atomic orbital electron populations 1.21780 0.94216 1.02284 1.02114 1.22111 0.96626 0.87670 1.01230 1.62223 1.13920 1.16945 1.34487 1.22148 1.01311 0.92630 0.90474 1.22275 0.85575 0.97463 1.01362 1.59828 1.15166 1.11235 1.36191 1.18674 0.99416 0.90881 0.97612 1.21361 0.99265 0.92053 0.98353 1.21105 0.99133 0.96436 0.99276 1.17693 0.96009 0.84331 0.93948 1.43801 1.15816 1.03508 1.68593 1.21745 0.85616 0.87983 0.73277 1.90555 1.18495 1.84910 1.49108 1.19117 0.97856 0.86584 0.99424 1.21372 0.95803 0.92831 1.47421 0.92456 1.25753 0.98300 0.99625 0.95107 1.70020 1.21193 1.14836 1.50158 0.85425 0.79166 0.78399 0.78229 1.19951 1.19930 1.19872 1.20853 1.06016 0.91719 1.01109 1.17190 0.95434 0.86587 0.89190 1.91480 1.86606 1.67680 1.65141 1.22289 1.01061 0.94269 0.88911 1.22139 0.87348 0.95182 1.01863 0.92491 0.91011 0.92821 0.89915 0.94772 0.94412 0.88698 0.90517 0.93646 0.84032 0.86268 0.73475 0.93235 0.93132 0.92365 0.81957 0.93544 0.89847 0.88437 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.85 71.98 0.71 -0.84 16 2 C 0.05 0.61 5.68 86.31 0.49 1.10 16 3 N -0.55 -8.60 4.71 -895.71 -4.22 -12.82 16 4 C 0.06 1.03 5.41 86.31 0.47 1.50 16 5 C 0.06 1.20 5.31 86.31 0.46 1.66 16 6 N -0.50 -11.01 4.52 -694.34 -3.14 -14.15 16 7 C 0.03 0.75 4.74 38.16 0.18 0.93 16 8 C -0.09 -2.37 8.64 22.37 0.19 -2.17 16 9 C -0.14 -4.40 8.65 22.38 0.19 -4.21 16 10 C 0.18 5.36 6.28 38.10 0.24 5.59 16 11 N -0.67 -21.70 5.35 -303.37 -1.62 -23.32 16 12 C 0.52 22.58 7.56 87.66 0.66 23.24 16 13 O -0.55 -27.52 13.15 -3.08 -0.04 -27.56 16 14 C 0.01 0.47 5.46 29.10 0.16 0.62 16 15 C -0.54 -30.41 8.92 25.60 0.23 -30.18 16 16 H 0.06 3.43 6.75 -2.91 -0.02 3.41 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.92 -52.46 13.29 21.45 0.28 -52.18 16 19 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.18 -4.47 9.93 22.41 0.22 -4.24 16 24 C 0.14 3.55 7.31 22.47 0.16 3.72 16 25 F -0.13 -3.44 17.07 44.97 0.77 -2.67 16 26 C 0.06 1.13 5.36 86.31 0.46 1.59 16 27 C 0.06 0.96 5.61 86.31 0.48 1.44 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.58 6.49 -2.39 -0.02 0.57 16 31 H 0.08 0.85 8.03 -2.39 -0.02 0.83 16 32 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.34 6.34 -2.39 -0.02 1.33 16 35 H 0.08 1.60 8.13 -2.39 -0.02 1.58 16 36 H 0.05 0.95 7.24 -2.39 -0.02 0.93 16 37 H 0.14 3.32 7.06 -2.91 -0.02 3.30 16 38 H 0.12 4.43 6.41 -2.91 -0.02 4.41 16 39 H 0.43 10.79 8.82 -92.71 -0.82 9.97 16 40 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.05 0.89 7.45 -2.38 -0.02 0.87 16 45 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 46 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 47 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -66.05 381.36 0.01 -66.04 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.17 Total: 19.48 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.78 Total: 0.82 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -8.69 Total: -102.47 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.04 Total: -27.56 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.77 Total: -2.67 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.05 0.01 -66.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.668 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds