Wall clock time and date at job start Tue Mar 31 2020 18:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47192 * 2 1 4 4 C 1.50703 * 109.47032 * 119.99609 * 2 1 3 5 5 O 1.21279 * 119.99848 * 88.85504 * 4 2 1 6 6 N 1.34774 * 120.00265 * 268.84564 * 4 2 1 7 7 C 1.47416 * 125.65064 * 174.54250 * 6 4 2 8 8 C 1.54917 * 104.83242 * 156.14153 * 7 6 4 9 9 C 1.55149 * 101.57993 * 37.01032 * 8 7 6 10 10 H 1.09003 * 110.71724 * 82.86310 * 9 8 7 11 11 N 1.46902 * 110.87434 * 206.06279 * 9 8 7 12 12 C 1.46900 * 110.99970 * 268.61494 * 11 9 8 13 13 C 1.50696 * 109.47163 * 179.97438 * 12 11 9 14 14 O 1.21296 * 120.00156 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00437 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00567 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99861 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00280 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47102 * 60.00073 * 20 18 16 22 22 H 1.48502 * 109.47124 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47418 * 299.99713 * 20 18 16 24 24 C 1.47021 * 125.64532 * 354.85906 * 6 4 2 25 25 N 1.46503 * 109.47225 * 239.99733 * 2 1 3 26 26 C 1.34947 * 126.03548 * 324.99778 * 25 2 1 27 27 C 1.35312 * 107.74791 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.91772 * 0.02562 * 27 26 25 29 29 N 1.30833 * 108.20086 * 359.73622 * 28 27 26 30 30 H 1.09002 * 109.47039 * 298.76095 * 1 2 3 31 31 H 1.08992 * 109.47231 * 58.76197 * 1 2 3 32 32 H 1.09004 * 109.46718 * 178.76324 * 1 2 3 33 33 H 1.09001 * 110.37266 * 274.98263 * 7 6 4 34 34 H 1.09005 * 110.36799 * 37.30521 * 7 6 4 35 35 H 1.08998 * 111.00160 * 278.93753 * 8 7 6 36 36 H 1.09001 * 111.03653 * 155.10387 * 8 7 6 37 37 H 1.00900 * 110.99918 * 144.65772 * 11 9 8 38 38 H 1.09005 * 109.47155 * 299.99589 * 12 11 9 39 39 H 1.08996 * 109.47475 * 59.99555 * 12 11 9 40 40 H 0.97003 * 119.99512 * 359.97438 * 15 13 12 41 41 H 0.96998 * 120.00425 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88357 * 300.20884 * 24 6 4 43 43 H 1.09000 * 109.88351 * 61.22071 * 24 6 4 44 44 H 1.08004 * 126.12972 * 359.96123 * 26 25 2 45 45 H 1.07995 * 126.04547 * 179.97438 * 27 26 25 46 46 H 1.08002 * 125.89769 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.2147 -1.9091 1.2067 6 7 2.2792 -0.0135 2.3574 7 6 2.6620 -0.5912 3.6585 8 6 3.4030 0.5512 4.3971 9 6 2.5867 1.7924 3.9495 10 1 1.6947 1.9097 4.5649 11 7 3.4121 3.0067 3.9971 12 6 3.2941 3.6726 5.3012 13 6 4.1530 4.9107 5.3125 14 8 4.8003 5.2089 4.3309 15 7 4.2030 5.6863 6.4136 16 6 4.9840 6.8130 6.4237 17 1 5.5597 7.0789 5.5494 18 6 5.0350 7.6129 7.5587 19 7 4.3342 7.2897 8.6223 20 14 6.0998 9.1476 7.5727 21 1 5.6491 10.0726 6.5019 22 1 5.9801 9.8212 8.8908 23 1 7.5163 8.7696 7.3364 24 6 2.2048 1.4485 2.4943 25 7 2.0184 -0.6907 -1.1961 26 6 1.4403 -1.7560 -1.7894 27 6 2.1962 -2.0925 -2.8601 28 6 3.2735 -1.2026 -2.9230 29 7 3.1650 -0.3586 -1.9292 30 1 -0.3633 0.4945 0.9009 31 1 -0.3633 0.5329 -0.8786 32 1 -0.3633 -1.0275 -0.0222 33 1 1.7748 -0.8909 4.2164 34 1 3.3263 -1.4434 3.5145 35 1 4.4385 0.6241 4.0649 36 1 3.3500 0.4176 5.4776 37 1 3.1721 3.6366 3.2463 38 1 2.2542 3.9498 5.4748 39 1 3.6252 2.9939 6.0871 40 1 3.6856 5.4477 7.1987 41 1 4.3694 7.8483 9.4146 42 1 2.9049 1.9214 1.8057 43 1 1.1910 1.7894 2.2843 44 1 0.5363 -2.2515 -1.4672 45 1 2.0025 -2.9050 -3.5446 46 1 4.0572 -1.2085 -3.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181098081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:13 Heat of formation + Delta-G solvation = 25.262995 kcal Electronic energy + Delta-G solvation = -28154.862681 eV Core-core repulsion = 24081.797184 eV Total energy + Delta-G solvation = -4073.065497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59057 -40.30601 -38.56533 -37.78373 -34.94066 -34.79139 -33.83454 -31.34505 -31.12950 -30.25099 -29.68602 -29.10513 -26.21155 -25.51322 -24.00151 -23.38770 -21.40709 -21.15705 -20.74109 -19.61357 -19.28102 -17.97694 -17.80387 -17.57763 -16.62209 -16.28842 -15.66776 -15.31188 -15.15164 -14.82063 -14.54684 -14.50391 -14.18556 -13.83746 -13.79080 -13.69410 -13.37604 -13.20087 -13.14471 -12.93777 -12.72836 -12.63536 -12.35593 -12.13120 -11.81280 -11.71141 -11.49785 -11.36437 -11.11093 -10.98179 -10.90283 -10.47396 -10.44705 -10.25492 -9.61588 -9.54598 -9.03492 -8.80336 -8.55691 -8.23101 -8.01439 -6.46124 -3.87178 1.56041 1.92948 2.25532 2.66839 2.69219 3.17281 3.23483 3.27747 3.77080 3.85201 4.01930 4.08672 4.19832 4.26895 4.34005 4.48769 4.59564 4.72470 4.84938 4.92528 4.97165 5.03267 5.04898 5.12717 5.20248 5.29187 5.32467 5.40254 5.43448 5.51779 5.57447 5.65803 5.69956 5.80719 5.87446 5.92036 6.06090 6.21054 6.41818 6.70623 7.03745 7.05833 7.46462 7.48061 7.50972 7.67999 8.00947 8.55762 9.13113 9.48675 9.99756 10.71344 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.001903 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.703559 B =14711.479932 C =15357.769802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.123 0.877 4 C 0.522 3.478 5 O -0.526 6.526 6 N -0.609 5.609 7 C 0.106 3.894 8 C -0.124 4.124 9 C 0.077 3.923 10 H 0.064 0.936 11 N -0.657 5.657 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.583 6.583 15 N -0.562 5.562 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.091 3.909 25 N -0.361 5.361 26 C 0.075 3.925 27 C -0.278 4.278 28 C 0.049 3.951 29 N -0.294 5.294 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.353 0.647 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.170 0.830 45 H 0.148 0.852 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 -17.238 -14.107 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.141 0.859 4 C 0.308 3.692 5 O -0.402 6.402 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.162 4.162 9 C -0.034 4.034 10 H 0.082 0.918 11 N -0.290 5.290 12 C -0.081 4.081 13 C 0.224 3.776 14 O -0.467 6.467 15 N -0.198 5.198 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.032 4.032 25 N -0.143 5.143 26 C -0.071 4.071 27 C -0.307 4.307 28 C -0.138 4.138 29 N -0.114 5.114 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.173 0.827 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.616 -16.865 -13.784 24.230 hybrid contribution -1.017 0.329 0.266 1.102 sum -11.633 -16.535 -13.518 24.320 Atomic orbital electron populations 1.22094 0.90145 1.04488 1.04808 1.21073 0.96450 0.97542 0.80907 0.85929 1.20317 0.78115 0.87408 0.83383 1.90744 1.51892 1.14402 1.83134 1.48342 1.68081 1.07742 1.10191 1.22342 0.99343 0.97541 0.82411 1.22908 1.00671 0.92190 1.00468 1.22532 0.94825 0.92199 0.93869 0.91769 1.60142 1.56228 1.07670 1.04969 1.21729 0.98263 0.96004 0.92110 1.19756 0.87012 0.85844 0.84979 1.90537 1.47711 1.73741 1.34727 1.41850 1.41872 1.22732 1.13384 1.19656 1.22669 0.99989 1.00711 0.87936 1.25267 0.97937 0.99717 0.94963 1.69597 1.41063 1.39730 1.03856 0.85910 0.80133 0.80858 0.77285 1.19896 1.20965 1.19844 1.22345 1.01758 0.80387 0.98736 1.48275 1.20116 1.24616 1.21318 1.22427 0.99795 0.90469 0.94383 1.21482 0.99317 1.06470 1.03450 1.23920 0.99080 0.93736 0.97054 1.77429 1.02170 1.24266 1.07579 0.89313 0.89824 0.90647 0.91144 0.90089 0.89131 0.89627 0.82686 0.93596 0.89435 0.77453 0.91778 0.89684 0.90890 0.81256 0.83462 0.79908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.84 37.16 0.33 -0.58 16 2 C 0.15 1.37 3.37 -69.08 -0.23 1.14 16 3 H 0.12 1.06 7.05 -51.93 -0.37 0.69 16 4 C 0.52 6.13 7.01 -10.99 -0.08 6.05 16 5 O -0.53 -8.03 16.66 5.56 0.09 -7.94 16 6 N -0.61 -6.28 3.33 -170.52 -0.57 -6.85 16 7 C 0.11 1.04 6.93 -2.53 -0.02 1.02 16 8 C -0.12 -1.25 6.78 -24.58 -0.17 -1.42 16 9 C 0.08 0.78 3.28 -65.88 -0.22 0.57 16 10 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 11 N -0.66 -9.29 5.97 -106.06 -0.63 -9.92 16 12 C 0.05 0.82 6.03 -4.98 -0.03 0.79 16 13 C 0.44 9.87 7.82 -10.99 -0.09 9.78 16 14 O -0.58 -15.30 15.78 5.54 0.09 -15.21 16 15 N -0.56 -13.76 5.29 -10.96 -0.06 -13.81 16 16 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 17 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 20 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.09 0.81 5.54 -3.07 -0.02 0.79 16 25 N -0.36 -4.11 3.30 -55.99 -0.18 -4.29 16 26 C 0.07 0.73 10.26 -17.23 -0.18 0.55 16 27 C -0.28 -2.61 10.80 -40.01 -0.43 -3.04 16 28 C 0.05 0.51 12.03 -17.36 -0.21 0.30 16 29 N -0.29 -3.85 12.57 30.63 0.39 -3.47 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.42 7.09 -51.93 -0.37 0.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.88 7.99 -51.93 -0.42 0.47 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.35 5.07 8.02 -39.29 -0.32 4.76 16 38 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.17 1.18 7.23 -52.48 -0.38 0.80 16 45 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -35.56 388.14 -7.61 -43.17 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.71 Total: 11.94 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.57 Total: 8.12 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.33 Total: -61.62 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.56 -7.61 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181098081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.429 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds