Wall clock time and date at job start Tue Mar 31 2020 18:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47192 * 2 1 4 4 C 1.50703 * 109.47032 * 119.99609 * 2 1 3 5 5 O 1.21279 * 119.99848 * 88.85504 * 4 2 1 6 6 N 1.34774 * 120.00265 * 268.84564 * 4 2 1 7 7 C 1.47416 * 125.65064 * 174.54250 * 6 4 2 8 8 C 1.54917 * 104.83242 * 156.14153 * 7 6 4 9 9 C 1.55149 * 101.57993 * 37.01032 * 8 7 6 10 10 H 1.09003 * 110.71724 * 82.86310 * 9 8 7 11 11 N 1.46902 * 110.87434 * 206.06279 * 9 8 7 12 12 C 1.46900 * 110.99970 * 268.61494 * 11 9 8 13 13 C 1.50696 * 109.47163 * 179.97438 * 12 11 9 14 14 O 1.21296 * 120.00156 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00437 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00567 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99861 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00280 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00230 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47102 * 60.00073 * 20 18 16 22 22 H 1.48502 * 109.47124 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47418 * 299.99713 * 20 18 16 24 24 C 1.47021 * 125.64532 * 354.85906 * 6 4 2 25 25 N 1.46503 * 109.47225 * 239.99733 * 2 1 3 26 26 C 1.34947 * 126.03548 * 324.99778 * 25 2 1 27 27 C 1.35312 * 107.74791 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.91772 * 0.02562 * 27 26 25 29 29 N 1.30833 * 108.20086 * 359.73622 * 28 27 26 30 30 H 1.09002 * 109.47039 * 298.76095 * 1 2 3 31 31 H 1.08992 * 109.47231 * 58.76197 * 1 2 3 32 32 H 1.09004 * 109.46718 * 178.76324 * 1 2 3 33 33 H 1.09001 * 110.37266 * 274.98263 * 7 6 4 34 34 H 1.09005 * 110.36799 * 37.30521 * 7 6 4 35 35 H 1.08998 * 111.00160 * 278.93753 * 8 7 6 36 36 H 1.09001 * 111.03653 * 155.10387 * 8 7 6 37 37 H 1.00900 * 110.99918 * 144.65772 * 11 9 8 38 38 H 1.09005 * 109.47155 * 299.99589 * 12 11 9 39 39 H 1.08996 * 109.47475 * 59.99555 * 12 11 9 40 40 H 0.97003 * 119.99512 * 359.97438 * 15 13 12 41 41 H 0.96998 * 120.00425 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88357 * 300.20884 * 24 6 4 43 43 H 1.09000 * 109.88351 * 61.22071 * 24 6 4 44 44 H 1.08004 * 126.12972 * 359.96123 * 26 25 2 45 45 H 1.07995 * 126.04547 * 179.97438 * 27 26 25 46 46 H 1.08002 * 125.89769 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.2147 -1.9091 1.2067 6 7 2.2792 -0.0135 2.3574 7 6 2.6620 -0.5912 3.6585 8 6 3.4030 0.5512 4.3971 9 6 2.5867 1.7924 3.9495 10 1 1.6947 1.9097 4.5649 11 7 3.4121 3.0067 3.9971 12 6 3.2941 3.6726 5.3012 13 6 4.1530 4.9107 5.3125 14 8 4.8003 5.2089 4.3309 15 7 4.2030 5.6863 6.4136 16 6 4.9840 6.8130 6.4237 17 1 5.5597 7.0789 5.5494 18 6 5.0350 7.6129 7.5587 19 7 4.3342 7.2897 8.6223 20 14 6.0998 9.1476 7.5727 21 1 5.6491 10.0726 6.5019 22 1 5.9801 9.8212 8.8908 23 1 7.5163 8.7696 7.3364 24 6 2.2048 1.4485 2.4943 25 7 2.0184 -0.6907 -1.1961 26 6 1.4403 -1.7560 -1.7894 27 6 2.1962 -2.0925 -2.8601 28 6 3.2735 -1.2026 -2.9230 29 7 3.1650 -0.3586 -1.9292 30 1 -0.3633 0.4945 0.9009 31 1 -0.3633 0.5329 -0.8786 32 1 -0.3633 -1.0275 -0.0222 33 1 1.7748 -0.8909 4.2164 34 1 3.3263 -1.4434 3.5145 35 1 4.4385 0.6241 4.0649 36 1 3.3500 0.4176 5.4776 37 1 3.1721 3.6366 3.2463 38 1 2.2542 3.9498 5.4748 39 1 3.6252 2.9939 6.0871 40 1 3.6856 5.4477 7.1987 41 1 4.3694 7.8483 9.4146 42 1 2.9049 1.9214 1.8057 43 1 1.1910 1.7894 2.2843 44 1 0.5363 -2.2515 -1.4672 45 1 2.0025 -2.9050 -3.5446 46 1 4.0572 -1.2085 -3.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181098081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:12 Heat of formation + Delta-G solvation = -2.062478 kcal Electronic energy + Delta-G solvation = -28156.047603 eV Core-core repulsion = 24081.797184 eV Total energy + Delta-G solvation = -4074.250419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34718 -41.14989 -40.14310 -38.91261 -36.19797 -35.67420 -35.49022 -33.25659 -32.07733 -31.01756 -30.40042 -30.02195 -27.71318 -26.25209 -25.56986 -24.19416 -22.18604 -21.89747 -21.59714 -21.11511 -20.30129 -19.89344 -18.61873 -18.38489 -17.78356 -17.43019 -16.82847 -16.54070 -16.36051 -16.12159 -15.69114 -15.49453 -15.30071 -15.18253 -14.80313 -14.52489 -14.36362 -14.15378 -13.92694 -13.82450 -13.60450 -13.48911 -13.41611 -13.31146 -13.15122 -12.84342 -12.70856 -12.56451 -12.42043 -12.20298 -12.11851 -11.87923 -11.68364 -11.49209 -11.33032 -10.42887 -10.32951 -10.00349 -9.86716 -9.55233 -9.36122 -8.45878 -5.94184 0.79105 1.16105 1.40217 1.42592 1.49514 1.52901 1.88980 1.95397 2.07453 2.29709 2.83577 3.18611 3.21929 3.37855 3.48521 3.53934 3.72516 3.74150 3.95514 4.09986 4.13929 4.22223 4.29383 4.34245 4.48884 4.52935 4.54362 4.56396 4.64243 4.68024 4.73293 4.75633 4.84447 4.87598 5.01302 5.12738 5.14115 5.22011 5.41910 5.70215 5.89107 6.02259 6.10108 6.22912 6.38283 6.61460 6.71220 6.82955 7.14048 7.58222 8.13759 8.71013 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.001903 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.703559 B =14711.479932 C =15357.769802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.126 0.874 4 C 0.518 3.482 5 O -0.570 6.570 6 N -0.608 5.608 7 C 0.107 3.893 8 C -0.121 4.121 9 C 0.081 3.919 10 H 0.092 0.908 11 N -0.675 5.675 12 C 0.068 3.932 13 C 0.436 3.564 14 O -0.625 6.625 15 N -0.573 5.573 16 C -0.334 4.334 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.990 3.010 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.093 3.907 25 N -0.371 5.371 26 C 0.068 3.932 27 C -0.285 4.285 28 C 0.041 3.959 29 N -0.344 5.344 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.350 0.650 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.397 0.603 41 H 0.277 0.723 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.195 0.805 45 H 0.172 0.828 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 -17.539 -13.870 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.143 0.857 4 C 0.305 3.695 5 O -0.448 6.448 6 N -0.341 5.341 7 C -0.015 4.015 8 C -0.159 4.159 9 C -0.029 4.029 10 H 0.110 0.890 11 N -0.309 5.309 12 C -0.064 4.064 13 C 0.224 3.776 14 O -0.512 6.512 15 N -0.210 5.210 16 C -0.463 4.463 17 H 0.096 0.904 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.814 3.186 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.030 4.030 25 N -0.154 5.154 26 C -0.078 4.078 27 C -0.314 4.314 28 C -0.145 4.145 29 N -0.165 5.165 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.170 0.830 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.212 0.788 45 H 0.189 0.811 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.596 -17.164 -13.525 25.223 hybrid contribution -0.379 0.350 0.152 0.538 sum -12.975 -16.814 -13.373 25.098 Atomic orbital electron populations 1.22135 0.87214 1.05119 1.06323 1.21302 0.98600 0.96953 0.79310 0.85660 1.20785 0.77502 0.87031 0.84139 1.90714 1.53980 1.16241 1.83895 1.48427 1.67189 1.08377 1.10133 1.22373 0.99892 0.96794 0.82465 1.22861 0.99184 0.92461 1.01424 1.22591 0.95093 0.90116 0.95140 0.89023 1.60077 1.58220 1.08563 1.03992 1.21574 0.98205 0.93005 0.93632 1.20953 0.86358 0.86872 0.83448 1.90508 1.49449 1.75124 1.36096 1.41920 1.42104 1.22684 1.14313 1.19605 1.24163 1.01991 1.00590 0.90439 1.25994 0.98810 1.02053 0.94337 1.69651 1.41561 1.40616 1.04124 0.85028 0.78279 0.77516 0.77761 1.19677 1.19531 1.19953 1.22414 1.03521 0.79338 0.97685 1.48485 1.19912 1.25289 1.21729 1.22968 1.00521 0.90015 0.94253 1.21873 0.98802 1.06841 1.03849 1.24448 0.99864 0.93324 0.96833 1.77349 1.03850 1.26190 1.09134 0.87373 0.88657 0.90439 0.88888 0.91876 0.91821 0.88013 0.82980 0.90537 0.87700 0.76874 0.91319 0.90905 0.87329 0.78829 0.81059 0.77689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.84 71.98 0.64 -0.73 16 2 C 0.14 2.55 3.37 44.25 0.15 2.69 16 3 H 0.13 2.06 7.05 -2.39 -0.02 2.05 16 4 C 0.52 11.81 7.01 87.66 0.61 12.42 16 5 O -0.57 -17.43 16.66 -3.03 -0.05 -17.48 16 6 N -0.61 -11.71 3.33 -811.80 -2.70 -14.41 16 7 C 0.11 1.95 6.93 86.86 0.60 2.55 16 8 C -0.12 -2.25 6.78 31.99 0.22 -2.03 16 9 C 0.08 1.43 3.28 46.10 0.15 1.58 16 10 H 0.09 1.22 7.82 -2.39 -0.02 1.21 16 11 N -0.67 -18.01 5.97 -489.46 -2.92 -20.93 16 12 C 0.07 2.02 6.03 85.56 0.52 2.53 16 13 C 0.44 19.57 7.82 87.66 0.69 20.26 16 14 O -0.63 -33.45 15.78 -3.08 -0.05 -33.49 16 15 N -0.57 -28.20 5.29 -306.99 -1.62 -29.83 16 16 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 17 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 18 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 19 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 20 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.09 1.45 5.54 86.73 0.48 1.94 16 25 N -0.37 -8.30 3.30 -331.05 -1.09 -9.39 16 26 C 0.07 1.25 10.26 83.54 0.86 2.11 16 27 C -0.28 -5.05 10.80 21.99 0.24 -4.82 16 28 C 0.04 0.85 12.03 85.24 1.03 1.88 16 29 N -0.34 -9.12 12.57 -57.02 -0.72 -9.84 16 30 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.69 7.09 -2.38 -0.02 0.68 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.39 7.99 -2.38 -0.02 1.37 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.35 9.68 8.02 -89.69 -0.72 8.96 16 38 H 0.08 1.85 8.08 -2.38 -0.02 1.83 16 39 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.40 18.39 7.90 -92.71 -0.73 17.66 16 41 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 42 H 0.07 1.35 7.68 -2.39 -0.02 1.34 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.19 2.36 7.23 -2.91 -0.02 2.34 16 45 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.21 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -79.64 388.14 0.17 -79.47 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.44 Total: 37.22 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 7.45 Total: 22.49 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -8.77 Total: -132.52 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.10 Total: -50.97 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -79.64 0.17 -79.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181098081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.407 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds