Wall clock time and date at job start Tue Mar 31 2020 18:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46853 * 2 1 4 4 C 1.35035 * 124.88303 * 124.99203 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.78489 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.47022 * 125.64657 * 0.29434 * 9 7 6 11 11 C 1.54325 * 107.26819 * 181.02607 * 10 9 7 12 12 C 1.55148 * 102.94316 * 22.19597 * 11 10 9 13 13 H 1.09005 * 111.00477 * 82.57222 * 12 11 10 14 14 N 1.46904 * 111.00647 * 206.38423 * 12 11 10 15 15 C 1.46898 * 111.00327 * 205.00230 * 14 12 11 16 16 C 1.50695 * 109.47358 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99968 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99994 * 179.97438 * 16 15 14 19 19 C 1.37105 * 120.00044 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99630 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99978 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47132 * 60.00453 * 23 21 19 25 25 H 1.48505 * 109.46987 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47215 * 300.00108 * 23 21 19 27 27 C 1.47427 * 125.64684 * 179.97438 * 9 7 6 28 28 N 1.28463 * 124.88745 * 305.02749 * 3 2 1 29 29 H 1.09008 * 109.46645 * 299.99493 * 1 2 3 30 30 H 1.09001 * 109.47437 * 59.99199 * 1 2 3 31 31 H 1.08996 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47014 * 240.00808 * 2 1 3 33 33 H 1.08992 * 109.47686 * 120.00280 * 2 1 3 34 34 H 1.08008 * 126.38238 * 0.05084 * 4 3 2 35 35 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 36 36 H 1.08992 * 109.88825 * 300.44379 * 10 9 7 37 37 H 1.09004 * 109.88288 * 61.61654 * 10 9 7 38 38 H 1.09004 * 110.71878 * 140.56082 * 11 10 9 39 39 H 1.09007 * 110.71916 * 263.82985 * 11 10 9 40 40 H 1.00898 * 111.00231 * 81.04506 * 14 12 11 41 41 H 1.09001 * 109.46972 * 300.00447 * 15 14 12 42 42 H 1.09002 * 109.47381 * 59.99480 * 15 14 12 43 43 H 0.97002 * 120.00465 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99880 * 179.97438 * 22 21 19 45 45 H 1.09001 * 110.36238 * 274.73951 * 27 9 7 46 46 H 1.08998 * 110.36877 * 37.06534 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8746 1.8977 0.9075 5 6 3.0863 3.1910 0.5685 6 6 2.2994 3.4128 -0.5865 7 6 2.1845 4.6767 -1.3424 8 8 2.8010 5.6598 -0.9801 9 7 1.4005 4.7384 -2.4369 10 6 0.6034 3.6305 -2.9835 11 6 -0.1064 4.1573 -4.2485 12 6 0.7738 5.3657 -4.6631 13 1 1.6414 5.0388 -5.2364 14 7 -0.0096 6.3540 -5.4165 15 6 0.8559 7.1550 -6.2924 16 6 0.0189 8.1549 -7.0477 17 8 -1.1808 8.1959 -6.8739 18 7 0.6033 9.0035 -7.9164 19 6 -0.1583 9.9129 -8.6040 20 1 -1.2266 9.9494 -8.4491 21 6 0.4443 10.7882 -9.4992 22 7 1.7441 10.7441 -9.6872 23 14 -0.5934 12.0276 -10.4354 24 1 -1.2869 12.9204 -9.4725 25 1 0.2817 12.8378 -11.3205 26 1 -1.5999 11.3096 -11.2581 27 6 1.1950 5.9298 -3.2805 28 7 1.6929 2.2756 -0.8629 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.3126 1.3749 1.7450 35 1 3.7203 3.9040 1.0743 36 1 1.2561 2.7975 -3.2444 37 1 -0.1363 3.3089 -2.2502 38 1 -0.1132 3.3986 -5.0311 39 1 -1.1208 4.4811 -4.0150 40 1 -0.5406 6.9449 -4.7944 41 1 1.5956 7.6815 -5.6893 42 1 1.3641 6.4992 -6.9995 43 1 1.5628 8.9710 -8.0552 44 1 2.1647 11.3549 -10.3125 45 1 0.4044 6.5558 -2.8666 46 1 2.1218 6.4966 -3.3688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186074636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:46 Heat of formation + Delta-G solvation = -5.503897 kcal Electronic energy + Delta-G solvation = -27968.053703 eV Core-core repulsion = 23893.654053 eV Total energy + Delta-G solvation = -4074.399650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.62374 -41.03960 -40.12237 -38.77886 -36.22077 -35.62356 -35.38278 -33.27562 -32.21890 -31.52956 -30.91129 -29.71338 -27.89704 -26.30407 -25.28505 -24.10388 -22.86384 -22.04012 -21.88785 -21.10211 -20.35233 -19.92199 -18.55204 -17.94000 -17.63596 -17.40098 -17.16637 -16.77841 -16.37938 -16.23458 -15.90658 -15.55744 -15.28549 -15.16455 -14.73476 -14.50969 -14.38873 -14.22673 -14.01687 -13.81775 -13.55678 -13.49701 -13.26351 -13.21850 -12.94607 -12.89164 -12.61931 -12.46067 -12.41298 -12.24102 -12.11793 -11.77178 -11.71486 -11.49845 -11.35860 -10.35280 -10.24522 -10.09111 -10.01741 -9.75969 -9.39751 -8.46135 -5.95117 0.49735 1.19889 1.40365 1.42043 1.50346 1.53284 1.90743 2.05178 2.28907 2.29907 2.86758 3.20722 3.22104 3.42099 3.58477 3.70379 3.89746 3.97954 4.00037 4.08643 4.23865 4.25808 4.29769 4.34877 4.40283 4.43728 4.55379 4.63213 4.73028 4.75101 4.77536 4.83161 4.84904 4.91124 5.05091 5.17410 5.20777 5.27207 5.39873 5.41228 5.86371 5.92031 6.06841 6.28806 6.34284 6.59795 6.80045 7.06431 7.12415 7.56034 8.10926 8.70979 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.001822 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.312848 B =15364.235037 C =15968.797861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.108 3.892 3 N -0.276 5.276 4 C 0.003 3.997 5 C -0.207 4.207 6 C -0.049 4.049 7 C 0.608 3.392 8 O -0.580 6.580 9 N -0.604 5.604 10 C 0.121 3.879 11 C -0.113 4.113 12 C 0.084 3.916 13 H 0.104 0.896 14 N -0.659 5.659 15 C 0.062 3.938 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.077 3.923 28 N -0.259 5.259 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.227 0.773 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.348 0.652 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.068 0.932 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -27.405 21.511 35.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.066 5.066 4 C -0.140 4.140 5 C -0.235 4.235 6 C -0.206 4.206 7 C 0.396 3.604 8 O -0.459 6.459 9 N -0.337 5.337 10 C -0.001 4.001 11 C -0.151 4.151 12 C -0.027 4.027 13 H 0.122 0.878 14 N -0.290 5.290 15 C -0.071 4.071 16 C 0.226 3.774 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.047 4.047 28 N -0.097 5.097 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.176 0.824 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.168 0.832 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.249 -27.822 20.470 34.614 hybrid contribution 1.115 2.097 0.600 2.450 sum 3.364 -25.725 21.070 33.422 Atomic orbital electron populations 1.22067 0.93211 1.04549 1.02534 1.22485 0.96624 0.74637 1.07268 1.46215 1.31418 1.11236 1.17750 1.23465 0.97558 0.94277 0.98694 1.21977 1.05192 0.97952 0.98422 1.21650 1.05186 0.92877 1.00934 1.16997 0.78112 0.86200 0.79050 1.90764 1.48105 1.37748 1.69293 1.48262 1.45201 1.14039 1.26172 1.22138 0.94247 0.88593 0.95143 1.22681 0.99030 0.97063 0.96332 1.22879 0.96544 0.93078 0.90227 0.87794 1.60202 1.24890 1.19633 1.24263 1.21637 0.93904 0.94762 0.96773 1.20811 0.88778 0.84400 0.83446 1.90491 1.16978 1.74020 1.69380 1.41933 1.10371 1.31338 1.37355 1.19650 0.93098 1.12926 1.20769 0.90194 1.26066 0.97238 0.99965 0.98109 1.69671 1.10021 1.39397 1.37022 0.84972 0.77735 0.77603 0.77921 1.19745 1.19520 1.19608 1.23143 1.01495 0.88469 0.91634 1.73507 1.21905 0.97874 1.16437 0.92771 0.92682 0.87843 0.87661 0.84122 0.75614 0.82425 0.90075 0.90580 0.87790 0.90125 0.83246 0.91740 0.87237 0.76974 0.91299 0.91426 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.02 71.98 0.72 0.02 16 2 C 0.11 0.30 7.12 86.38 0.61 0.91 16 3 N -0.28 -3.31 3.41 -347.94 -1.19 -4.50 16 4 C 0.00 0.03 11.40 83.54 0.95 0.98 16 5 C -0.21 -4.03 10.81 22.41 0.24 -3.79 16 6 C -0.05 -1.19 6.98 42.46 0.30 -0.89 16 7 C 0.61 18.42 7.86 86.75 0.68 19.10 16 8 O -0.58 -21.73 17.18 -3.95 -0.07 -21.79 16 9 N -0.60 -15.81 3.32 -814.86 -2.71 -18.52 16 10 C 0.12 2.39 5.54 86.73 0.48 2.88 16 11 C -0.11 -2.20 6.64 31.78 0.21 -1.99 16 12 C 0.08 2.01 3.40 46.39 0.16 2.17 16 13 H 0.10 2.33 7.83 -2.38 -0.02 2.31 16 14 N -0.66 -20.47 6.04 -487.99 -2.95 -23.42 16 15 C 0.06 2.12 6.03 85.56 0.52 2.64 16 16 C 0.44 21.05 7.82 87.66 0.69 21.73 16 17 O -0.62 -34.65 15.78 -3.06 -0.05 -34.70 16 18 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 19 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.55 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C 0.08 2.06 6.51 86.94 0.57 2.62 16 28 N -0.26 -4.98 9.19 -48.17 -0.44 -5.42 16 29 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.14 -0.62 8.04 -2.39 -0.02 -0.64 16 34 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.08 1.50 7.65 -2.39 -0.02 1.48 16 37 H 0.08 1.46 7.78 -2.39 -0.02 1.44 16 38 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.35 11.51 7.89 -89.70 -0.71 10.80 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.11 3.35 8.09 -2.39 -0.02 3.33 16 43 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 44 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.07 1.85 7.76 -2.39 -0.02 1.84 16 46 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 Total: -1.00 -80.48 388.91 0.27 -80.21 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.42 Total: 36.56 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 7.40 Total: 27.63 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -8.62 Total: -133.45 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.12 Total: -56.50 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.48 0.27 -80.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186074636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.704 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds