Wall clock time and date at job start Tue Mar 31 2020 19:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.35848 * 126.13656 * 269.68545 * 3 2 1 5 5 N 1.30172 * 109.00121 * 179.85799 * 4 3 2 6 6 C 1.35756 * 108.86931 * 0.40977 * 5 4 3 7 7 C 1.47320 * 126.23853 * 179.76408 * 6 5 4 8 8 O 1.21622 * 120.00274 * 179.97438 * 7 6 5 9 9 N 1.34783 * 119.99690 * 359.97438 * 7 6 5 10 10 C 1.47018 * 125.64862 * 0.02656 * 9 7 6 11 11 C 1.54328 * 107.27080 * 181.02183 * 10 9 7 12 12 C 1.55158 * 102.94024 * 22.19157 * 11 10 9 13 13 H 1.08999 * 111.00729 * 82.57451 * 12 11 10 14 14 N 1.46904 * 111.00219 * 206.38753 * 12 11 10 15 15 C 1.46895 * 110.99661 * 205.00149 * 14 12 11 16 16 C 1.50705 * 109.47232 * 180.02562 * 15 14 12 17 17 O 1.21299 * 119.99555 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00286 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00013 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99782 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99942 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00413 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46844 * 60.00111 * 23 21 19 25 25 H 1.48498 * 109.47245 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46940 * 300.00249 * 23 21 19 27 27 C 1.47423 * 125.64363 * 179.71794 * 9 7 6 28 28 C 1.35379 * 126.13284 * 90.00289 * 3 2 1 29 29 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 30 30 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 31 31 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 33 33 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 34 34 H 1.08004 * 125.49829 * 0.02592 * 4 3 2 35 35 H 1.09006 * 109.88291 * 300.43479 * 10 9 7 36 36 H 1.09000 * 109.88579 * 61.60238 * 10 9 7 37 37 H 1.08996 * 110.71817 * 140.55037 * 11 10 9 38 38 H 1.08997 * 110.71513 * 263.83195 * 11 10 9 39 39 H 1.00894 * 111.00125 * 81.04915 * 14 12 11 40 40 H 1.09005 * 109.47221 * 299.99434 * 15 14 12 41 41 H 1.08997 * 109.47751 * 60.00137 * 15 14 12 42 42 H 0.96996 * 120.00372 * 359.97438 * 18 16 15 43 43 H 0.97001 * 120.00437 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.36268 * 274.74188 * 27 9 7 45 45 H 1.08993 * 110.37337 * 37.06819 * 27 9 7 46 46 H 1.07994 * 126.56478 * 359.97385 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2910 2.1346 -1.0971 5 7 2.7008 3.3091 -0.7136 6 6 2.7142 3.3480 0.6433 7 6 3.1186 4.4927 1.4778 8 8 3.0861 4.4029 2.6903 9 7 3.5248 5.6394 0.8976 10 6 3.6115 5.8835 -0.5496 11 6 4.1473 7.3181 -0.7410 12 6 4.8676 7.6022 0.6036 13 1 5.8736 7.1828 0.6042 14 7 4.9006 9.0429 0.8891 15 6 6.0253 9.3788 1.7723 16 6 6.0263 10.8614 2.0427 17 8 5.1741 11.5686 1.5478 18 7 6.9745 11.4016 2.8334 19 6 6.9751 12.7503 3.0798 20 1 6.2158 13.3798 2.6398 21 6 7.9524 13.3071 3.8955 22 7 8.8766 12.5412 4.4304 23 14 7.9535 15.1449 4.2306 24 1 6.6775 15.5293 4.8859 25 1 9.0901 15.4845 5.1239 26 1 8.0934 15.8816 2.9488 27 6 3.9495 6.8587 1.6091 28 6 2.2844 2.1339 1.0934 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.1825 1.8120 -2.1221 35 1 4.2959 5.1683 -1.0058 36 1 2.6233 5.7937 -1.0006 37 1 4.8516 7.3590 -1.5718 38 1 3.3267 8.0189 -0.8945 39 1 4.0256 9.3534 1.2838 40 1 5.9223 8.8384 2.7133 41 1 6.9618 9.0962 1.2916 42 1 7.6562 10.8361 3.2288 43 1 9.5586 12.9299 5.0001 44 1 3.0841 7.4718 1.8610 45 1 4.5060 6.5984 2.5093 46 1 2.1771 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187127488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:37 Heat of formation + Delta-G solvation = 1.464389 kcal Electronic energy + Delta-G solvation = -27708.049410 eV Core-core repulsion = 23633.951928 eV Total energy + Delta-G solvation = -4074.097482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56953 -39.85673 -38.30974 -37.44969 -35.54168 -34.59530 -33.71828 -31.25390 -31.01184 -30.64210 -29.96486 -28.50915 -26.27161 -24.74217 -24.11872 -23.41520 -22.18399 -21.36418 -20.74556 -19.51751 -19.22223 -17.93004 -17.77008 -16.68684 -16.40790 -16.11523 -15.87020 -15.40803 -15.23792 -14.76809 -14.53599 -14.41583 -14.29875 -14.17728 -13.95983 -13.58348 -13.47140 -13.24247 -12.90141 -12.80635 -12.68247 -12.50058 -12.19344 -12.08207 -11.73365 -11.58255 -11.37597 -11.26735 -10.97459 -10.72149 -10.50710 -10.40576 -10.19404 -10.17139 -10.10854 -9.45844 -9.04386 -8.60426 -8.41482 -8.03429 -7.91626 -6.37286 -3.78159 1.29340 2.10871 2.15541 2.95859 3.23849 3.29197 3.33799 3.39673 3.94476 3.95467 4.01511 4.15328 4.23583 4.30611 4.34907 4.50161 4.55044 4.72887 4.84599 4.90946 4.94519 5.09875 5.13600 5.20373 5.29933 5.32966 5.35594 5.41708 5.64261 5.65913 5.81011 5.88284 5.89802 5.99143 6.04079 6.11430 6.17892 6.28386 6.35272 6.61431 7.23680 7.38339 7.52267 7.59206 7.65433 8.10386 8.14835 8.65652 9.22014 9.58758 10.10219 10.80342 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.001697 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.104292 B =16494.940994 C =16882.814421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.183 3.817 5 N -0.457 5.457 6 C -0.056 4.056 7 C 0.614 3.386 8 O -0.549 6.549 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.124 4.124 12 C 0.077 3.923 13 H 0.093 0.907 14 N -0.652 5.652 15 C 0.048 3.952 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.077 3.923 28 C 0.034 3.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.210 0.790 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.353 0.647 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -29.522 -11.143 34.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.101 4.101 5 N -0.176 5.176 6 C -0.185 4.185 7 C 0.403 3.597 8 O -0.427 6.427 9 N -0.334 5.334 10 C -0.006 4.006 11 C -0.162 4.162 12 C -0.035 4.035 13 H 0.111 0.889 14 N -0.283 5.283 15 C -0.085 4.085 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.048 4.048 28 C -0.105 4.105 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.173 0.827 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.138 -28.373 -11.761 33.406 hybrid contribution -0.073 -0.587 1.744 1.842 sum -13.211 -28.960 -10.017 33.370 Atomic orbital electron populations 1.22183 0.93691 1.03499 1.03569 1.21975 0.95939 0.79285 1.05172 1.45559 1.48344 1.13228 1.06839 1.25229 1.03630 0.87581 0.93627 1.70742 1.17745 1.18818 1.10313 1.20455 1.12258 0.95275 0.90554 1.16555 0.76800 0.80396 0.85958 1.90808 1.55898 1.82618 1.13353 1.48099 1.64743 1.12119 1.08486 1.22082 1.01951 0.96422 0.80118 1.22728 1.00860 0.94900 0.97735 1.22860 0.98594 0.88014 0.94007 0.88922 1.60168 1.07344 1.11183 1.49631 1.21760 0.95427 0.95936 0.95352 1.19790 0.84897 0.88782 0.83897 1.90525 1.39751 1.62335 1.54175 1.41851 1.26320 1.08953 1.42847 1.19662 1.12572 0.83334 1.27407 0.87957 1.25257 0.95564 1.00390 0.96691 1.69604 1.15591 1.36166 1.32942 0.85916 0.77691 0.82208 0.78376 1.19937 1.21009 1.19890 1.23185 0.98666 0.85876 0.97050 1.22565 1.02847 0.91810 0.93263 0.91609 0.91574 0.90239 0.88347 0.88649 0.77346 0.90740 0.90892 0.89660 0.90020 0.82678 0.93597 0.89409 0.77431 0.91842 0.91075 0.90346 0.79656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.31 10.24 37.16 0.38 0.07 16 2 C 0.10 0.19 6.84 -4.04 -0.03 0.16 16 3 N -0.46 -2.70 2.73 -118.36 -0.32 -3.02 16 4 C 0.18 1.23 12.55 -89.91 -1.13 0.10 16 5 N -0.46 -4.74 8.77 -11.03 -0.10 -4.84 16 6 C -0.06 -0.67 6.82 -83.09 -0.57 -1.24 16 7 C 0.61 9.01 7.84 -12.56 -0.10 8.91 16 8 O -0.55 -9.56 17.14 5.26 0.09 -9.47 16 9 N -0.60 -8.11 3.32 -171.68 -0.57 -8.68 16 10 C 0.12 1.32 5.52 -3.06 -0.02 1.30 16 11 C -0.12 -1.40 6.65 -24.89 -0.17 -1.56 16 12 C 0.08 1.01 3.40 -65.44 -0.22 0.79 16 13 H 0.09 1.18 7.83 -51.93 -0.41 0.77 16 14 N -0.65 -10.62 6.04 -105.60 -0.64 -11.26 16 15 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 16 C 0.44 10.58 7.82 -10.99 -0.09 10.49 16 17 O -0.58 -16.05 15.78 5.54 0.09 -15.96 16 18 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 19 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 23 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.08 1.04 6.51 -2.41 -0.02 1.03 16 28 C 0.03 0.30 11.26 -16.64 -0.19 0.12 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.16 8.14 -51.92 -0.42 -0.27 16 31 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.21 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 36 H 0.07 0.82 7.74 -51.93 -0.40 0.42 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.35 5.96 7.89 -39.29 -0.31 5.65 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 42 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.07 0.98 7.76 -51.93 -0.40 0.58 16 45 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 46 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -36.20 389.21 -9.16 -45.36 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.82 Total: 11.56 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -2.40 Total: 12.85 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -0.96 Total: -66.56 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.18 Total: -25.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.20 -9.16 -45.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187127488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.829 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds