Wall clock time and date at job start Tue Mar 31 2020 19:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.35848 * 126.13656 * 269.68545 * 3 2 1 5 5 N 1.30172 * 109.00121 * 179.85799 * 4 3 2 6 6 C 1.35756 * 108.86931 * 0.40977 * 5 4 3 7 7 C 1.47320 * 126.23853 * 179.76408 * 6 5 4 8 8 O 1.21622 * 120.00274 * 179.97438 * 7 6 5 9 9 N 1.34783 * 119.99690 * 359.97438 * 7 6 5 10 10 C 1.47018 * 125.64862 * 0.02656 * 9 7 6 11 11 C 1.54328 * 107.27080 * 181.02183 * 10 9 7 12 12 C 1.55158 * 102.94024 * 22.19157 * 11 10 9 13 13 H 1.08999 * 111.00729 * 82.57451 * 12 11 10 14 14 N 1.46904 * 111.00219 * 206.38753 * 12 11 10 15 15 C 1.46895 * 110.99661 * 205.00149 * 14 12 11 16 16 C 1.50705 * 109.47232 * 180.02562 * 15 14 12 17 17 O 1.21299 * 119.99555 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00286 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00013 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99782 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99942 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00413 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46844 * 60.00111 * 23 21 19 25 25 H 1.48498 * 109.47245 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46940 * 300.00249 * 23 21 19 27 27 C 1.47423 * 125.64363 * 179.71794 * 9 7 6 28 28 C 1.35379 * 126.13284 * 90.00289 * 3 2 1 29 29 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 30 30 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 31 31 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 33 33 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 34 34 H 1.08004 * 125.49829 * 0.02592 * 4 3 2 35 35 H 1.09006 * 109.88291 * 300.43479 * 10 9 7 36 36 H 1.09000 * 109.88579 * 61.60238 * 10 9 7 37 37 H 1.08996 * 110.71817 * 140.55037 * 11 10 9 38 38 H 1.08997 * 110.71513 * 263.83195 * 11 10 9 39 39 H 1.00894 * 111.00125 * 81.04915 * 14 12 11 40 40 H 1.09005 * 109.47221 * 299.99434 * 15 14 12 41 41 H 1.08997 * 109.47751 * 60.00137 * 15 14 12 42 42 H 0.96996 * 120.00372 * 359.97438 * 18 16 15 43 43 H 0.97001 * 120.00437 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.36268 * 274.74188 * 27 9 7 45 45 H 1.08993 * 110.37337 * 37.06819 * 27 9 7 46 46 H 1.07994 * 126.56478 * 359.97385 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2910 2.1346 -1.0971 5 7 2.7008 3.3091 -0.7136 6 6 2.7142 3.3480 0.6433 7 6 3.1186 4.4927 1.4778 8 8 3.0861 4.4029 2.6903 9 7 3.5248 5.6394 0.8976 10 6 3.6115 5.8835 -0.5496 11 6 4.1473 7.3181 -0.7410 12 6 4.8676 7.6022 0.6036 13 1 5.8736 7.1828 0.6042 14 7 4.9006 9.0429 0.8891 15 6 6.0253 9.3788 1.7723 16 6 6.0263 10.8614 2.0427 17 8 5.1741 11.5686 1.5478 18 7 6.9745 11.4016 2.8334 19 6 6.9751 12.7503 3.0798 20 1 6.2158 13.3798 2.6398 21 6 7.9524 13.3071 3.8955 22 7 8.8766 12.5412 4.4304 23 14 7.9535 15.1449 4.2306 24 1 6.6775 15.5293 4.8859 25 1 9.0901 15.4845 5.1239 26 1 8.0934 15.8816 2.9488 27 6 3.9495 6.8587 1.6091 28 6 2.2844 2.1339 1.0934 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.1825 1.8120 -2.1221 35 1 4.2959 5.1683 -1.0058 36 1 2.6233 5.7937 -1.0006 37 1 4.8516 7.3590 -1.5718 38 1 3.3267 8.0189 -0.8945 39 1 4.0256 9.3534 1.2838 40 1 5.9223 8.8384 2.7133 41 1 6.9618 9.0962 1.2916 42 1 7.6562 10.8361 3.2288 43 1 9.5586 12.9299 5.0001 44 1 3.0841 7.4718 1.8610 45 1 4.5060 6.5984 2.5093 46 1 2.1771 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187127488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:36 Heat of formation + Delta-G solvation = -24.316866 kcal Electronic energy + Delta-G solvation = -27709.167369 eV Core-core repulsion = 23633.951928 eV Total energy + Delta-G solvation = -4075.215441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.16788 -40.93463 -40.09878 -38.70657 -36.22652 -35.93407 -35.46588 -33.26761 -31.97333 -31.25871 -30.68912 -29.63934 -27.82593 -26.06281 -24.91696 -24.41956 -23.01859 -21.98144 -21.72448 -21.09149 -20.35554 -19.91570 -18.58069 -17.82028 -17.42535 -17.38743 -16.96456 -16.57158 -16.32480 -16.14109 -15.84405 -15.46430 -15.21560 -15.19858 -14.86749 -14.67243 -14.63287 -14.22223 -14.14358 -13.78559 -13.57265 -13.49474 -13.41256 -13.19668 -12.97027 -12.88383 -12.54469 -12.43717 -12.37420 -12.18923 -12.11080 -11.70616 -11.49363 -11.38879 -11.01988 -10.73196 -10.34374 -10.01190 -9.89423 -9.53771 -9.35996 -8.45581 -5.94680 0.52675 1.40869 1.42453 1.45651 1.53673 1.65335 2.02685 2.06321 2.30326 2.48048 2.88661 3.21416 3.29209 3.48058 3.63907 3.74343 3.79157 3.90410 4.02801 4.10758 4.13906 4.29623 4.33698 4.38971 4.42217 4.43083 4.45716 4.56423 4.66457 4.71223 4.78832 4.84879 4.96078 5.06970 5.14715 5.23854 5.24479 5.30294 5.41607 5.45234 5.87899 6.07826 6.13311 6.30563 6.45659 6.60428 6.78152 7.12808 7.12933 7.56505 8.11548 8.71526 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.001697 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.104292 B =16494.940994 C =16882.814421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.449 5.449 4 C 0.196 3.804 5 N -0.487 5.487 6 C -0.095 4.095 7 C 0.605 3.395 8 O -0.591 6.591 9 N -0.605 5.605 10 C 0.129 3.871 11 C -0.115 4.115 12 C 0.084 3.916 13 H 0.103 0.897 14 N -0.659 5.659 15 C 0.062 3.938 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.078 3.922 28 C 0.041 3.959 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.347 0.653 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 -31.560 -12.643 36.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.129 5.129 4 C -0.088 4.088 5 N -0.206 5.206 6 C -0.223 4.223 7 C 0.396 3.604 8 O -0.473 6.473 9 N -0.337 5.337 10 C 0.006 3.994 11 C -0.153 4.153 12 C -0.027 4.027 13 H 0.121 0.879 14 N -0.290 5.290 15 C -0.070 4.070 16 C 0.226 3.774 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.047 4.047 28 C -0.100 4.100 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.267 0.733 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.167 0.833 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.137 -30.455 -13.291 35.732 hybrid contribution -0.149 -0.094 2.150 2.157 sum -13.286 -30.550 -11.141 35.127 Atomic orbital electron populations 1.22164 0.93574 1.04405 1.02468 1.22338 0.95913 0.77164 1.07229 1.45814 1.47101 1.14346 1.05671 1.26022 1.01108 0.86486 0.95180 1.70647 1.19515 1.21016 1.09456 1.20234 1.15246 0.95402 0.91407 1.17082 0.76184 0.81237 0.85907 1.90760 1.57881 1.83495 1.15119 1.48213 1.64316 1.11781 1.09361 1.22060 1.02174 0.96320 0.78812 1.22705 1.00853 0.94683 0.97078 1.22865 0.99193 0.85942 0.94704 0.87926 1.60204 1.06530 1.13264 1.49017 1.21634 0.97112 0.91363 0.96930 1.20812 0.83338 0.91145 0.82137 1.90493 1.40960 1.64146 1.55268 1.41922 1.27069 1.08395 1.43570 1.19660 1.13225 0.84599 1.29097 0.90206 1.26054 0.94712 1.04685 0.95793 1.69669 1.15755 1.37808 1.32868 0.84975 0.78035 0.76860 0.78370 1.19752 1.19489 1.19614 1.23089 0.98450 0.86220 0.96907 1.22692 1.01584 0.91342 0.94424 0.93424 0.91931 0.88340 0.85417 0.87562 0.73332 0.90143 0.90730 0.88012 0.90357 0.83298 0.91790 0.87279 0.76980 0.91298 0.91705 0.91620 0.78983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.21 10.24 71.98 0.74 0.52 16 2 C 0.09 0.07 6.84 86.38 0.59 0.66 16 3 N -0.45 -4.26 2.73 -528.37 -1.44 -5.70 16 4 C 0.20 2.12 12.55 180.10 2.26 4.38 16 5 N -0.49 -9.48 8.77 -188.82 -1.66 -11.14 16 6 C -0.10 -2.25 6.82 40.50 0.28 -1.98 16 7 C 0.61 18.33 7.84 86.63 0.68 19.01 16 8 O -0.59 -21.64 17.14 -4.10 -0.07 -21.71 16 9 N -0.61 -16.51 3.32 -815.32 -2.71 -19.23 16 10 C 0.13 2.79 5.52 86.73 0.48 3.27 16 11 C -0.11 -2.45 6.65 31.78 0.21 -2.23 16 12 C 0.08 2.13 3.40 46.38 0.16 2.29 16 13 H 0.10 2.44 7.83 -2.39 -0.02 2.42 16 14 N -0.66 -21.17 6.04 -488.00 -2.95 -24.11 16 15 C 0.06 2.18 6.03 85.56 0.52 2.70 16 16 C 0.44 21.31 7.82 87.66 0.69 21.99 16 17 O -0.62 -35.03 15.78 -3.09 -0.05 -35.08 16 18 N -0.57 -30.06 5.29 -306.98 -1.62 -31.68 16 19 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -50.57 13.05 21.66 0.28 -50.29 16 23 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.08 2.17 6.51 86.93 0.57 2.73 16 28 C 0.04 0.70 11.26 83.72 0.94 1.65 16 29 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.25 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.08 1.68 7.63 -2.38 -0.02 1.66 16 36 H 0.07 1.62 7.74 -2.39 -0.02 1.60 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.35 11.86 7.89 -89.70 -0.71 11.15 16 40 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.11 3.42 8.09 -2.39 -0.02 3.40 16 42 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 43 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.06 1.86 7.76 -2.38 -0.02 1.84 16 45 H 0.07 1.97 8.03 -2.39 -0.02 1.95 16 46 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -80.89 389.21 0.77 -80.12 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.42 Total: 37.02 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: 9.38 Total: 36.09 kcal Atomic # 7 Polarization: -132.06 SS G_CDS: -10.09 Total: -142.15 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -0.12 Total: -56.79 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -80.89 0.77 -80.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187127488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.801 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds