Wall clock time and date at job start Tue Mar 31 2020 18:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47023 * 2 1 4 4 C 1.34261 * 125.75461 * 125.27466 * 3 2 1 5 5 C 1.38045 * 107.41834 * 180.18603 * 4 3 2 6 6 C 1.47425 * 126.41723 * 179.87306 * 5 4 3 7 7 O 1.21605 * 119.99823 * 359.70626 * 6 5 4 8 8 N 1.34774 * 119.99987 * 179.70761 * 6 5 4 9 9 C 1.46505 * 119.99845 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.87207 * 328.84574 * 9 8 6 11 11 C 1.55138 * 111.02315 * 92.71036 * 9 8 6 12 12 C 1.54318 * 103.01792 * 153.75854 * 11 9 8 13 13 N 1.47446 * 107.23303 * 337.71992 * 12 11 9 14 14 C 1.46897 * 110.99737 * 236.74038 * 13 12 11 15 15 C 1.50707 * 109.47188 * 290.12321 * 14 13 12 16 16 O 1.21289 * 119.99839 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99668 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99497 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00286 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99944 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99588 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00272 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47380 * 59.99517 * 22 20 18 24 24 H 1.48498 * 109.47613 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47006 * 299.99570 * 22 20 18 26 26 C 1.47840 * 108.56768 * 359.00691 * 13 12 11 27 27 C 1.41298 * 107.16832 * 359.60178 * 5 4 3 28 28 N 1.30452 * 108.02340 * 0.24684 * 27 5 4 29 29 H 1.08997 * 109.46967 * 300.00256 * 1 2 3 30 30 H 1.09007 * 109.47169 * 59.99606 * 1 2 3 31 31 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47215 * 240.00457 * 2 1 3 33 33 H 1.08994 * 109.47293 * 119.99810 * 2 1 3 34 34 H 1.07999 * 126.29247 * 0.02839 * 4 3 2 35 35 H 0.96992 * 120.00298 * 359.97438 * 8 6 5 36 36 H 1.09003 * 110.70420 * 35.38233 * 11 9 8 37 37 H 1.09002 * 110.71153 * 272.14222 * 11 9 8 38 38 H 1.08996 * 109.89415 * 218.31078 * 12 11 9 39 39 H 1.09001 * 109.88767 * 97.12302 * 12 11 9 40 40 H 1.08995 * 109.47403 * 50.12410 * 14 13 12 41 41 H 1.09000 * 109.46981 * 170.12871 * 14 13 12 42 42 H 0.96997 * 120.00587 * 0.02562 * 17 15 14 43 43 H 0.97003 * 119.99671 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.37675 * 142.92257 * 26 13 12 45 45 H 1.08993 * 110.37873 * 265.15861 * 26 13 12 46 46 H 1.07993 * 125.98719 * 180.23912 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8731 1.9112 0.8895 5 6 3.0701 3.2314 0.5374 6 6 3.9314 4.2039 1.2344 7 8 4.5496 3.8673 2.2261 8 7 4.0336 5.4659 0.7726 9 6 4.8891 6.4324 1.4656 10 1 4.9264 6.2218 2.5344 11 6 6.3144 6.4534 0.8534 12 6 6.8113 7.8779 1.1780 13 7 5.6189 8.7167 1.3988 14 6 5.6133 9.8725 0.4922 15 6 6.7041 10.8316 0.8940 16 8 7.4165 10.5770 1.8421 17 7 6.8880 11.9721 0.1999 18 6 7.8807 12.8443 0.5651 19 1 8.5155 12.6173 1.4088 20 6 8.0700 14.0204 -0.1501 21 7 7.2978 14.2964 -1.1770 22 14 9.4229 15.2085 0.3470 23 1 10.7379 14.5234 0.2656 24 1 9.4167 16.3773 -0.5689 25 1 9.1902 15.6691 1.7395 26 6 4.4139 7.8831 1.2020 27 6 2.2965 3.4743 -0.6198 28 7 1.6763 2.3694 -0.9300 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3218 1.3995 1.7280 35 1 3.5408 5.7342 -0.0186 36 1 6.2733 6.2960 -0.2245 37 1 6.9494 5.7060 1.3291 38 1 7.3898 8.2687 0.3410 39 1 7.4243 7.8604 2.0791 40 1 5.7855 9.5338 -0.5294 41 1 4.6479 10.3752 0.5505 42 1 6.3181 12.1759 -0.5581 43 1 7.4302 15.1173 -1.6766 44 1 3.6380 8.1634 1.9144 45 1 4.0453 7.9838 0.1813 46 1 2.2303 4.4107 -1.1537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265275835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:46 Heat of formation + Delta-G solvation = 15.277124 kcal Electronic energy + Delta-G solvation = -27633.678730 eV Core-core repulsion = 23560.180213 eV Total energy + Delta-G solvation = -4073.498517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77297 -39.84902 -38.67984 -37.39788 -35.05122 -34.42748 -33.75648 -31.39080 -31.01937 -30.92643 -29.89858 -28.40565 -26.47904 -24.59682 -24.13029 -23.22017 -21.27433 -21.05375 -20.86062 -20.24198 -19.03163 -18.30665 -17.81410 -16.53357 -16.41827 -16.12207 -15.93624 -15.43637 -15.09908 -14.85233 -14.69670 -14.47830 -14.18499 -13.96281 -13.84829 -13.36422 -13.26900 -13.19668 -13.01999 -12.95846 -12.69923 -12.24073 -12.07653 -11.85382 -11.64473 -11.48247 -11.41983 -11.29319 -11.16295 -10.96095 -10.55842 -10.41323 -10.17726 -10.03734 -10.02683 -9.45277 -9.26477 -8.97188 -8.41773 -7.92939 -7.87124 -6.37956 -3.78497 1.17280 1.81560 1.85967 3.01200 3.23070 3.26251 3.28302 3.33065 3.87047 3.95518 4.11919 4.29339 4.30721 4.33415 4.42679 4.56472 4.59223 4.73835 4.80120 4.92223 5.03265 5.10976 5.19372 5.20173 5.29120 5.30787 5.36578 5.46879 5.51328 5.68179 5.78634 5.83735 5.96795 5.99452 6.04467 6.14312 6.32599 6.36991 6.38509 6.53105 7.10155 7.24805 7.25527 7.40494 7.58707 8.10207 8.13825 8.66391 9.22376 9.58870 10.11280 10.79877 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.001671 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.393583 B =16755.529654 C =17214.310120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.294 4.294 6 C 0.597 3.403 7 O -0.548 6.548 8 N -0.717 5.717 9 C 0.138 3.862 10 H 0.108 0.892 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.502 5.502 14 C 0.041 3.959 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.567 5.567 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.037 3.963 27 C 0.081 3.919 28 N -0.295 5.295 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.398 0.602 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.699 -27.198 -1.950 30.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.023 4.023 5 C -0.309 4.309 6 C 0.385 3.615 7 O -0.426 6.426 8 N -0.367 5.367 9 C 0.033 3.967 10 H 0.126 0.874 11 C -0.194 4.194 12 C -0.070 4.070 13 N -0.226 5.226 14 C -0.090 4.090 15 C 0.229 3.771 16 O -0.458 6.458 17 N -0.204 5.204 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.091 4.091 27 C -0.107 4.107 28 N -0.114 5.114 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.628 -27.951 -1.040 31.564 hybrid contribution 0.591 1.087 -1.088 1.648 sum -14.036 -26.864 -2.128 30.384 Atomic orbital electron populations 1.22061 0.93288 1.03210 1.03840 1.21855 0.96530 0.76776 1.04372 1.48672 1.34082 1.10684 1.20599 1.23011 0.91392 0.93591 0.94327 1.20263 1.11692 0.95396 1.03524 1.17206 0.80030 0.81227 0.83062 1.90787 1.46946 1.78593 1.26300 1.45665 1.48799 1.10609 1.31663 1.22107 0.89129 0.87081 0.98373 0.87379 1.23251 0.96639 0.98674 1.00844 1.22702 0.92841 0.89279 1.02156 1.63230 1.00984 1.06758 1.51644 1.22091 1.00202 0.92749 0.94001 1.19735 0.87454 0.83759 0.86128 1.90526 1.49014 1.76352 1.29930 1.41849 1.31684 1.17670 1.29182 1.19650 1.10105 0.98921 1.14088 0.87995 1.25240 0.98674 0.98153 0.95878 1.69607 1.39146 1.26446 1.19316 0.85925 0.80770 0.79206 0.78354 1.19968 1.21032 1.19908 1.23263 0.94463 0.90942 1.00463 1.24084 0.94126 0.97500 0.94982 1.77152 1.23841 0.97108 1.13346 0.91890 0.90884 0.90377 0.89214 0.88138 0.79500 0.76769 0.91454 0.90353 0.92400 0.89612 0.93266 0.89369 0.77558 0.91905 0.89544 0.93298 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.09 37.16 0.37 -0.21 16 2 C 0.13 0.46 7.21 -4.04 -0.03 0.43 16 3 N -0.36 -2.63 3.65 -60.81 -0.22 -2.85 16 4 C 0.13 1.02 11.25 -16.56 -0.19 0.83 16 5 C -0.29 -2.75 6.13 -105.06 -0.64 -3.40 16 6 C 0.60 6.87 7.81 -12.52 -0.10 6.77 16 7 O -0.55 -8.30 16.54 5.27 0.09 -8.21 16 8 N -0.72 -6.99 5.19 -52.81 -0.27 -7.26 16 9 C 0.14 1.65 3.42 -65.79 -0.22 1.43 16 10 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 11 C -0.15 -1.97 6.64 -24.91 -0.17 -2.13 16 12 C 0.06 0.94 5.65 -2.83 -0.02 0.92 16 13 N -0.50 -8.30 4.85 -232.70 -1.13 -9.43 16 14 C 0.04 0.73 5.03 -4.97 -0.03 0.70 16 15 C 0.44 10.52 7.43 -10.98 -0.08 10.44 16 16 O -0.57 -15.68 15.12 5.55 0.08 -15.60 16 17 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 C 0.04 0.46 6.33 -2.30 -0.01 0.44 16 27 C 0.08 0.65 11.50 -16.98 -0.20 0.46 16 28 N -0.29 -2.66 12.33 30.86 0.38 -2.28 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.12 8.06 -51.93 -0.42 -0.30 16 34 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.40 2.76 7.52 -40.82 -0.31 2.45 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.05 0.78 7.96 -51.93 -0.41 0.37 16 41 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 46 H 0.19 0.92 7.50 -52.49 -0.39 0.53 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -35.97 388.75 -7.88 -43.85 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.76 Total: 9.42 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.55 Total: 8.67 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.58 Total: -60.18 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.97 -7.88 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265275835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.127 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds