Wall clock time and date at job start Tue Mar 31 2020 18:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47023 * 2 1 4 4 C 1.34261 * 125.75461 * 125.27466 * 3 2 1 5 5 C 1.38045 * 107.41834 * 180.18603 * 4 3 2 6 6 C 1.47425 * 126.41723 * 179.87306 * 5 4 3 7 7 O 1.21605 * 119.99823 * 359.70626 * 6 5 4 8 8 N 1.34774 * 119.99987 * 179.70761 * 6 5 4 9 9 C 1.46505 * 119.99845 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.87207 * 328.84574 * 9 8 6 11 11 C 1.55138 * 111.02315 * 92.71036 * 9 8 6 12 12 C 1.54318 * 103.01792 * 153.75854 * 11 9 8 13 13 N 1.47446 * 107.23303 * 337.71992 * 12 11 9 14 14 C 1.46897 * 110.99737 * 236.74038 * 13 12 11 15 15 C 1.50707 * 109.47188 * 290.12321 * 14 13 12 16 16 O 1.21289 * 119.99839 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99668 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99497 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00286 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99944 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99588 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00272 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47380 * 59.99517 * 22 20 18 24 24 H 1.48498 * 109.47613 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47006 * 299.99570 * 22 20 18 26 26 C 1.47840 * 108.56768 * 359.00691 * 13 12 11 27 27 C 1.41298 * 107.16832 * 359.60178 * 5 4 3 28 28 N 1.30452 * 108.02340 * 0.24684 * 27 5 4 29 29 H 1.08997 * 109.46967 * 300.00256 * 1 2 3 30 30 H 1.09007 * 109.47169 * 59.99606 * 1 2 3 31 31 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47215 * 240.00457 * 2 1 3 33 33 H 1.08994 * 109.47293 * 119.99810 * 2 1 3 34 34 H 1.07999 * 126.29247 * 0.02839 * 4 3 2 35 35 H 0.96992 * 120.00298 * 359.97438 * 8 6 5 36 36 H 1.09003 * 110.70420 * 35.38233 * 11 9 8 37 37 H 1.09002 * 110.71153 * 272.14222 * 11 9 8 38 38 H 1.08996 * 109.89415 * 218.31078 * 12 11 9 39 39 H 1.09001 * 109.88767 * 97.12302 * 12 11 9 40 40 H 1.08995 * 109.47403 * 50.12410 * 14 13 12 41 41 H 1.09000 * 109.46981 * 170.12871 * 14 13 12 42 42 H 0.96997 * 120.00587 * 0.02562 * 17 15 14 43 43 H 0.97003 * 119.99671 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.37675 * 142.92257 * 26 13 12 45 45 H 1.08993 * 110.37873 * 265.15861 * 26 13 12 46 46 H 1.07993 * 125.98719 * 180.23912 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8731 1.9112 0.8895 5 6 3.0701 3.2314 0.5374 6 6 3.9314 4.2039 1.2344 7 8 4.5496 3.8673 2.2261 8 7 4.0336 5.4659 0.7726 9 6 4.8891 6.4324 1.4656 10 1 4.9264 6.2218 2.5344 11 6 6.3144 6.4534 0.8534 12 6 6.8113 7.8779 1.1780 13 7 5.6189 8.7167 1.3988 14 6 5.6133 9.8725 0.4922 15 6 6.7041 10.8316 0.8940 16 8 7.4165 10.5770 1.8421 17 7 6.8880 11.9721 0.1999 18 6 7.8807 12.8443 0.5651 19 1 8.5155 12.6173 1.4088 20 6 8.0700 14.0204 -0.1501 21 7 7.2978 14.2964 -1.1770 22 14 9.4229 15.2085 0.3470 23 1 10.7379 14.5234 0.2656 24 1 9.4167 16.3773 -0.5689 25 1 9.1902 15.6691 1.7395 26 6 4.4139 7.8831 1.2020 27 6 2.2965 3.4743 -0.6198 28 7 1.6763 2.3694 -0.9300 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.3218 1.3995 1.7280 35 1 3.5408 5.7342 -0.0186 36 1 6.2733 6.2960 -0.2245 37 1 6.9494 5.7060 1.3291 38 1 7.3898 8.2687 0.3410 39 1 7.4243 7.8604 2.0791 40 1 5.7855 9.5338 -0.5294 41 1 4.6479 10.3752 0.5505 42 1 6.3181 12.1759 -0.5581 43 1 7.4302 15.1173 -1.6766 44 1 3.6380 8.1634 1.9144 45 1 4.0453 7.9838 0.1813 46 1 2.2303 4.4107 -1.1537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265275835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:45 Heat of formation + Delta-G solvation = -13.109400 kcal Electronic energy + Delta-G solvation = -27634.909662 eV Core-core repulsion = 23560.180213 eV Total energy + Delta-G solvation = -4074.729449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.36814 -40.94451 -40.07673 -38.87773 -35.98010 -35.54237 -35.20611 -33.26998 -32.25534 -31.53114 -30.62221 -29.47455 -28.00077 -26.01861 -24.93240 -23.96217 -22.33970 -22.08040 -21.53984 -21.12884 -20.74361 -19.81543 -18.95899 -17.68419 -17.51822 -17.21004 -16.65405 -16.59342 -16.43043 -16.04853 -15.76224 -15.59975 -15.36093 -15.27659 -14.70886 -14.63018 -14.43227 -14.35537 -13.82137 -13.69066 -13.52464 -13.38110 -13.25137 -12.98569 -12.93196 -12.73883 -12.51602 -12.41203 -12.39521 -12.30641 -12.10434 -11.90129 -11.73231 -11.46412 -10.93025 -10.58921 -10.29588 -10.15081 -9.97328 -9.64092 -9.19739 -8.43784 -5.91996 0.54236 1.18178 1.39672 1.41304 1.42886 1.53547 2.10175 2.14287 2.32621 2.47096 2.93429 3.23255 3.36776 3.47430 3.59110 3.79783 3.80811 4.01392 4.07024 4.08035 4.11369 4.30119 4.32831 4.35936 4.38219 4.42529 4.48173 4.56380 4.67438 4.73913 4.80794 4.88334 4.89183 4.99664 5.05244 5.21646 5.22077 5.42713 5.43487 5.51896 5.88670 5.89052 6.03361 6.13901 6.50484 6.64644 6.66115 7.16625 7.31645 7.60704 8.17427 8.73369 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.001671 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.393583 B =16755.529654 C =17214.310120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.131 3.869 5 C -0.316 4.316 6 C 0.598 3.402 7 O -0.592 6.592 8 N -0.702 5.702 9 C 0.148 3.852 10 H 0.086 0.914 11 C -0.141 4.141 12 C 0.062 3.938 13 N -0.528 5.528 14 C 0.055 3.945 15 C 0.439 3.561 16 O -0.617 6.617 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.044 3.956 27 C 0.086 3.914 28 N -0.322 5.322 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.205 0.795 35 H 0.415 0.585 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 -28.145 -3.265 32.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.022 4.022 5 C -0.331 4.331 6 C 0.387 3.613 7 O -0.473 6.473 8 N -0.353 5.353 9 C 0.042 3.958 10 H 0.104 0.896 11 C -0.181 4.181 12 C -0.067 4.067 13 N -0.252 5.252 14 C -0.076 4.076 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.213 5.213 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.084 4.084 27 C -0.101 4.101 28 N -0.142 5.142 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.221 0.779 35 H 0.253 0.747 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.174 -28.911 -2.414 33.215 hybrid contribution 1.013 1.284 -0.652 1.761 sum -15.161 -27.627 -3.066 31.662 Atomic orbital electron populations 1.22019 0.93225 1.04233 1.02387 1.22237 0.96593 0.75311 1.06249 1.48984 1.33403 1.11489 1.19777 1.23348 0.90904 0.93468 0.94507 1.20185 1.12706 0.95664 1.04572 1.17502 0.79597 0.81692 0.82479 1.90767 1.48863 1.79380 1.28299 1.45446 1.48230 1.09745 1.31881 1.21798 0.89026 0.87634 0.97361 0.89613 1.23120 0.96918 0.96110 1.01912 1.22532 0.92708 0.91346 1.00077 1.63102 1.02559 1.07440 1.52145 1.21948 0.98566 0.91917 0.95168 1.20865 0.87902 0.83710 0.84843 1.90499 1.50899 1.77208 1.31703 1.41909 1.31545 1.18155 1.29697 1.19608 1.11532 1.00663 1.14504 0.90528 1.25984 1.00549 0.99018 0.95580 1.69663 1.39892 1.26981 1.19561 0.85021 0.77960 0.77372 0.78174 1.19848 1.19427 1.19855 1.23287 0.92665 0.89793 1.02645 1.24498 0.92991 0.98268 0.94368 1.77121 1.24747 0.97834 1.14453 0.92842 0.92715 0.88138 0.88274 0.85374 0.77874 0.74736 0.89581 0.90995 0.93926 0.92683 0.90716 0.86802 0.76968 0.91358 0.88705 0.90088 0.76758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 10.09 71.98 0.73 -0.15 16 2 C 0.11 0.60 7.21 86.38 0.62 1.22 16 3 N -0.36 -4.60 3.65 -346.29 -1.26 -5.87 16 4 C 0.13 1.88 11.25 84.28 0.95 2.82 16 5 C -0.32 -5.45 6.13 -20.15 -0.12 -5.57 16 6 C 0.60 13.09 7.81 86.66 0.68 13.77 16 7 O -0.59 -17.86 16.54 -4.05 -0.07 -17.93 16 8 N -0.70 -12.23 5.19 -439.24 -2.28 -14.51 16 9 C 0.15 3.34 3.42 46.37 0.16 3.50 16 10 H 0.09 2.38 7.54 -2.38 -0.02 2.36 16 11 C -0.14 -3.48 6.64 31.77 0.21 -3.27 16 12 C 0.06 2.01 5.65 86.65 0.49 2.50 16 13 N -0.53 -16.94 4.85 -890.12 -4.32 -21.26 16 14 C 0.06 1.86 5.03 85.56 0.43 2.29 16 15 C 0.44 21.04 7.43 87.66 0.65 21.69 16 16 O -0.62 -34.82 15.12 -3.06 -0.05 -34.87 16 17 N -0.58 -29.57 5.29 -306.98 -1.62 -31.19 16 18 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.61 13.05 21.66 0.28 -49.32 16 22 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C 0.04 0.96 6.33 86.77 0.55 1.50 16 27 C 0.09 1.21 11.50 85.65 0.99 2.20 16 28 N -0.32 -5.30 12.33 -56.27 -0.69 -5.99 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.13 -0.05 8.06 -2.39 -0.02 -0.07 16 34 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.42 4.40 7.52 -92.71 -0.70 3.70 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.49 7.31 -2.39 -0.02 1.47 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.17 7.96 -2.39 -0.02 2.15 16 41 H 0.11 3.27 8.07 -2.39 -0.02 3.26 16 42 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 43 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 1.30 7.67 -2.39 -0.02 1.28 16 46 H 0.22 1.46 7.50 -2.91 -0.02 1.44 16 Total: -1.00 -80.43 388.75 -0.79 -81.22 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.41 Total: 30.32 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 7.61 Total: 24.06 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -9.90 Total: -128.15 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.11 Total: -52.80 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -80.43 -0.79 -81.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265275835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.109 kcal (2) G-P(sol) polarization free energy of solvation -80.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds