Wall clock time and date at job start Tue Mar 31 2020 18:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47308 * 2 1 4 4 C 1.35033 * 124.88679 * 125.02478 * 3 2 1 5 5 C 1.35361 * 107.23120 * 179.72326 * 4 3 2 6 6 C 1.41504 * 105.50223 * 0.41483 * 5 4 3 7 7 C 1.47707 * 126.51920 * 179.84196 * 6 5 4 8 8 O 1.21573 * 120.00265 * 359.71085 * 7 6 5 9 9 N 1.34779 * 120.00384 * 179.71856 * 7 6 5 10 10 C 1.46498 * 120.00374 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.90276 * 37.40785 * 10 9 7 12 12 C 1.55136 * 110.99021 * 273.53909 * 10 9 7 13 13 C 1.54316 * 103.02142 * 206.25421 * 12 10 9 14 14 N 1.47445 * 107.22955 * 22.28484 * 13 12 10 15 15 C 1.46902 * 110.99993 * 123.25758 * 14 13 12 16 16 C 1.50702 * 109.47027 * 69.87046 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00084 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00035 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99834 * 23 21 19 27 27 C 1.47847 * 108.56981 * 0.98987 * 14 13 12 28 28 N 1.28474 * 124.88415 * 305.02200 * 3 2 1 29 29 H 1.08996 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46776 * 300.00226 * 1 2 3 31 31 H 1.08993 * 109.46828 * 59.99926 * 1 2 3 32 32 H 1.08998 * 109.46776 * 239.99773 * 2 1 3 33 33 H 1.09003 * 109.47006 * 120.00168 * 2 1 3 34 34 H 1.08002 * 126.38331 * 0.02562 * 4 3 2 35 35 H 1.08001 * 127.25401 * 180.25688 * 5 4 3 36 36 H 0.97008 * 119.99177 * 359.97438 * 9 7 6 37 37 H 1.09003 * 110.70332 * 87.87161 * 12 10 9 38 38 H 1.08996 * 110.85677 * 324.70927 * 12 10 9 39 39 H 1.08996 * 109.89058 * 262.88273 * 13 12 10 40 40 H 1.08994 * 109.88860 * 141.68888 * 13 12 10 41 41 H 1.09004 * 109.47131 * 309.87290 * 15 14 13 42 42 H 1.08994 * 109.47471 * 189.87039 * 15 14 13 43 43 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 44 44 H 0.96991 * 119.99827 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.37141 * 94.73522 * 27 14 13 46 46 H 1.09002 * 110.37215 * 217.07516 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8752 1.8973 0.9071 5 6 3.0879 3.1903 0.5673 6 6 2.3003 3.4124 -0.5871 7 6 2.1853 4.6762 -1.3429 8 8 2.8024 5.6592 -0.9811 9 7 1.3962 4.7398 -2.4337 10 6 1.2826 5.9932 -3.1836 11 1 2.2404 6.5121 -3.2211 12 6 0.1805 6.9035 -2.5809 13 6 -0.2617 7.7590 -3.7867 14 7 0.1075 7.0180 -5.0067 15 6 -1.0670 6.7875 -5.8585 16 6 -1.5190 8.0954 -6.4554 17 8 -0.9213 9.1187 -6.1972 18 7 -2.5876 8.1279 -7.2763 19 6 -2.9984 9.3176 -7.8197 20 1 -2.4657 10.2287 -7.5904 21 6 -4.0965 9.3502 -8.6706 22 7 -4.7444 8.2416 -8.9501 23 14 -4.6517 10.9700 -9.4172 24 1 -3.9557 11.1828 -10.7116 25 1 -6.1188 10.9333 -9.6443 26 1 -4.3221 12.0815 -8.4892 27 6 0.7332 5.7387 -4.6095 28 7 1.6931 2.2755 -0.8631 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3134 1.3746 1.7444 35 1 3.7228 3.9031 1.0725 36 1 0.9040 3.9554 -2.7225 37 1 0.5901 7.5332 -1.7911 38 1 -0.6516 6.3084 -2.2047 39 1 0.2513 8.7205 -3.7672 40 1 -1.3406 7.9112 -3.7575 41 1 -1.8729 6.3639 -5.2591 42 1 -0.8057 6.0943 -6.6579 43 1 -3.0653 7.3094 -7.4831 44 1 -5.5111 8.2644 -9.5437 45 1 -0.0103 4.9417 -4.5931 46 1 1.5463 5.4865 -5.2901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265306395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:49 Heat of formation + Delta-G solvation = 20.419948 kcal Electronic energy + Delta-G solvation = -27884.534559 eV Core-core repulsion = 23811.259052 eV Total energy + Delta-G solvation = -4073.275508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.00317 -39.94352 -38.73123 -37.41024 -35.03424 -34.47293 -33.75939 -31.47719 -31.14384 -30.78561 -30.21526 -28.49683 -26.58902 -25.13068 -24.10777 -22.78275 -21.78430 -21.06944 -20.95814 -20.09452 -19.01801 -18.24162 -17.80574 -17.03262 -16.57945 -16.26523 -15.93982 -15.52711 -15.08889 -14.79722 -14.62926 -14.47241 -14.06867 -13.96871 -13.88738 -13.60536 -13.31423 -13.12024 -13.02589 -12.91996 -12.70008 -12.24204 -12.01243 -11.85354 -11.59536 -11.46427 -11.35692 -11.24225 -11.14502 -10.97450 -10.54297 -10.36291 -10.27533 -10.17636 -9.63765 -9.45806 -9.42665 -9.12132 -8.41085 -7.92448 -7.86580 -6.37629 -3.78017 1.29751 1.81284 2.01294 2.94576 3.21025 3.25105 3.29207 3.35417 3.84135 3.95977 4.10651 4.27370 4.29146 4.37975 4.43033 4.53709 4.57475 4.76683 4.87317 5.02693 5.11756 5.16358 5.20998 5.29674 5.31890 5.37382 5.43636 5.48854 5.52180 5.67862 5.79573 5.85063 5.98290 6.04527 6.05912 6.15429 6.32676 6.35222 6.39102 6.54600 7.23158 7.26075 7.31055 7.59327 7.60073 8.07581 8.10862 8.66864 9.22904 9.59382 10.11782 10.80338 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.001869 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.206539 B =14980.329893 C =15895.576601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.282 5.282 4 C -0.021 4.021 5 C -0.178 4.178 6 C -0.017 4.017 7 C 0.606 3.394 8 O -0.529 6.529 9 N -0.708 5.708 10 C 0.137 3.863 11 H 0.107 0.893 12 C -0.154 4.154 13 C 0.058 3.942 14 N -0.501 5.501 15 C 0.041 3.959 16 C 0.445 3.555 17 O -0.575 6.575 18 N -0.567 5.567 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.020 3.980 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.038 3.962 28 N -0.259 5.259 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.405 0.595 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.050 0.950 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -21.841 19.613 31.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.071 5.071 4 C -0.163 4.163 5 C -0.206 4.206 6 C -0.177 4.177 7 C 0.390 3.610 8 O -0.403 6.403 9 N -0.360 5.360 10 C 0.032 3.968 11 H 0.125 0.875 12 C -0.194 4.194 13 C -0.069 4.069 14 N -0.226 5.226 15 C -0.091 4.091 16 C 0.230 3.770 17 O -0.458 6.458 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.090 4.090 28 N -0.095 5.095 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.199 0.801 35 H 0.180 0.820 36 H 0.240 0.760 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.459 -20.768 18.862 30.305 hybrid contribution -1.009 -0.468 0.358 1.169 sum 10.449 -21.236 19.220 30.489 Atomic orbital electron populations 1.22086 0.92932 1.03543 1.04073 1.22034 0.96842 0.76648 1.04830 1.45641 1.32342 1.10397 1.18706 1.22889 0.99213 0.95562 0.98649 1.21798 1.04351 0.96128 0.98345 1.21960 1.02834 0.93124 0.99817 1.16867 0.78937 0.85401 0.79753 1.90813 1.45970 1.35674 1.67892 1.45774 1.47587 1.14387 1.28207 1.22147 1.00402 0.84129 0.90105 0.87541 1.23248 0.98147 0.98796 0.99197 1.22705 1.00356 0.97894 0.85991 1.63245 1.27083 1.15667 1.16578 1.22094 0.91709 0.97830 0.97435 1.19734 0.83349 0.89869 0.84076 1.90528 1.56830 1.34787 1.63625 1.41858 1.26268 1.10638 1.41684 1.19698 1.11136 0.87838 1.23920 0.87934 1.25253 0.96550 0.98705 0.97562 1.69612 1.21022 1.26830 1.37078 0.85862 0.77491 0.81607 0.79350 1.20433 1.21008 1.19443 1.23251 0.99082 0.92128 0.94565 1.73441 1.22146 0.98068 1.15880 0.90126 0.91804 0.90631 0.88763 0.87837 0.80111 0.81991 0.75951 0.90183 0.91462 0.89534 0.92377 0.93258 0.89350 0.77562 0.91965 0.93217 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.02 37.16 0.37 -0.22 16 2 C 0.12 0.37 7.12 -4.04 -0.03 0.34 16 3 N -0.28 -2.00 3.41 -61.33 -0.21 -2.21 16 4 C -0.02 -0.14 11.40 -17.17 -0.20 -0.33 16 5 C -0.18 -1.68 10.81 -39.36 -0.43 -2.10 16 6 C -0.02 -0.20 7.13 -82.77 -0.59 -0.79 16 7 C 0.61 8.00 7.82 -12.39 -0.10 7.91 16 8 O -0.53 -8.61 16.67 5.30 0.09 -8.52 16 9 N -0.71 -8.16 5.23 -52.72 -0.28 -8.43 16 10 C 0.14 1.77 3.31 -65.80 -0.22 1.55 16 11 H 0.11 1.52 7.73 -51.93 -0.40 1.12 16 12 C -0.15 -2.10 6.64 -24.91 -0.17 -2.27 16 13 C 0.06 0.97 5.65 -2.84 -0.02 0.96 16 14 N -0.50 -8.55 4.85 -232.69 -1.13 -9.68 16 15 C 0.04 0.74 5.03 -4.97 -0.03 0.72 16 16 C 0.44 10.67 7.43 -10.98 -0.08 10.58 16 17 O -0.57 -15.82 15.12 5.55 0.08 -15.74 16 18 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 22 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 23 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.04 0.50 6.31 -2.30 -0.01 0.48 16 28 N -0.26 -2.56 11.36 33.42 0.38 -2.18 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.04 8.04 -51.93 -0.42 -0.38 16 34 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.41 3.97 8.24 -40.82 -0.34 3.63 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.06 1.03 7.31 -51.93 -0.38 0.65 16 41 H 0.05 0.81 7.96 -51.93 -0.41 0.39 16 42 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 43 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -35.59 389.26 -8.10 -43.69 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.82 Total: 10.79 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.73 Total: 8.78 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.57 Total: -61.18 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.17 Total: -24.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.59 -8.10 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265306395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.107 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds