Wall clock time and date at job start Tue Mar 31 2020 18:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47308 * 2 1 4 4 C 1.35033 * 124.88679 * 125.02478 * 3 2 1 5 5 C 1.35361 * 107.23120 * 179.72326 * 4 3 2 6 6 C 1.41504 * 105.50223 * 0.41483 * 5 4 3 7 7 C 1.47707 * 126.51920 * 179.84196 * 6 5 4 8 8 O 1.21573 * 120.00265 * 359.71085 * 7 6 5 9 9 N 1.34779 * 120.00384 * 179.71856 * 7 6 5 10 10 C 1.46498 * 120.00374 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.90276 * 37.40785 * 10 9 7 12 12 C 1.55136 * 110.99021 * 273.53909 * 10 9 7 13 13 C 1.54316 * 103.02142 * 206.25421 * 12 10 9 14 14 N 1.47445 * 107.22955 * 22.28484 * 13 12 10 15 15 C 1.46902 * 110.99993 * 123.25758 * 14 13 12 16 16 C 1.50702 * 109.47027 * 69.87046 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00084 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00035 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99834 * 23 21 19 27 27 C 1.47847 * 108.56981 * 0.98987 * 14 13 12 28 28 N 1.28474 * 124.88415 * 305.02200 * 3 2 1 29 29 H 1.08996 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46776 * 300.00226 * 1 2 3 31 31 H 1.08993 * 109.46828 * 59.99926 * 1 2 3 32 32 H 1.08998 * 109.46776 * 239.99773 * 2 1 3 33 33 H 1.09003 * 109.47006 * 120.00168 * 2 1 3 34 34 H 1.08002 * 126.38331 * 0.02562 * 4 3 2 35 35 H 1.08001 * 127.25401 * 180.25688 * 5 4 3 36 36 H 0.97008 * 119.99177 * 359.97438 * 9 7 6 37 37 H 1.09003 * 110.70332 * 87.87161 * 12 10 9 38 38 H 1.08996 * 110.85677 * 324.70927 * 12 10 9 39 39 H 1.08996 * 109.89058 * 262.88273 * 13 12 10 40 40 H 1.08994 * 109.88860 * 141.68888 * 13 12 10 41 41 H 1.09004 * 109.47131 * 309.87290 * 15 14 13 42 42 H 1.08994 * 109.47471 * 189.87039 * 15 14 13 43 43 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 44 44 H 0.96991 * 119.99827 * 179.97438 * 22 21 19 45 45 H 1.09002 * 110.37141 * 94.73522 * 27 14 13 46 46 H 1.09002 * 110.37215 * 217.07516 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8752 1.8973 0.9071 5 6 3.0879 3.1903 0.5673 6 6 2.3003 3.4124 -0.5871 7 6 2.1853 4.6762 -1.3429 8 8 2.8024 5.6592 -0.9811 9 7 1.3962 4.7398 -2.4337 10 6 1.2826 5.9932 -3.1836 11 1 2.2404 6.5121 -3.2211 12 6 0.1805 6.9035 -2.5809 13 6 -0.2617 7.7590 -3.7867 14 7 0.1075 7.0180 -5.0067 15 6 -1.0670 6.7875 -5.8585 16 6 -1.5190 8.0954 -6.4554 17 8 -0.9213 9.1187 -6.1972 18 7 -2.5876 8.1279 -7.2763 19 6 -2.9984 9.3176 -7.8197 20 1 -2.4657 10.2287 -7.5904 21 6 -4.0965 9.3502 -8.6706 22 7 -4.7444 8.2416 -8.9501 23 14 -4.6517 10.9700 -9.4172 24 1 -3.9557 11.1828 -10.7116 25 1 -6.1188 10.9333 -9.6443 26 1 -4.3221 12.0815 -8.4892 27 6 0.7332 5.7387 -4.6095 28 7 1.6931 2.2755 -0.8631 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3134 1.3746 1.7444 35 1 3.7228 3.9031 1.0725 36 1 0.9040 3.9554 -2.7225 37 1 0.5901 7.5332 -1.7911 38 1 -0.6516 6.3084 -2.2047 39 1 0.2513 8.7205 -3.7672 40 1 -1.3406 7.9112 -3.7575 41 1 -1.8729 6.3639 -5.2591 42 1 -0.8057 6.0943 -6.6579 43 1 -3.0653 7.3094 -7.4831 44 1 -5.5111 8.2644 -9.5437 45 1 -0.0103 4.9417 -4.5931 46 1 1.5463 5.4865 -5.2901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265306395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:49 Heat of formation + Delta-G solvation = -7.753125 kcal Electronic energy + Delta-G solvation = -27885.756235 eV Core-core repulsion = 23811.259052 eV Total energy + Delta-G solvation = -4074.497184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.60943 -41.10464 -40.21966 -38.97590 -36.01465 -35.51184 -35.36838 -33.29316 -32.37306 -31.59584 -30.88990 -29.64870 -28.13417 -26.21468 -25.52674 -23.42945 -22.48253 -22.27959 -22.02050 -21.06441 -20.73718 -19.83624 -18.91507 -17.80323 -17.70252 -17.47856 -17.05745 -16.80281 -16.47463 -16.05794 -15.80895 -15.63250 -15.36355 -15.22200 -14.77184 -14.65120 -14.51211 -14.40887 -14.04998 -13.74625 -13.55622 -13.30139 -13.29160 -12.97623 -12.95288 -12.76727 -12.52361 -12.42120 -12.36270 -12.29661 -12.11661 -11.85095 -11.78761 -11.48521 -11.32973 -10.36407 -10.30856 -10.14500 -9.99109 -9.96953 -9.25771 -8.45400 -5.93588 0.51655 1.21522 1.38352 1.41730 1.53870 1.54836 2.00586 2.07709 2.30457 2.34198 2.86861 3.21349 3.29128 3.35410 3.51413 3.73376 3.90119 3.98457 4.01390 4.07255 4.20751 4.26720 4.29713 4.33252 4.39078 4.43861 4.52650 4.63169 4.73930 4.78881 4.81484 4.82872 4.89202 4.92655 4.97196 5.15766 5.24653 5.32938 5.41352 5.42325 5.84678 5.91340 5.98011 6.09495 6.39258 6.62774 6.90712 7.13089 7.14893 7.58445 8.15011 8.72079 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.001869 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.206539 B =14980.329893 C =15895.576601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.001 3.999 5 C -0.206 4.206 6 C -0.049 4.049 7 C 0.604 3.396 8 O -0.570 6.570 9 N -0.695 5.695 10 C 0.145 3.855 11 H 0.089 0.911 12 C -0.141 4.141 13 C 0.063 3.937 14 N -0.525 5.525 15 C 0.054 3.946 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.275 1.275 27 C 0.046 3.954 28 N -0.270 5.270 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.227 0.773 35 H 0.160 0.840 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.077 0.923 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -25.033 20.375 34.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.234 4.234 6 C -0.207 4.207 7 C 0.390 3.610 8 O -0.447 6.447 9 N -0.347 5.347 10 C 0.040 3.960 11 H 0.108 0.892 12 C -0.181 4.181 13 C -0.065 4.065 14 N -0.250 5.250 15 C -0.077 4.077 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.082 4.082 28 N -0.107 5.107 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.243 0.757 35 H 0.178 0.822 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.237 -24.024 19.608 32.983 hybrid contribution -0.926 0.412 0.179 1.029 sum 10.311 -23.612 19.787 32.487 Atomic orbital electron populations 1.22068 0.93330 1.04524 1.02491 1.22479 0.96531 0.74763 1.07279 1.46127 1.31499 1.11154 1.17780 1.23488 0.97534 0.94483 0.98684 1.22007 1.05127 0.97831 0.98466 1.21791 1.04909 0.93001 1.01012 1.17201 0.78271 0.85772 0.79752 1.90781 1.47639 1.37282 1.69027 1.45609 1.47281 1.14150 1.27638 1.21906 0.99245 0.84501 0.90387 0.89247 1.23112 0.98745 0.98506 0.97722 1.22534 0.99009 0.97532 0.87457 1.63138 1.26854 1.18123 1.16843 1.21957 0.92852 0.94432 0.98441 1.20812 0.82052 0.91632 0.82760 1.90501 1.57868 1.37123 1.64703 1.41915 1.27012 1.10111 1.42266 1.19639 1.12355 0.88170 1.25919 0.90494 1.26020 0.95975 1.02092 0.97263 1.69667 1.21162 1.28229 1.37091 0.84942 0.77656 0.77425 0.78391 1.19673 1.19471 1.19940 1.23267 0.99717 0.90866 0.94349 1.73381 1.22355 0.98086 1.16927 0.87890 0.92708 0.92835 0.87709 0.84051 0.75673 0.82201 0.74667 0.90785 0.90101 0.92261 0.93819 0.90877 0.86730 0.76976 0.91340 0.90511 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.02 71.98 0.72 -0.04 16 2 C 0.11 0.30 7.12 86.38 0.61 0.92 16 3 N -0.28 -3.19 3.41 -347.96 -1.19 -4.37 16 4 C 0.00 0.01 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.71 10.81 22.41 0.24 -3.47 16 6 C -0.05 -1.09 7.13 42.46 0.30 -0.79 16 7 C 0.60 16.18 7.82 86.75 0.68 16.86 16 8 O -0.57 -19.29 16.67 -3.95 -0.07 -19.36 16 9 N -0.70 -15.62 5.23 -438.99 -2.29 -17.92 16 10 C 0.15 3.70 3.31 46.38 0.15 3.85 16 11 H 0.09 2.63 7.73 -2.39 -0.02 2.61 16 12 C -0.14 -3.87 6.64 31.77 0.21 -3.66 16 13 C 0.06 2.15 5.65 86.65 0.49 2.64 16 14 N -0.52 -17.64 4.85 -890.10 -4.32 -21.96 16 15 C 0.05 1.90 5.03 85.56 0.43 2.33 16 16 C 0.44 21.45 7.43 87.66 0.65 22.10 16 17 O -0.62 -35.19 15.12 -3.07 -0.05 -35.24 16 18 N -0.58 -29.97 5.29 -306.97 -1.62 -31.59 16 19 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.06 13.05 21.67 0.28 -49.77 16 23 Si 0.99 43.70 29.55 68.60 2.03 45.72 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.05 1.10 6.31 86.77 0.55 1.65 16 28 N -0.27 -4.96 11.36 -48.18 -0.55 -5.50 16 29 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 32 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.14 -0.63 8.04 -2.39 -0.02 -0.65 16 34 H 0.23 0.03 8.06 -2.91 -0.02 0.01 16 35 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.42 7.56 8.24 -92.70 -0.76 6.80 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.04 1.59 7.31 -2.39 -0.02 1.57 16 41 H 0.07 2.24 7.96 -2.38 -0.02 2.22 16 42 H 0.11 3.43 8.07 -2.39 -0.02 3.41 16 43 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 46 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -80.68 389.26 -0.98 -81.66 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.48 Total: 33.59 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 7.28 Total: 24.74 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -9.69 Total: -131.12 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.11 Total: -54.60 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.68 -0.98 -81.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265306395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.907 kcal (2) G-P(sol) polarization free energy of solvation -80.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds