Wall clock time and date at job start Tue Mar 31 2020 18:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47107 * 2 1 4 4 C 1.34262 * 125.75584 * 125.27403 * 3 2 1 5 5 C 1.38042 * 107.41179 * 180.18316 * 4 3 2 6 6 C 1.47428 * 126.40956 * 179.87432 * 5 4 3 7 7 O 1.21608 * 120.00243 * 5.42009 * 6 5 4 8 8 N 1.34775 * 119.99994 * 185.42743 * 6 5 4 9 9 C 1.47428 * 125.65114 * 175.26759 * 8 6 5 10 10 C 1.54908 * 104.83369 * 204.17251 * 9 8 6 11 11 C 1.55152 * 101.58173 * 322.99369 * 10 9 8 12 12 H 1.09003 * 110.71781 * 277.13743 * 11 10 9 13 13 N 1.46900 * 110.71888 * 153.86735 * 11 10 9 14 14 C 1.46901 * 111.00127 * 155.00074 * 13 11 10 15 15 C 1.50700 * 109.47270 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99925 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99932 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00045 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99954 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00247 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00149 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99788 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47099 * 90.00268 * 22 20 18 24 24 H 1.48509 * 109.46871 * 209.99964 * 22 20 18 25 25 H 1.48491 * 109.47130 * 330.00170 * 22 20 18 26 26 C 1.47021 * 125.64757 * 355.32121 * 8 6 5 27 27 C 1.41292 * 107.17451 * 359.60073 * 5 4 3 28 28 N 1.30449 * 108.02157 * 0.24533 * 27 5 4 29 29 H 1.09001 * 109.46964 * 300.00331 * 1 2 3 30 30 H 1.09004 * 109.47040 * 60.00398 * 1 2 3 31 31 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47252 * 239.99501 * 2 1 3 33 33 H 1.09004 * 109.47040 * 119.99602 * 2 1 3 34 34 H 1.08001 * 126.28997 * 0.02562 * 4 3 2 35 35 H 1.09003 * 110.36469 * 85.33137 * 9 8 6 36 36 H 1.08999 * 110.36414 * 323.01191 * 9 8 6 37 37 H 1.08995 * 111.00173 * 204.91341 * 10 9 8 38 38 H 1.09006 * 111.00160 * 81.06465 * 10 9 8 39 39 H 1.00898 * 111.00138 * 31.04051 * 13 11 10 40 40 H 1.09003 * 109.47015 * 299.99738 * 14 13 11 41 41 H 1.08994 * 109.47500 * 59.99443 * 14 13 11 42 42 H 0.97002 * 120.00555 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00191 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.88557 * 59.47953 * 26 8 6 45 45 H 1.08998 * 109.88308 * 298.31460 * 26 8 6 46 46 H 1.07995 * 125.98384 * 180.24319 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8731 1.9112 0.8895 5 6 3.0701 3.2313 0.5373 6 6 3.9315 4.2038 1.2342 7 8 4.6293 3.8424 2.1623 8 7 3.9454 5.4934 0.8430 9 6 4.6791 6.5854 1.5084 10 6 3.9180 7.8746 1.1107 11 6 3.5176 7.5604 -0.3550 12 1 4.3405 7.7802 -1.0351 13 7 2.3123 8.3085 -0.7363 14 6 2.2538 8.5068 -2.1906 15 6 1.0064 9.2755 -2.5431 16 8 0.2416 9.6243 -1.6686 17 7 0.7412 9.5763 -3.8298 18 6 -0.3933 10.2761 -4.1504 19 1 -1.0747 10.5859 -3.3719 20 6 -0.6670 10.5857 -5.4770 21 7 -1.7547 11.2560 -5.7843 22 14 0.5112 10.0491 -6.8236 23 1 0.1203 8.7038 -7.3162 24 1 0.4576 11.0217 -7.9446 25 1 1.8922 9.9954 -6.2804 26 6 3.2305 6.0445 -0.3175 27 6 2.2966 3.4742 -0.6199 28 7 1.6765 2.3693 -0.9301 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.3218 1.3994 1.7281 35 1 5.7074 6.6256 1.1489 36 1 4.6594 6.4516 2.5900 37 1 4.5722 8.7451 1.1590 38 1 3.0357 8.0158 1.7350 39 1 2.2649 9.1906 -0.2488 40 1 3.1303 9.0668 -2.5165 41 1 2.2359 7.5377 -2.6891 42 1 1.3534 9.2983 -4.5290 43 1 -1.9460 11.4719 -6.7104 44 1 2.1596 5.8728 -0.2090 45 1 3.5923 5.5759 -1.2326 46 1 2.2305 4.4105 -1.1540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265422752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:51 Heat of formation + Delta-G solvation = 29.349107 kcal Electronic energy + Delta-G solvation = -28298.074716 eV Core-core repulsion = 24225.186406 eV Total energy + Delta-G solvation = -4072.888310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66168 -39.88998 -38.53660 -37.58169 -34.94349 -34.69853 -33.84064 -31.71289 -31.41975 -30.82102 -29.63065 -28.67873 -26.53556 -24.71515 -24.20257 -23.35468 -21.69230 -21.33708 -20.58540 -19.66075 -19.37143 -18.34728 -17.66426 -16.83944 -16.56343 -15.98453 -15.89119 -15.42170 -15.26778 -14.97388 -14.65019 -14.56674 -14.25992 -13.91377 -13.71053 -13.61387 -13.16613 -13.14181 -13.05053 -12.72219 -12.54712 -12.48323 -12.44540 -12.13326 -11.90783 -11.85336 -11.59418 -11.28988 -11.18758 -11.16286 -10.94534 -10.60877 -10.00000 -9.97898 -9.84620 -9.58887 -9.00887 -8.68959 -8.63780 -8.29210 -8.19246 -6.32383 -3.84021 1.29870 2.00350 2.04175 2.84783 3.01098 3.06140 3.14430 3.31161 3.71144 3.95123 4.05891 4.09349 4.25348 4.39231 4.43807 4.49076 4.67172 4.73078 4.77768 4.83678 4.98909 5.06779 5.10198 5.17606 5.19325 5.25916 5.33972 5.39968 5.48488 5.51934 5.59670 5.63182 5.70175 5.73955 5.75627 5.86628 5.94776 6.10862 6.26492 6.53651 7.00325 7.30720 7.39539 7.46315 7.56347 8.11258 8.12888 8.57826 8.93528 9.40782 9.80370 10.80696 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.002648 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.387540 B =10570.455046 C =12474.425528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.362 5.362 4 C 0.126 3.874 5 C -0.292 4.292 6 C 0.614 3.386 7 O -0.556 6.556 8 N -0.613 5.613 9 C 0.113 3.887 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.065 0.935 13 N -0.658 5.658 14 C 0.046 3.954 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.099 3.901 27 C 0.072 3.928 28 N -0.292 5.292 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.187 0.813 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.358 0.642 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.371 0.629 43 H 0.273 0.727 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 -19.758 10.828 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.005 3.995 3 N -0.141 5.141 4 C -0.026 4.026 5 C -0.307 4.307 6 C 0.404 3.596 7 O -0.436 6.436 8 N -0.346 5.346 9 C -0.010 4.010 10 C -0.176 4.176 11 C -0.037 4.037 12 H 0.083 0.917 13 N -0.292 5.292 14 C -0.087 4.087 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.229 5.229 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.025 4.025 27 C -0.115 4.115 28 N -0.111 5.111 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.204 0.796 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.179 0.821 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 12.197 -20.961 10.923 26.598 hybrid contribution 2.004 0.732 -0.965 2.341 sum 14.200 -20.230 9.958 26.647 Atomic orbital electron populations 1.22068 0.93233 1.03138 1.04046 1.21836 0.96601 0.76851 1.04174 1.48728 1.33942 1.10745 1.20644 1.22931 0.91731 0.93435 0.94470 1.20135 1.11724 0.95087 1.03742 1.16830 0.80664 0.79944 0.82114 1.90757 1.43765 1.78361 1.30688 1.48116 1.49635 1.07087 1.29791 1.22148 0.95322 0.84922 0.98593 1.23035 1.01376 0.97193 0.95966 1.22546 0.91789 0.93207 0.96193 0.91747 1.60008 1.36790 1.26573 1.05788 1.21809 0.96934 1.00609 0.89371 1.19668 0.88430 0.85164 0.83273 1.90577 1.50083 1.56581 1.47360 1.42205 1.22939 1.51495 1.06273 1.19428 0.98910 1.30314 0.94744 0.86268 1.25044 0.96720 0.97112 0.97273 1.69619 1.24643 1.38496 1.19318 0.86673 0.80742 0.79471 0.82497 1.19553 1.20217 1.19512 1.22466 0.98326 0.93678 0.87982 1.24838 0.93606 0.97820 0.95236 1.77239 1.23602 0.97123 1.13181 0.91873 0.90711 0.90447 0.89264 0.88312 0.79646 0.91375 0.90169 0.89588 0.89179 0.82078 0.93433 0.89383 0.79680 0.91594 0.89076 0.91253 0.78315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.09 37.16 0.37 -0.59 16 2 C 0.13 0.70 7.21 -4.04 -0.03 0.67 16 3 N -0.36 -3.45 3.65 -60.80 -0.22 -3.67 16 4 C 0.13 1.24 11.25 -16.56 -0.19 1.05 16 5 C -0.29 -3.45 6.09 -105.07 -0.64 -4.09 16 6 C 0.61 8.09 7.84 -12.52 -0.10 7.99 16 7 O -0.56 -8.76 17.20 5.27 0.09 -8.66 16 8 N -0.61 -6.97 3.33 -171.78 -0.57 -7.54 16 9 C 0.11 1.09 6.89 -2.53 -0.02 1.07 16 10 C -0.14 -1.21 6.47 -24.59 -0.16 -1.36 16 11 C 0.07 0.75 3.28 -65.88 -0.22 0.53 16 12 H 0.06 0.58 7.83 -51.93 -0.41 0.18 16 13 N -0.66 -8.92 5.94 -106.06 -0.63 -9.55 16 14 C 0.05 0.68 6.03 -4.98 -0.03 0.65 16 15 C 0.45 9.70 7.82 -10.99 -0.09 9.61 16 16 O -0.56 -14.62 15.78 5.54 0.09 -14.54 16 17 N -0.59 -13.59 5.09 -10.96 -0.06 -13.65 16 18 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 22 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 26 C 0.10 1.03 4.74 -3.07 -0.01 1.01 16 27 C 0.07 0.84 10.44 -16.98 -0.18 0.67 16 28 N -0.29 -3.55 12.33 30.86 0.38 -3.17 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.27 8.06 -51.93 -0.42 -0.15 16 34 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.36 5.06 8.13 -39.29 -0.32 4.74 16 40 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.09 1.07 6.63 -51.93 -0.34 0.72 16 45 H 0.07 0.63 7.10 -51.93 -0.37 0.26 16 46 H 0.20 2.06 4.52 -52.49 -0.24 1.82 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -36.36 382.63 -7.15 -43.51 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.53 Total: 12.32 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -1.53 Total: 9.60 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.32 Total: -62.32 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.18 Total: -23.20 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.36 -7.15 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265422752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.860 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds