Wall clock time and date at job start Tue Mar 31 2020 18:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47107 * 2 1 4 4 C 1.34262 * 125.75584 * 125.27403 * 3 2 1 5 5 C 1.38042 * 107.41179 * 180.18316 * 4 3 2 6 6 C 1.47428 * 126.40956 * 179.87432 * 5 4 3 7 7 O 1.21608 * 120.00243 * 5.42009 * 6 5 4 8 8 N 1.34775 * 119.99994 * 185.42743 * 6 5 4 9 9 C 1.47428 * 125.65114 * 175.26759 * 8 6 5 10 10 C 1.54908 * 104.83369 * 204.17251 * 9 8 6 11 11 C 1.55152 * 101.58173 * 322.99369 * 10 9 8 12 12 H 1.09003 * 110.71781 * 277.13743 * 11 10 9 13 13 N 1.46900 * 110.71888 * 153.86735 * 11 10 9 14 14 C 1.46901 * 111.00127 * 155.00074 * 13 11 10 15 15 C 1.50700 * 109.47270 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99925 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99932 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00045 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99954 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00247 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00149 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99788 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47099 * 90.00268 * 22 20 18 24 24 H 1.48509 * 109.46871 * 209.99964 * 22 20 18 25 25 H 1.48491 * 109.47130 * 330.00170 * 22 20 18 26 26 C 1.47021 * 125.64757 * 355.32121 * 8 6 5 27 27 C 1.41292 * 107.17451 * 359.60073 * 5 4 3 28 28 N 1.30449 * 108.02157 * 0.24533 * 27 5 4 29 29 H 1.09001 * 109.46964 * 300.00331 * 1 2 3 30 30 H 1.09004 * 109.47040 * 60.00398 * 1 2 3 31 31 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47252 * 239.99501 * 2 1 3 33 33 H 1.09004 * 109.47040 * 119.99602 * 2 1 3 34 34 H 1.08001 * 126.28997 * 0.02562 * 4 3 2 35 35 H 1.09003 * 110.36469 * 85.33137 * 9 8 6 36 36 H 1.08999 * 110.36414 * 323.01191 * 9 8 6 37 37 H 1.08995 * 111.00173 * 204.91341 * 10 9 8 38 38 H 1.09006 * 111.00160 * 81.06465 * 10 9 8 39 39 H 1.00898 * 111.00138 * 31.04051 * 13 11 10 40 40 H 1.09003 * 109.47015 * 299.99738 * 14 13 11 41 41 H 1.08994 * 109.47500 * 59.99443 * 14 13 11 42 42 H 0.97002 * 120.00555 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00191 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.88557 * 59.47953 * 26 8 6 45 45 H 1.08998 * 109.88308 * 298.31460 * 26 8 6 46 46 H 1.07995 * 125.98384 * 180.24319 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8731 1.9112 0.8895 5 6 3.0701 3.2313 0.5373 6 6 3.9315 4.2038 1.2342 7 8 4.6293 3.8424 2.1623 8 7 3.9454 5.4934 0.8430 9 6 4.6791 6.5854 1.5084 10 6 3.9180 7.8746 1.1107 11 6 3.5176 7.5604 -0.3550 12 1 4.3405 7.7802 -1.0351 13 7 2.3123 8.3085 -0.7363 14 6 2.2538 8.5068 -2.1906 15 6 1.0064 9.2755 -2.5431 16 8 0.2416 9.6243 -1.6686 17 7 0.7412 9.5763 -3.8298 18 6 -0.3933 10.2761 -4.1504 19 1 -1.0747 10.5859 -3.3719 20 6 -0.6670 10.5857 -5.4770 21 7 -1.7547 11.2560 -5.7843 22 14 0.5112 10.0491 -6.8236 23 1 0.1203 8.7038 -7.3162 24 1 0.4576 11.0217 -7.9446 25 1 1.8922 9.9954 -6.2804 26 6 3.2305 6.0445 -0.3175 27 6 2.2966 3.4742 -0.6199 28 7 1.6765 2.3693 -0.9301 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.3218 1.3994 1.7281 35 1 5.7074 6.6256 1.1489 36 1 4.6594 6.4516 2.5900 37 1 4.5722 8.7451 1.1590 38 1 3.0357 8.0158 1.7350 39 1 2.2649 9.1906 -0.2488 40 1 3.1303 9.0668 -2.5165 41 1 2.2359 7.5377 -2.6891 42 1 1.3534 9.2983 -4.5290 43 1 -1.9460 11.4719 -6.7104 44 1 2.1596 5.8728 -0.2090 45 1 3.5923 5.5759 -1.2326 46 1 2.2305 4.4105 -1.1540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265422752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:50 Heat of formation + Delta-G solvation = -0.016635 kcal Electronic energy + Delta-G solvation = -28299.348110 eV Core-core repulsion = 24225.186406 eV Total energy + Delta-G solvation = -4074.161704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45071 -40.79558 -40.17742 -38.63951 -36.17287 -35.59271 -35.37297 -33.71380 -32.30774 -31.56832 -30.48259 -29.54771 -27.96023 -25.89454 -25.12936 -24.38738 -22.50483 -22.08340 -21.40931 -21.20305 -20.50242 -20.17981 -18.43461 -17.82447 -17.60035 -17.17695 -16.87702 -16.64890 -16.41108 -16.20681 -15.77730 -15.52209 -15.27978 -14.88774 -14.84437 -14.67368 -14.45898 -14.30759 -14.09300 -13.85573 -13.69671 -13.45133 -13.27610 -13.08934 -13.00343 -12.82164 -12.51033 -12.46690 -12.38031 -12.05534 -11.95483 -11.91195 -11.73108 -11.48022 -10.96813 -10.61575 -10.39078 -10.21565 -9.87350 -9.51702 -9.35058 -8.38572 -5.99282 0.51388 1.13599 1.32423 1.38638 1.40379 1.46925 2.00148 2.00836 2.25755 2.39744 2.76772 3.18425 3.29119 3.43353 3.58785 3.68016 3.78627 4.00613 4.02545 4.06507 4.18253 4.22976 4.33036 4.33945 4.39545 4.41411 4.51914 4.59669 4.63933 4.72867 4.77811 4.82630 4.86749 4.89278 4.96452 5.16239 5.20171 5.32047 5.45270 5.55981 5.88866 5.94342 6.08649 6.38820 6.48242 6.53601 6.62990 6.91917 7.17151 7.43953 8.01118 8.79210 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.002648 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.387540 B =10570.455046 C =12474.425528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.357 5.357 4 C 0.135 3.865 5 C -0.317 4.317 6 C 0.609 3.391 7 O -0.591 6.591 8 N -0.613 5.613 9 C 0.110 3.890 10 C -0.128 4.128 11 C 0.079 3.921 12 H 0.091 0.909 13 N -0.676 5.676 14 C 0.060 3.940 15 C 0.449 3.551 16 O -0.615 6.615 17 N -0.592 5.592 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.227 1.227 26 C 0.100 3.900 27 C 0.069 3.931 28 N -0.323 5.323 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.212 0.788 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.353 0.647 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.173 -21.850 9.813 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 N -0.135 5.135 4 C -0.019 4.019 5 C -0.332 4.332 6 C 0.401 3.599 7 O -0.473 6.473 8 N -0.345 5.345 9 C -0.012 4.012 10 C -0.166 4.166 11 C -0.031 4.031 12 H 0.109 0.891 13 N -0.309 5.309 14 C -0.072 4.072 15 C 0.237 3.763 16 O -0.499 6.499 17 N -0.234 5.234 18 C -0.456 4.456 19 H 0.072 0.928 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.150 1.150 26 C -0.024 4.024 27 C -0.117 4.117 28 N -0.143 5.143 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.152 0.848 34 H 0.229 0.771 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.174 0.826 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 15.595 -23.064 9.906 29.551 hybrid contribution 0.835 1.346 -0.489 1.658 sum 16.430 -21.718 9.417 28.814 Atomic orbital electron populations 1.22036 0.93568 1.04266 1.02215 1.22261 0.96338 0.75171 1.06493 1.49057 1.33273 1.11508 1.19697 1.23361 0.90912 0.92994 0.94589 1.20220 1.12648 0.95922 1.04421 1.17050 0.80463 0.80614 0.81790 1.90725 1.45319 1.79054 1.32215 1.48189 1.49380 1.06971 1.29998 1.22278 0.96092 0.84658 0.98176 1.22990 1.01139 0.97631 0.94833 1.22591 0.91017 0.92171 0.97331 0.89091 1.59946 1.39297 1.26674 1.05028 1.21752 0.93795 1.01135 0.90524 1.21047 0.89679 0.83548 0.82042 1.90559 1.52430 1.58147 1.48802 1.42036 1.22051 1.51681 1.07611 1.18998 1.00300 1.32342 0.93967 0.92757 1.26128 0.98883 0.96429 1.00078 1.69809 1.27399 1.40176 1.20386 0.85370 0.79586 0.79019 0.77576 1.18313 1.20305 1.15015 1.22497 0.97410 0.94171 0.88298 1.24957 0.93425 0.98072 0.95291 1.77173 1.24539 0.97943 1.14685 0.92978 0.93168 0.87849 0.88103 0.84845 0.77103 0.89813 0.91033 0.87148 0.90629 0.82616 0.89769 0.86540 0.77418 0.91238 0.90732 0.89483 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.09 71.98 0.73 -0.96 16 2 C 0.12 1.04 7.21 86.38 0.62 1.66 16 3 N -0.36 -6.30 3.65 -346.29 -1.26 -7.56 16 4 C 0.13 2.44 11.25 84.27 0.95 3.39 16 5 C -0.32 -7.26 6.09 -20.15 -0.12 -7.39 16 6 C 0.61 15.66 7.84 86.66 0.68 16.34 16 7 O -0.59 -18.37 17.20 -4.06 -0.07 -18.44 16 8 N -0.61 -13.12 3.33 -815.65 -2.71 -15.83 16 9 C 0.11 1.93 6.89 86.85 0.60 2.53 16 10 C -0.13 -1.95 6.47 31.98 0.21 -1.74 16 11 C 0.08 1.35 3.28 46.10 0.15 1.50 16 12 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 13 N -0.68 -16.86 5.94 -489.46 -2.91 -19.77 16 14 C 0.06 1.58 6.03 85.56 0.52 2.10 16 15 C 0.45 19.11 7.82 87.66 0.69 19.80 16 16 O -0.61 -32.92 15.78 -3.07 -0.05 -32.96 16 17 N -0.59 -26.84 5.09 -306.99 -1.56 -28.40 16 18 C -0.33 -18.85 10.16 84.04 0.85 -17.99 16 19 H 0.05 3.76 7.39 -2.91 -0.02 3.73 16 20 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 21 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 22 Si 0.96 38.04 27.74 68.60 1.90 39.94 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 24 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 26 C 0.10 1.86 4.74 86.73 0.41 2.27 16 27 C 0.07 1.57 10.44 85.65 0.89 2.47 16 28 N -0.32 -7.67 12.33 -56.28 -0.69 -8.37 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.13 0.28 8.06 -2.39 -0.02 0.26 16 34 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.35 9.49 8.13 -89.70 -0.73 8.76 16 40 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 41 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.39 14.43 5.76 -92.71 -0.53 13.89 16 43 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.07 1.67 6.63 -2.39 -0.02 1.66 16 45 H 0.09 1.34 7.10 -2.39 -0.02 1.32 16 46 H 0.21 4.08 4.52 -2.91 -0.01 4.06 16 Total: -1.00 -86.46 382.63 0.29 -86.17 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.29 Total: 37.73 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 7.64 Total: 23.52 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -8.84 Total: -135.95 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.12 Total: -51.40 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -86.46 0.29 -86.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265422752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.151 kcal (2) G-P(sol) polarization free energy of solvation -86.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds