Wall clock time and date at job start Tue Mar 31 2020 19:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47060 * 2 1 4 4 C 1.35399 * 126.43604 * 265.00087 * 3 2 1 5 5 C 1.35567 * 107.16172 * 179.97438 * 4 3 2 6 6 N 1.33106 * 108.34419 * 359.77691 * 5 4 3 7 7 C 1.31611 * 109.09918 * 0.36879 * 6 5 4 8 8 C 1.47406 * 125.86641 * 179.89359 * 7 6 5 9 9 O 1.21605 * 119.99893 * 179.69276 * 8 7 6 10 10 N 1.34776 * 119.99671 * 359.69297 * 8 7 6 11 11 C 1.46505 * 119.99597 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85296 * 23.80222 * 11 10 8 13 13 C 1.53781 * 113.61334 * 154.99978 * 11 10 8 14 14 C 1.53786 * 87.17350 * 89.07333 * 13 11 10 15 15 H 1.09000 * 113.60973 * 270.92699 * 14 13 11 16 16 N 1.46899 * 113.61541 * 140.02506 * 14 13 11 17 17 C 1.46895 * 110.99736 * 154.99883 * 16 14 13 18 18 C 1.50707 * 109.46819 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99955 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99775 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99694 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00186 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99633 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00071 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99776 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47069 * 60.00220 * 25 23 21 27 27 H 1.48494 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47321 * 300.00869 * 25 23 21 29 29 C 1.53781 * 113.61146 * 252.49455 * 11 10 8 30 30 H 1.08995 * 109.47025 * 60.00264 * 1 2 3 31 31 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47065 * 300.00046 * 1 2 3 33 33 H 1.08997 * 109.47065 * 239.99954 * 2 1 3 34 34 H 1.08995 * 109.47025 * 119.99736 * 2 1 3 35 35 H 1.08000 * 126.42333 * 359.97438 * 4 3 2 36 36 H 1.07999 * 125.82657 * 179.97438 * 5 4 3 37 37 H 0.96995 * 120.00232 * 359.97438 * 10 8 7 38 38 H 1.09002 * 113.61445 * 203.66333 * 13 11 10 39 39 H 1.09002 * 113.61408 * 334.48063 * 13 11 10 40 40 H 1.00896 * 110.99714 * 278.94970 * 16 14 13 41 41 H 1.09000 * 109.47573 * 299.99566 * 17 16 14 42 42 H 1.08994 * 109.47310 * 60.00041 * 17 16 14 43 43 H 0.97002 * 120.00192 * 0.02562 * 20 18 17 44 44 H 0.97003 * 119.99839 * 179.97438 * 24 23 21 45 45 H 1.09005 * 113.61471 * 25.43638 * 29 11 10 46 46 H 1.08996 * 113.61178 * 156.24980 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3759 2.1077 -1.0852 5 6 2.7651 3.3274 -0.6394 6 7 2.6436 3.3475 0.6859 7 6 2.1980 2.1787 1.0952 8 6 1.9324 1.7974 2.4941 9 8 1.5147 0.6848 2.7522 10 7 2.1524 2.6818 3.4870 11 6 1.8889 2.3026 4.8774 12 1 1.9248 1.2248 5.0363 13 6 2.7107 3.1039 5.9008 14 6 1.5633 4.1278 5.9066 15 1 1.6706 4.9079 5.1530 16 7 1.2562 4.6600 7.2409 17 6 0.6293 5.9852 7.1476 18 6 0.3290 6.4974 8.5327 19 8 0.6100 5.8249 9.5022 20 7 -0.2509 7.7032 8.6942 21 6 -0.5246 8.1690 9.9543 22 1 -0.2751 7.5699 10.8174 23 6 -1.1220 9.4125 10.1208 24 7 -1.4250 10.1418 9.0704 25 14 -1.4942 10.0475 11.8377 26 1 -0.2314 10.1496 12.6123 27 1 -2.1274 11.3874 11.7434 28 1 -2.4203 9.1099 12.5223 29 6 0.6398 2.9736 5.4727 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3550 1.7775 -2.1132 36 1 3.1114 4.1445 -1.2550 37 1 2.4859 3.5690 3.2812 38 1 2.8425 2.5904 6.8532 39 1 3.6447 3.4970 5.4991 40 1 0.6738 4.0202 7.7600 41 1 1.3082 6.6737 6.6445 42 1 -0.2979 5.9093 6.5797 43 1 -0.4753 8.2413 7.9188 44 1 -1.8424 11.0097 9.1867 45 1 -0.0988 3.2627 4.7250 46 1 0.2046 2.4237 6.3071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265475437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:47 Heat of formation + Delta-G solvation = 15.571044 kcal Electronic energy + Delta-G solvation = -27729.706096 eV Core-core repulsion = 23656.220324 eV Total energy + Delta-G solvation = -4073.485772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67946 -40.29314 -38.65414 -37.91970 -35.60192 -34.51370 -33.79794 -32.50129 -31.17401 -30.77019 -29.92737 -26.88741 -25.77323 -24.98772 -24.31936 -23.58699 -22.56855 -21.79965 -20.41941 -19.71953 -19.08225 -18.19013 -17.84433 -16.86263 -16.37091 -16.05649 -16.04649 -15.39339 -15.10180 -14.91820 -14.68958 -14.53688 -14.42982 -14.22078 -14.00221 -13.91399 -13.69079 -13.14806 -13.01778 -12.78170 -12.57326 -12.52612 -12.14920 -11.88134 -11.76640 -11.56634 -11.40095 -11.02564 -10.81904 -10.66052 -10.48972 -10.44178 -10.41850 -10.22231 -10.18744 -9.47902 -9.38679 -8.92097 -8.42253 -7.99566 -7.92697 -6.39463 -3.80288 0.99085 2.01063 2.23398 2.91010 3.08202 3.21901 3.27369 3.31930 3.93488 3.96318 4.12405 4.17842 4.31355 4.34549 4.43529 4.50453 4.57030 4.77322 4.82710 4.87499 4.98749 5.00688 5.16940 5.20013 5.26078 5.29322 5.44459 5.61155 5.66748 5.69904 5.77932 5.79445 5.83342 5.89150 5.99249 6.04742 6.18857 6.26997 6.37306 6.49448 7.07071 7.28020 7.47572 7.57134 7.69238 7.81878 8.08509 8.63654 9.19976 9.56754 10.08297 10.78197 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.001769 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.707926 B =15826.267345 C =16332.781555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.413 5.413 4 C -0.029 4.029 5 C -0.027 4.027 6 N -0.444 5.444 7 C 0.137 3.863 8 C 0.611 3.389 9 O -0.540 6.540 10 N -0.685 5.685 11 C 0.119 3.881 12 H 0.107 0.893 13 C -0.131 4.131 14 C 0.067 3.933 15 H 0.096 0.904 16 N -0.656 5.656 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.180 4.180 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.183 0.817 36 H 0.179 0.821 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.352 0.648 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.070 0.930 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -18.146 -24.131 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.093 5.093 4 C -0.168 4.168 5 C -0.180 4.180 6 N -0.166 5.166 7 C -0.122 4.122 8 C 0.395 3.605 9 O -0.416 6.416 10 N -0.336 5.336 11 C 0.014 3.986 12 H 0.125 0.875 13 C -0.170 4.170 14 C -0.044 4.044 15 H 0.114 0.886 16 N -0.287 5.287 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.220 4.220 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.200 0.800 36 H 0.196 0.804 37 H 0.250 0.750 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.173 0.827 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.880 -18.468 -22.566 29.961 hybrid contribution -1.304 0.407 -0.910 1.641 sum 5.577 -18.061 -23.477 30.141 Atomic orbital electron populations 1.22070 0.93404 1.03539 1.03106 1.22146 0.96451 0.78672 1.05381 1.45288 1.45006 1.12949 1.06103 1.22955 1.06595 0.94082 0.93125 1.22458 1.07075 0.97512 0.90965 1.70207 1.15135 1.18446 1.12802 1.22611 1.10719 0.88581 0.90254 1.16421 0.77592 0.84473 0.82006 1.90800 1.46534 1.20726 1.83533 1.45347 1.65709 1.17083 1.05413 1.21845 0.97097 1.00362 0.79316 0.87550 1.23472 0.97899 0.96834 0.98842 1.23165 0.95428 0.94540 0.91255 0.88631 1.60010 1.51042 1.03830 1.13803 1.21720 0.97902 0.91852 0.96839 1.19840 0.83981 0.83598 0.90014 1.90520 1.57073 1.58144 1.41097 1.41864 1.53212 1.15779 1.09184 1.19658 1.36832 1.01210 0.85237 0.87975 1.25268 0.97203 0.96203 0.99309 1.69606 1.42530 1.12722 1.29477 0.85912 0.78813 0.77690 0.81758 1.19879 1.20998 1.19944 1.24253 0.97338 0.98969 1.01478 0.92233 0.90221 0.91273 0.88932 0.87175 0.80008 0.80417 0.75001 0.87844 0.90633 0.82723 0.89584 0.93828 0.77451 0.91836 0.91169 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.23 37.16 0.38 -0.62 16 2 C 0.09 0.59 6.18 -4.04 -0.02 0.57 16 3 N -0.41 -3.47 2.76 -114.59 -0.32 -3.78 16 4 C -0.03 -0.19 11.53 -16.93 -0.20 -0.39 16 5 C -0.03 -0.22 11.85 -17.95 -0.21 -0.43 16 6 N -0.44 -4.83 10.89 -11.26 -0.12 -4.95 16 7 C 0.14 1.48 7.79 -154.52 -1.20 0.28 16 8 C 0.61 7.00 7.81 -12.53 -0.10 6.90 16 9 O -0.54 -6.97 14.10 5.27 0.07 -6.90 16 10 N -0.68 -6.97 5.26 -54.09 -0.28 -7.25 16 11 C 0.12 1.21 4.32 -67.11 -0.29 0.92 16 12 H 0.11 1.13 7.46 -51.93 -0.39 0.74 16 13 C -0.13 -1.36 7.62 -25.92 -0.20 -1.55 16 14 C 0.07 0.80 4.07 -66.76 -0.27 0.53 16 15 H 0.10 1.09 7.87 -51.93 -0.41 0.68 16 16 N -0.66 -10.41 6.24 -106.98 -0.67 -11.08 16 17 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 18 C 0.44 10.49 7.82 -10.98 -0.09 10.40 16 19 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 20 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C -0.18 -1.94 7.50 -25.78 -0.19 -2.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.60 7.85 -51.93 -0.41 0.20 16 33 H 0.09 0.32 8.13 -51.93 -0.42 -0.11 16 34 H 0.11 0.84 6.64 -51.93 -0.34 0.50 16 35 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.41 3.92 8.38 -40.82 -0.34 3.58 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.35 5.77 7.91 -39.29 -0.31 5.45 16 41 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 1.02 7.84 -51.93 -0.41 0.61 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -34.16 390.70 -9.03 -43.19 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.67 Total: 15.86 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.66 Total: 7.22 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.72 Total: -65.58 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.16 -9.03 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265475437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.757 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds