Wall clock time and date at job start Tue Mar 31 2020 19:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47060 * 2 1 4 4 C 1.35399 * 126.43604 * 265.00087 * 3 2 1 5 5 C 1.35567 * 107.16172 * 179.97438 * 4 3 2 6 6 N 1.33106 * 108.34419 * 359.77691 * 5 4 3 7 7 C 1.31611 * 109.09918 * 0.36879 * 6 5 4 8 8 C 1.47406 * 125.86641 * 179.89359 * 7 6 5 9 9 O 1.21605 * 119.99893 * 179.69276 * 8 7 6 10 10 N 1.34776 * 119.99671 * 359.69297 * 8 7 6 11 11 C 1.46505 * 119.99597 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85296 * 23.80222 * 11 10 8 13 13 C 1.53781 * 113.61334 * 154.99978 * 11 10 8 14 14 C 1.53786 * 87.17350 * 89.07333 * 13 11 10 15 15 H 1.09000 * 113.60973 * 270.92699 * 14 13 11 16 16 N 1.46899 * 113.61541 * 140.02506 * 14 13 11 17 17 C 1.46895 * 110.99736 * 154.99883 * 16 14 13 18 18 C 1.50707 * 109.46819 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99955 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99775 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99694 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00186 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99633 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00071 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99776 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47069 * 60.00220 * 25 23 21 27 27 H 1.48494 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47321 * 300.00869 * 25 23 21 29 29 C 1.53781 * 113.61146 * 252.49455 * 11 10 8 30 30 H 1.08995 * 109.47025 * 60.00264 * 1 2 3 31 31 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47065 * 300.00046 * 1 2 3 33 33 H 1.08997 * 109.47065 * 239.99954 * 2 1 3 34 34 H 1.08995 * 109.47025 * 119.99736 * 2 1 3 35 35 H 1.08000 * 126.42333 * 359.97438 * 4 3 2 36 36 H 1.07999 * 125.82657 * 179.97438 * 5 4 3 37 37 H 0.96995 * 120.00232 * 359.97438 * 10 8 7 38 38 H 1.09002 * 113.61445 * 203.66333 * 13 11 10 39 39 H 1.09002 * 113.61408 * 334.48063 * 13 11 10 40 40 H 1.00896 * 110.99714 * 278.94970 * 16 14 13 41 41 H 1.09000 * 109.47573 * 299.99566 * 17 16 14 42 42 H 1.08994 * 109.47310 * 60.00041 * 17 16 14 43 43 H 0.97002 * 120.00192 * 0.02562 * 20 18 17 44 44 H 0.97003 * 119.99839 * 179.97438 * 24 23 21 45 45 H 1.09005 * 113.61471 * 25.43638 * 29 11 10 46 46 H 1.08996 * 113.61178 * 156.24980 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3759 2.1077 -1.0852 5 6 2.7651 3.3274 -0.6394 6 7 2.6436 3.3475 0.6859 7 6 2.1980 2.1787 1.0952 8 6 1.9324 1.7974 2.4941 9 8 1.5147 0.6848 2.7522 10 7 2.1524 2.6818 3.4870 11 6 1.8889 2.3026 4.8774 12 1 1.9248 1.2248 5.0363 13 6 2.7107 3.1039 5.9008 14 6 1.5633 4.1278 5.9066 15 1 1.6706 4.9079 5.1530 16 7 1.2562 4.6600 7.2409 17 6 0.6293 5.9852 7.1476 18 6 0.3290 6.4974 8.5327 19 8 0.6100 5.8249 9.5022 20 7 -0.2509 7.7032 8.6942 21 6 -0.5246 8.1690 9.9543 22 1 -0.2751 7.5699 10.8174 23 6 -1.1220 9.4125 10.1208 24 7 -1.4250 10.1418 9.0704 25 14 -1.4942 10.0475 11.8377 26 1 -0.2314 10.1496 12.6123 27 1 -2.1274 11.3874 11.7434 28 1 -2.4203 9.1099 12.5223 29 6 0.6398 2.9736 5.4727 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3550 1.7775 -2.1132 36 1 3.1114 4.1445 -1.2550 37 1 2.4859 3.5690 3.2812 38 1 2.8425 2.5904 6.8532 39 1 3.6447 3.4970 5.4991 40 1 0.6738 4.0202 7.7600 41 1 1.3082 6.6737 6.6445 42 1 -0.2979 5.9093 6.5797 43 1 -0.4753 8.2413 7.9188 44 1 -1.8424 11.0097 9.1867 45 1 -0.0988 3.2627 4.7250 46 1 0.2046 2.4237 6.3071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265475437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:46 Heat of formation + Delta-G solvation = -10.113704 kcal Electronic energy + Delta-G solvation = -27730.819870 eV Core-core repulsion = 23656.220324 eV Total energy + Delta-G solvation = -4074.599546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.29880 -41.19386 -40.12817 -39.26553 -36.28918 -36.02674 -35.32064 -33.61050 -33.18689 -31.35868 -30.55977 -28.44879 -26.65780 -26.30989 -25.35357 -24.46124 -23.50570 -22.40291 -21.26939 -21.07392 -20.42690 -19.87469 -18.84306 -17.89414 -17.46165 -17.07000 -16.89615 -16.73712 -16.36447 -16.12927 -15.75123 -15.68491 -15.54386 -15.35040 -15.07268 -14.73603 -14.48659 -14.35282 -14.27837 -13.64284 -13.53467 -13.49092 -13.44690 -13.12673 -13.02144 -12.83891 -12.62538 -12.42851 -12.33709 -12.12052 -11.79527 -11.50236 -11.46873 -11.34031 -11.18693 -10.85575 -10.33187 -10.23375 -10.01525 -9.52901 -9.24129 -8.46187 -5.95145 0.29722 1.39247 1.40256 1.41947 1.53122 1.60324 2.05536 2.21294 2.29636 2.33635 2.94667 3.20862 3.25906 3.42823 3.58308 3.69560 3.73463 3.83771 3.95174 4.03537 4.06321 4.32495 4.33146 4.40161 4.47168 4.50344 4.54544 4.59394 4.70815 4.77847 4.80165 4.82369 4.91683 5.01861 5.10380 5.13724 5.23584 5.40837 5.45253 5.66078 5.91589 5.93134 6.14932 6.28457 6.42287 6.60364 6.80270 7.02882 7.12606 7.56439 8.11634 8.70935 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.001769 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.707926 B =15826.267345 C =16332.781555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.413 5.413 4 C -0.007 4.007 5 C -0.049 4.049 6 N -0.466 5.466 7 C 0.100 3.900 8 C 0.607 3.393 9 O -0.562 6.562 10 N -0.680 5.680 11 C 0.128 3.872 12 H 0.103 0.897 13 C -0.122 4.122 14 C 0.065 3.935 15 H 0.105 0.895 16 N -0.668 5.668 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 C -0.173 4.173 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.226 0.774 36 H 0.201 0.799 37 H 0.417 0.583 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.347 0.653 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -18.376 -26.336 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.094 5.094 4 C -0.147 4.147 5 C -0.202 4.202 6 N -0.188 5.188 7 C -0.157 4.157 8 C 0.393 3.607 9 O -0.441 6.441 10 N -0.331 5.331 11 C 0.022 3.978 12 H 0.121 0.879 13 C -0.161 4.161 14 C -0.045 4.045 15 H 0.123 0.877 16 N -0.299 5.299 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.214 4.214 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.242 0.758 36 H 0.218 0.782 37 H 0.254 0.746 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.167 0.833 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.124 -18.695 -24.793 31.858 hybrid contribution -1.349 0.436 -0.347 1.459 sum 5.775 -18.259 -25.140 31.603 Atomic orbital electron populations 1.22023 0.93411 1.04232 1.01866 1.22299 0.96387 0.77847 1.06293 1.45521 1.44398 1.13516 1.05969 1.23675 1.03617 0.93094 0.94267 1.23015 1.07695 0.99139 0.90336 1.70140 1.15422 1.18795 1.14458 1.22442 1.13282 0.89524 0.90441 1.16630 0.77173 0.84241 0.82701 1.90776 1.47705 1.21573 1.84022 1.45306 1.65458 1.17110 1.05209 1.21707 0.96618 1.00056 0.79381 0.87940 1.23395 0.97779 0.96067 0.98828 1.23293 0.96499 0.95127 0.89560 0.87655 1.60043 1.50717 1.03057 1.16087 1.21586 0.99484 0.93023 0.92733 1.20912 0.82035 0.82507 0.92112 1.90487 1.58212 1.58990 1.43300 1.41941 1.53904 1.16624 1.08580 1.19645 1.38917 1.02120 0.85797 0.90277 1.26065 0.96336 0.95790 1.03193 1.69669 1.42354 1.13008 1.31075 0.84975 0.78601 0.77526 0.77148 1.19708 1.19467 1.19684 1.24191 0.97327 0.98472 1.01384 0.91282 0.88616 0.94524 0.85252 0.88997 0.75759 0.78241 0.74587 0.87965 0.89717 0.83291 0.87768 0.91782 0.76981 0.91286 0.91535 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.23 71.98 0.74 -1.02 16 2 C 0.09 1.01 6.18 86.38 0.53 1.54 16 3 N -0.41 -6.31 2.76 -516.45 -1.42 -7.74 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.89 16 5 C -0.05 -0.70 11.85 83.88 0.99 0.29 16 6 N -0.47 -9.80 10.89 -189.53 -2.06 -11.86 16 7 C 0.10 2.14 7.79 136.28 1.06 3.20 16 8 C 0.61 14.12 7.81 86.66 0.68 14.80 16 9 O -0.56 -14.94 14.10 -4.05 -0.06 -15.00 16 10 N -0.68 -13.77 5.26 -443.31 -2.33 -16.10 16 11 C 0.13 2.54 4.32 45.52 0.20 2.74 16 12 H 0.10 2.17 7.46 -2.39 -0.02 2.16 16 13 C -0.12 -2.41 7.62 31.12 0.24 -2.17 16 14 C 0.07 1.49 4.07 45.53 0.19 1.68 16 15 H 0.11 2.22 7.87 -2.39 -0.02 2.20 16 16 N -0.67 -20.81 6.24 -492.38 -3.07 -23.89 16 17 C 0.06 2.21 6.01 85.56 0.51 2.73 16 18 C 0.44 21.06 7.82 87.66 0.69 21.75 16 19 O -0.62 -34.92 15.78 -3.07 -0.05 -34.97 16 20 N -0.57 -29.85 5.29 -306.98 -1.62 -31.47 16 21 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 22 H 0.08 4.83 7.16 -2.92 -0.02 4.81 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 25 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 C -0.17 -3.65 7.50 31.21 0.23 -3.41 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.65 7.85 -2.39 -0.02 0.63 16 33 H 0.13 0.44 8.13 -2.39 -0.02 0.42 16 34 H 0.09 1.38 6.64 -2.39 -0.02 1.36 16 35 H 0.23 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.42 7.79 8.38 -92.71 -0.78 7.01 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.35 11.36 7.91 -89.70 -0.71 10.65 16 41 H 0.10 3.26 8.13 -2.39 -0.02 3.24 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 44 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 45 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.10 2.04 7.84 -2.39 -0.02 2.02 16 Total: -1.00 -75.54 390.70 -1.20 -76.74 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -1.18 Total: 44.54 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 8.30 Total: 24.25 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -10.23 Total: -140.94 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.11 Total: -49.97 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -75.54 -1.20 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265475437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.625 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds