Wall clock time and date at job start Tue Mar 31 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46699 * 2 1 4 4 C 1.52995 * 109.47203 * 119.99298 * 2 1 3 5 5 N 1.46500 * 109.47322 * 175.00236 * 4 2 1 6 6 C 1.34776 * 120.00304 * 180.02562 * 5 4 2 7 7 O 1.21603 * 119.99880 * 359.97438 * 6 5 4 8 8 C 1.47424 * 120.00309 * 180.02562 * 6 5 4 9 9 C 1.41710 * 126.49956 * 359.81460 * 8 6 5 10 10 N 1.30284 * 108.00873 * 179.97438 * 9 8 6 11 11 N 1.40515 * 109.02032 * 359.97438 * 10 9 8 12 12 C 1.34220 * 108.28096 * 0.22920 * 11 10 9 13 13 C 1.51387 * 110.37017 * 179.67565 * 12 11 10 14 14 C 1.54564 * 104.14530 * 343.53950 * 13 12 11 15 15 C 1.47252 * 140.81325 * 180.25496 * 11 10 9 16 16 N 1.46896 * 109.47458 * 239.99777 * 2 1 3 17 17 C 1.46904 * 111.00024 * 84.99765 * 16 2 1 18 18 C 1.50697 * 109.47014 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00143 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00136 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00487 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99232 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00030 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00407 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47027 * 89.99751 * 25 23 21 27 27 H 1.48495 * 109.47389 * 209.99816 * 25 23 21 28 28 H 1.48503 * 109.47082 * 330.00092 * 25 23 21 29 29 H 1.08998 * 109.47255 * 300.00656 * 1 2 3 30 30 H 1.09004 * 109.46953 * 60.00066 * 1 2 3 31 31 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46878 * 55.00262 * 4 2 1 33 33 H 1.08997 * 109.47520 * 295.00543 * 4 2 1 34 34 H 0.96998 * 120.00066 * 359.97438 * 5 4 2 35 35 H 1.07998 * 126.00174 * 0.02695 * 9 8 6 36 36 H 1.08997 * 110.49619 * 224.87001 * 13 12 11 37 37 H 1.09002 * 110.49593 * 102.20197 * 13 12 11 38 38 H 1.09003 * 110.98784 * 266.93735 * 14 13 12 39 39 H 1.08999 * 111.02967 * 143.14291 * 14 13 12 40 40 H 1.09002 * 110.23109 * 78.05517 * 15 11 10 41 41 H 1.09000 * 110.22779 * 316.18379 * 15 11 10 42 42 H 1.00906 * 110.99496 * 321.04757 * 16 2 1 43 43 H 1.08999 * 109.47009 * 300.00286 * 17 16 2 44 44 H 1.09001 * 109.47134 * 59.99873 * 17 16 2 45 45 H 0.97005 * 120.00130 * 359.97438 * 20 18 17 46 46 H 0.96997 * 119.99688 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1730 -1.4288 2.1908 7 8 3.5683 -1.8850 3.1422 8 6 5.6423 -1.5341 2.1321 9 6 6.4809 -1.0563 1.0945 10 7 7.7129 -1.3392 1.4097 11 7 7.7279 -2.0028 2.6482 12 6 6.4618 -2.1210 3.0779 13 6 6.4223 -2.8391 4.4100 14 6 7.8110 -3.5087 4.5195 15 6 8.6676 -2.6005 3.6116 16 7 2.0197 -0.6925 -1.1993 17 6 2.0825 0.2225 -2.3469 18 6 2.5874 -0.5219 -3.5559 19 8 2.8670 -1.6990 -3.4703 20 7 2.7274 0.1200 -4.7327 21 6 3.1863 -0.5574 -5.8328 22 1 3.4360 -1.6053 -5.7562 23 6 3.3310 0.1046 -7.0458 24 7 3.0276 1.3799 -7.1388 25 14 3.9569 -0.8181 -8.5446 26 1 2.8077 -1.4005 -9.2829 27 1 4.6916 0.1190 -9.4317 28 1 4.8691 -1.9067 -8.1104 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 3.9824 -0.4627 0.4317 35 1 6.1558 -0.5463 0.1997 36 1 5.6341 -3.5919 4.4145 37 1 6.2765 -2.1277 5.2229 38 1 7.7837 -4.5290 4.1370 39 1 8.1750 -3.4887 5.5468 40 1 9.1475 -1.8209 4.2033 41 1 9.4189 -3.1917 3.0880 42 1 1.4496 -1.4980 -1.4099 43 1 1.0871 0.6162 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5027 1.0612 -4.8015 46 1 3.1283 1.8419 -7.9857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265782545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:38 Heat of formation + Delta-G solvation = 12.516338 kcal Electronic energy + Delta-G solvation = -28157.174867 eV Core-core repulsion = 24083.556633 eV Total energy + Delta-G solvation = -4073.618234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93381 -39.24079 -38.35194 -36.82559 -36.55002 -34.06487 -33.63065 -31.42785 -31.20480 -30.55627 -29.66805 -27.87615 -26.40242 -25.75116 -23.91648 -22.65230 -22.11567 -21.01935 -20.50304 -19.56077 -19.25911 -17.92011 -17.53921 -16.78503 -16.23110 -15.84481 -15.45236 -15.06192 -14.90947 -14.69866 -14.53019 -14.42461 -14.19647 -13.93363 -13.81445 -13.58732 -13.45753 -13.18261 -13.02255 -12.52194 -12.43287 -12.31920 -12.16914 -12.01140 -11.67240 -11.61231 -11.56664 -11.38844 -11.04807 -11.01397 -10.93414 -10.39361 -10.21966 -9.74539 -9.52143 -9.51121 -8.95384 -8.58722 -8.48920 -8.09415 -7.96322 -6.42129 -3.82859 1.42327 1.97340 2.12808 3.17843 3.26748 3.32784 3.41239 3.57259 3.69138 3.90264 4.07528 4.10248 4.26710 4.31215 4.37475 4.72569 4.83247 4.93971 4.99708 5.02335 5.12295 5.14895 5.16281 5.22683 5.28859 5.35412 5.45441 5.48631 5.53981 5.62409 5.72851 5.73906 5.84736 5.92136 6.03317 6.08165 6.26424 6.32170 6.48330 6.65246 7.16792 7.48762 7.55115 7.61634 7.81100 8.06035 8.47597 8.60753 9.17820 9.53985 10.05316 10.75551 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002488 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.895372 B =11249.740865 C =13181.294254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.084 0.916 4 C 0.138 3.862 5 N -0.709 5.709 6 C 0.594 3.406 7 O -0.562 6.562 8 C -0.277 4.277 9 C 0.091 3.909 10 N -0.274 5.274 11 N -0.388 5.388 12 C 0.134 3.866 13 C -0.068 4.068 14 C -0.134 4.134 15 C 0.126 3.874 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.408 0.592 35 H 0.199 0.801 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.353 0.647 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 -2.145 23.462 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.013 3.987 5 N -0.359 5.359 6 C 0.382 3.618 7 O -0.442 6.442 8 C -0.292 4.292 9 C -0.097 4.097 10 N -0.091 5.091 11 N -0.168 5.168 12 C 0.001 3.999 13 C -0.107 4.107 14 C -0.172 4.172 15 C 0.005 3.995 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.244 0.756 35 H 0.216 0.784 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.173 0.827 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.394 -2.966 23.751 24.775 hybrid contribution -1.386 0.571 -1.495 2.117 sum 5.008 -2.395 22.256 22.938 Atomic orbital electron populations 1.22433 0.96314 1.02700 1.02555 1.21863 0.93323 0.98349 0.90805 0.89782 1.21282 0.80143 1.00819 0.96468 1.45538 1.07499 1.59557 1.23322 1.17181 0.85327 0.77233 0.82073 1.90719 1.69824 1.49604 1.34103 1.19591 0.94002 1.16944 0.98678 1.24342 0.89183 0.97535 0.98667 1.77259 1.21211 1.16075 0.94599 1.50170 1.07071 1.43989 1.15544 1.22501 0.86642 0.95502 0.95296 1.20973 0.98321 0.99749 0.91645 1.22874 0.94066 0.99536 1.00764 1.22434 0.91893 0.96864 0.88270 1.60181 1.57738 1.09161 1.02507 1.21722 1.00039 0.95648 0.90913 1.19815 0.85225 0.88262 0.84200 1.90539 1.55227 1.16211 1.84608 1.41870 1.57793 1.12457 1.07935 1.19692 1.39949 0.96415 0.86744 0.87946 1.25254 0.97667 0.95762 0.99253 1.69611 1.48755 1.08836 1.27136 0.85868 0.78886 0.78995 0.80623 1.20450 1.20929 1.19389 0.91872 0.91986 0.91989 0.91616 0.91471 0.75636 0.78434 0.87703 0.88098 0.89187 0.87749 0.89015 0.88648 0.82652 0.93740 0.89610 0.77493 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.16 37.16 0.34 -1.40 16 2 C 0.07 0.75 2.75 -67.72 -0.19 0.56 16 3 H 0.08 0.87 7.80 -51.92 -0.40 0.46 16 4 C 0.14 1.63 5.37 -4.04 -0.02 1.61 16 5 N -0.71 -9.20 5.38 -61.39 -0.33 -9.53 16 6 C 0.59 8.74 7.81 -12.52 -0.10 8.65 16 7 O -0.56 -9.56 16.90 5.27 0.09 -9.47 16 8 C -0.28 -3.81 6.15 -104.84 -0.64 -4.46 16 9 C 0.09 1.21 11.52 -16.88 -0.19 1.01 16 10 N -0.27 -3.88 12.64 30.92 0.39 -3.48 16 11 N -0.39 -4.53 4.81 -55.09 -0.27 -4.80 16 12 C 0.13 1.61 7.31 -81.22 -0.59 1.02 16 13 C -0.07 -0.53 6.86 -26.72 -0.18 -0.72 16 14 C -0.13 -0.61 7.18 -25.19 -0.18 -0.79 16 15 C 0.13 0.83 7.77 -2.91 -0.02 0.81 16 16 N -0.66 -9.65 5.32 -107.99 -0.57 -10.22 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.44 9.96 7.82 -10.99 -0.09 9.88 16 19 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 20 N -0.56 -13.94 5.29 -10.97 -0.06 -14.00 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.41 5.09 7.11 -40.82 -0.29 4.80 16 35 H 0.20 2.20 7.52 -52.49 -0.39 1.80 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.35 5.58 8.17 -39.29 -0.32 5.26 16 43 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 44 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 45 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -35.63 389.19 -7.90 -43.53 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -6.66 Total: 15.97 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -2.14 Total: 9.04 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -0.11 Total: -65.65 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.18 Total: -24.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.63 -7.90 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265782545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.048 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds