Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46699 * 2 1 4 4 C 1.52995 * 109.47203 * 119.99298 * 2 1 3 5 5 N 1.46500 * 109.47322 * 175.00236 * 4 2 1 6 6 C 1.34776 * 120.00304 * 180.02562 * 5 4 2 7 7 O 1.21603 * 119.99880 * 359.97438 * 6 5 4 8 8 C 1.47424 * 120.00309 * 180.02562 * 6 5 4 9 9 C 1.41710 * 126.49956 * 359.81460 * 8 6 5 10 10 N 1.30284 * 108.00873 * 179.97438 * 9 8 6 11 11 N 1.40515 * 109.02032 * 359.97438 * 10 9 8 12 12 C 1.34220 * 108.28096 * 0.22920 * 11 10 9 13 13 C 1.51387 * 110.37017 * 179.67565 * 12 11 10 14 14 C 1.54564 * 104.14530 * 343.53950 * 13 12 11 15 15 C 1.47252 * 140.81325 * 180.25496 * 11 10 9 16 16 N 1.46896 * 109.47458 * 239.99777 * 2 1 3 17 17 C 1.46904 * 111.00024 * 84.99765 * 16 2 1 18 18 C 1.50697 * 109.47014 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00143 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00136 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00487 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99232 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00030 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00407 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47027 * 89.99751 * 25 23 21 27 27 H 1.48495 * 109.47389 * 209.99816 * 25 23 21 28 28 H 1.48503 * 109.47082 * 330.00092 * 25 23 21 29 29 H 1.08998 * 109.47255 * 300.00656 * 1 2 3 30 30 H 1.09004 * 109.46953 * 60.00066 * 1 2 3 31 31 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46878 * 55.00262 * 4 2 1 33 33 H 1.08997 * 109.47520 * 295.00543 * 4 2 1 34 34 H 0.96998 * 120.00066 * 359.97438 * 5 4 2 35 35 H 1.07998 * 126.00174 * 0.02695 * 9 8 6 36 36 H 1.08997 * 110.49619 * 224.87001 * 13 12 11 37 37 H 1.09002 * 110.49593 * 102.20197 * 13 12 11 38 38 H 1.09003 * 110.98784 * 266.93735 * 14 13 12 39 39 H 1.08999 * 111.02967 * 143.14291 * 14 13 12 40 40 H 1.09002 * 110.23109 * 78.05517 * 15 11 10 41 41 H 1.09000 * 110.22779 * 316.18379 * 15 11 10 42 42 H 1.00906 * 110.99496 * 321.04757 * 16 2 1 43 43 H 1.08999 * 109.47009 * 300.00286 * 17 16 2 44 44 H 1.09001 * 109.47134 * 59.99873 * 17 16 2 45 45 H 0.97005 * 120.00130 * 359.97438 * 20 18 17 46 46 H 0.96997 * 119.99688 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1730 -1.4288 2.1908 7 8 3.5683 -1.8850 3.1422 8 6 5.6423 -1.5341 2.1321 9 6 6.4809 -1.0563 1.0945 10 7 7.7129 -1.3392 1.4097 11 7 7.7279 -2.0028 2.6482 12 6 6.4618 -2.1210 3.0779 13 6 6.4223 -2.8391 4.4100 14 6 7.8110 -3.5087 4.5195 15 6 8.6676 -2.6005 3.6116 16 7 2.0197 -0.6925 -1.1993 17 6 2.0825 0.2225 -2.3469 18 6 2.5874 -0.5219 -3.5559 19 8 2.8670 -1.6990 -3.4703 20 7 2.7274 0.1200 -4.7327 21 6 3.1863 -0.5574 -5.8328 22 1 3.4360 -1.6053 -5.7562 23 6 3.3310 0.1046 -7.0458 24 7 3.0276 1.3799 -7.1388 25 14 3.9569 -0.8181 -8.5446 26 1 2.8077 -1.4005 -9.2829 27 1 4.6916 0.1190 -9.4317 28 1 4.8691 -1.9067 -8.1104 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 3.9824 -0.4627 0.4317 35 1 6.1558 -0.5463 0.1997 36 1 5.6341 -3.5919 4.4145 37 1 6.2765 -2.1277 5.2229 38 1 7.7837 -4.5290 4.1370 39 1 8.1750 -3.4887 5.5468 40 1 9.1475 -1.8209 4.2033 41 1 9.4189 -3.1917 3.0880 42 1 1.4496 -1.4980 -1.4099 43 1 1.0871 0.6162 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5027 1.0612 -4.8015 46 1 3.1283 1.8419 -7.9857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265782545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = -15.971390 kcal Electronic energy + Delta-G solvation = -28158.410187 eV Core-core repulsion = 24083.556633 eV Total energy + Delta-G solvation = -4074.853554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.80256 -40.40633 -40.00684 -38.03624 -37.27898 -35.94269 -34.88487 -33.25207 -32.30917 -31.60993 -30.43573 -28.65401 -27.93408 -26.75308 -25.59545 -23.46999 -22.86904 -21.98100 -21.38035 -21.07874 -20.48235 -19.89120 -18.52143 -17.75187 -17.41363 -17.10045 -16.64867 -16.49331 -16.28157 -15.84405 -15.80656 -15.54077 -15.34732 -15.10446 -14.84333 -14.57712 -14.41316 -14.23426 -14.06796 -13.67507 -13.60242 -13.39455 -13.29441 -13.06146 -13.01554 -12.75346 -12.52063 -12.47898 -12.38902 -12.12189 -12.11003 -11.97425 -11.84459 -11.48497 -10.88565 -10.35669 -10.30721 -10.03404 -9.98514 -9.55685 -9.29780 -8.45087 -5.92992 0.50257 1.10089 1.24153 1.38201 1.42117 1.54405 2.09688 2.29696 2.39795 2.51050 2.94325 3.06842 3.22940 3.47553 3.56708 3.67841 3.89218 3.91058 4.00956 4.14978 4.15847 4.36221 4.36995 4.40181 4.48840 4.52871 4.53721 4.65282 4.69484 4.73117 4.83913 4.90616 4.94178 4.99079 5.04771 5.08209 5.29754 5.38396 5.42920 5.60946 5.68368 5.92433 6.13603 6.40653 6.54276 6.63102 6.75049 7.15647 7.38201 7.60373 8.16108 8.72229 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002488 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.895372 B =11249.740865 C =13181.294254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.101 0.899 4 C 0.139 3.861 5 N -0.704 5.704 6 C 0.591 3.409 7 O -0.592 6.592 8 C -0.309 4.309 9 C 0.087 3.913 10 N -0.309 5.309 11 N -0.389 5.389 12 C 0.129 3.871 13 C -0.071 4.071 14 C -0.116 4.116 15 C 0.111 3.889 16 N -0.674 5.674 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.410 0.590 35 H 0.208 0.792 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.345 0.655 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -1.696 24.825 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 H 0.119 0.881 4 C 0.014 3.986 5 N -0.354 5.354 6 C 0.380 3.620 7 O -0.475 6.475 8 C -0.324 4.324 9 C -0.101 4.101 10 N -0.127 5.127 11 N -0.168 5.168 12 C -0.006 4.006 13 C -0.109 4.109 14 C -0.154 4.154 15 C -0.007 4.007 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.246 0.754 35 H 0.224 0.776 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.161 0.839 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.164 0.836 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.754 -2.482 25.116 26.127 hybrid contribution -1.468 0.397 -1.818 2.370 sum 5.285 -2.085 23.299 23.981 Atomic orbital electron populations 1.22378 0.94797 1.02810 1.03513 1.21873 0.94417 0.98466 0.88596 0.88140 1.21349 0.79404 1.00436 0.97386 1.45565 1.08018 1.58912 1.22906 1.17372 0.85806 0.76893 0.81911 1.90684 1.70451 1.51100 1.35222 1.19725 0.93788 1.18914 0.99995 1.24522 0.89075 0.97464 0.99013 1.77131 1.21691 1.17441 0.96450 1.50613 1.08149 1.43076 1.14980 1.23187 0.86529 0.94524 0.96364 1.21179 1.00250 0.99741 0.89766 1.22939 0.91250 0.98780 1.02422 1.22962 0.91919 0.97918 0.87926 1.60150 1.58524 1.09071 1.02912 1.21578 1.01333 0.95286 0.88416 1.20956 0.83242 0.88002 0.85196 1.90512 1.56531 1.18403 1.85480 1.41933 1.58468 1.12623 1.08175 1.19619 1.41974 0.95841 0.88579 0.90526 1.25978 0.97377 0.96595 1.01294 1.69665 1.48854 1.09581 1.28017 0.84983 0.78419 0.77856 0.77432 1.19694 1.19600 1.19953 0.89901 0.91965 0.92384 0.92947 0.90254 0.75390 0.77552 0.88301 0.86674 0.88732 0.83929 0.86945 0.87667 0.83621 0.91434 0.87251 0.76955 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.16 71.98 0.66 -2.34 16 2 C 0.08 1.55 2.75 44.91 0.12 1.68 16 3 H 0.10 1.77 7.80 -2.38 -0.02 1.75 16 4 C 0.14 3.17 5.37 86.38 0.46 3.63 16 5 N -0.70 -18.27 5.38 -466.38 -2.51 -20.77 16 6 C 0.59 17.72 7.81 86.66 0.68 18.39 16 7 O -0.59 -20.41 16.90 -4.04 -0.07 -20.48 16 8 C -0.31 -8.70 6.15 -20.01 -0.12 -8.82 16 9 C 0.09 2.38 11.52 85.78 0.99 3.36 16 10 N -0.31 -8.88 12.64 -56.07 -0.71 -9.58 16 11 N -0.39 -8.85 4.81 -328.21 -1.58 -10.43 16 12 C 0.13 3.07 7.31 42.41 0.31 3.38 16 13 C -0.07 -1.00 6.86 30.60 0.21 -0.79 16 14 C -0.12 -0.73 7.18 31.59 0.23 -0.50 16 15 C 0.11 1.23 7.77 86.70 0.67 1.91 16 16 N -0.67 -19.01 5.32 -495.58 -2.63 -21.65 16 17 C 0.07 2.04 5.97 85.56 0.51 2.55 16 18 C 0.44 20.01 7.82 87.66 0.69 20.70 16 19 O -0.62 -33.74 15.78 -3.06 -0.05 -33.79 16 20 N -0.57 -28.76 5.29 -307.00 -1.62 -30.38 16 21 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 24 N -0.92 -49.33 13.05 21.66 0.28 -49.04 16 25 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.09 7.45 -2.38 -0.02 1.07 16 31 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.41 10.22 7.11 -92.71 -0.66 9.56 16 35 H 0.21 4.83 7.52 -2.91 -0.02 4.80 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.14 -0.14 8.14 -2.39 -0.02 -0.15 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.34 10.83 8.17 -89.69 -0.73 10.09 16 43 H 0.07 1.83 7.44 -2.39 -0.02 1.81 16 44 H 0.11 2.92 8.06 -2.39 -0.02 2.91 16 45 H 0.40 18.77 7.90 -92.70 -0.73 18.04 16 46 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -79.47 389.19 -1.26 -80.73 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -1.08 Total: 45.19 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.69 Total: 25.11 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -8.77 Total: -141.86 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.12 Total: -54.27 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.47 -1.26 -80.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265782545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.756 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds