Wall clock time and date at job start Tue Mar 31 2020 18:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47125 * 2 1 4 4 C 1.35031 * 124.88402 * 125.02205 * 3 2 1 5 5 C 1.35364 * 107.22817 * 179.76743 * 4 3 2 6 6 C 1.41502 * 105.50460 * 0.35733 * 5 4 3 7 7 C 1.47710 * 126.52418 * 179.90125 * 6 5 4 8 8 O 1.21577 * 119.99646 * 359.71331 * 7 6 5 9 9 N 1.34778 * 120.00133 * 179.71347 * 7 6 5 10 10 C 1.47015 * 125.64845 * 359.97427 * 9 7 6 11 11 C 1.54325 * 107.27065 * 178.98781 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 N 1.46896 * 111.00696 * 153.57676 * 12 11 10 15 15 C 1.46900 * 110.99978 * 155.00190 * 14 12 11 16 16 C 1.50703 * 109.46998 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99930 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99900 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99937 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99935 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46741 * 90.00206 * 23 21 19 25 25 H 1.48491 * 109.47147 * 210.00237 * 23 21 19 26 26 H 1.48494 * 109.47194 * 330.00913 * 23 21 19 27 27 C 1.47425 * 125.64271 * 180.02562 * 9 7 6 28 28 N 1.28469 * 124.88316 * 305.03158 * 3 2 1 29 29 H 1.08997 * 109.47188 * 299.99567 * 1 2 3 30 30 H 1.08995 * 109.47085 * 60.00114 * 1 2 3 31 31 H 1.09003 * 109.46611 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47694 * 240.00283 * 2 1 3 33 33 H 1.09002 * 109.47464 * 119.99802 * 2 1 3 34 34 H 1.07996 * 126.38743 * 0.03752 * 4 3 2 35 35 H 1.08004 * 127.25299 * 180.24098 * 5 4 3 36 36 H 1.09000 * 109.88350 * 59.56990 * 10 9 7 37 37 H 1.08998 * 109.88602 * 298.40656 * 10 9 7 38 38 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 39 39 H 1.08993 * 110.72326 * 96.17079 * 11 10 9 40 40 H 1.00897 * 111.00138 * 31.04945 * 14 12 11 41 41 H 1.08994 * 109.47388 * 299.99718 * 15 14 12 42 42 H 1.09007 * 109.47293 * 59.99987 * 15 14 12 43 43 H 0.96999 * 119.99644 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99988 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.36633 * 85.25141 * 27 9 7 46 46 H 1.08996 * 110.37033 * 322.91522 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8751 1.8975 0.9071 5 6 3.0869 3.1907 0.5679 6 6 2.3000 3.4126 -0.5870 7 6 2.1855 4.6762 -1.3433 8 8 2.8025 5.6593 -0.9813 9 7 1.3970 4.7394 -2.4345 10 6 0.5996 3.6317 -2.9807 11 6 -0.1566 4.1748 -4.2115 12 6 -0.1826 5.7050 -3.9560 13 1 -0.9978 5.9753 -3.2848 14 7 -0.2754 6.4484 -5.2196 15 6 -0.8791 7.7709 -5.0092 16 6 -0.9570 8.5025 -6.3244 17 8 -0.5492 7.9743 -7.3372 18 7 -1.4788 9.7442 -6.3750 19 6 -1.5501 10.4095 -7.5716 20 1 -1.1877 9.9388 -8.4736 21 6 -2.0886 11.6894 -7.6238 22 7 -2.5291 12.2622 -6.5263 23 14 -2.1851 12.5962 -9.2542 24 1 -3.4808 12.2929 -9.9133 25 1 -2.0820 14.0580 -9.0143 26 1 -1.0694 12.1585 -10.1309 27 6 1.1922 5.9306 -3.2786 28 7 1.6929 2.2756 -0.8629 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3133 1.3747 1.7444 35 1 3.7214 3.9037 1.0734 36 1 -0.1122 3.2831 -2.2324 37 1 1.2560 2.8146 -3.2799 38 1 -1.1692 3.7732 -4.2502 39 1 0.3854 3.9463 -5.1290 40 1 -0.7882 5.9227 -5.9115 41 1 -1.8821 7.6515 -4.5996 42 1 -0.2674 8.3428 -4.3114 43 1 -1.8046 10.1667 -5.5649 44 1 -2.9053 13.1555 -6.5629 45 1 1.9781 6.0025 -4.0304 46 1 1.1695 6.8311 -2.6649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265932207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:55 Heat of formation + Delta-G solvation = 22.132420 kcal Electronic energy + Delta-G solvation = -27965.656946 eV Core-core repulsion = 23892.455696 eV Total energy + Delta-G solvation = -4073.201249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95875 -39.91285 -38.33886 -37.49937 -35.01769 -34.68074 -33.75397 -31.40310 -31.15189 -30.70661 -30.26495 -28.58000 -26.51806 -25.12916 -24.05881 -23.07818 -22.18380 -21.43032 -20.63284 -19.52087 -19.18088 -17.91169 -17.71655 -17.04233 -16.71613 -16.26117 -15.77033 -15.48804 -15.08394 -14.91359 -14.71155 -14.41120 -14.04295 -13.93830 -13.76761 -13.53902 -13.37873 -13.28027 -12.96888 -12.79386 -12.69036 -12.55121 -12.22761 -11.99476 -11.71880 -11.62759 -11.43058 -11.16001 -11.05908 -10.99111 -10.76590 -10.37046 -10.20501 -10.18805 -9.56681 -9.48536 -9.37121 -8.68033 -8.44987 -8.10859 -7.93718 -6.39007 -3.79846 1.36195 1.85830 2.04867 2.86662 3.20043 3.28685 3.30314 3.34955 3.86219 3.93107 4.10205 4.24143 4.30077 4.31398 4.41380 4.51709 4.56347 4.65940 4.87152 4.98010 5.02592 5.16465 5.17934 5.25871 5.27078 5.36383 5.43574 5.46958 5.52376 5.61338 5.70449 5.78641 5.89040 5.95663 5.99354 6.04520 6.07297 6.26153 6.32089 6.43384 7.20183 7.38502 7.57818 7.58183 7.63405 8.08766 8.10408 8.63736 9.20367 9.56913 10.08153 10.78696 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.001825 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.443248 B =15340.145674 C =15864.091845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.285 5.285 4 C -0.021 4.021 5 C -0.178 4.178 6 C -0.012 4.012 7 C 0.616 3.384 8 O -0.533 6.533 9 N -0.606 5.606 10 C 0.117 3.883 11 C -0.138 4.138 12 C 0.073 3.927 13 H 0.062 0.938 14 N -0.656 5.656 15 C 0.049 3.951 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.116 3.884 28 N -0.254 5.254 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.355 0.645 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.084 0.916 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 -26.781 17.883 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.074 5.074 4 C -0.163 4.163 5 C -0.206 4.206 6 C -0.172 4.172 7 C 0.403 3.597 8 O -0.408 6.408 9 N -0.340 5.340 10 C -0.006 4.006 11 C -0.176 4.176 12 C -0.038 4.038 13 H 0.080 0.920 14 N -0.290 5.290 15 C -0.083 4.083 16 C 0.227 3.773 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.007 4.007 28 N -0.091 5.091 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.176 0.824 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.605 -26.798 16.747 32.093 hybrid contribution -0.677 0.796 0.582 1.196 sum 4.929 -26.002 17.329 31.634 Atomic orbital electron populations 1.22079 0.92999 1.03467 1.04026 1.22009 0.96779 0.76738 1.04759 1.45694 1.32423 1.10418 1.18834 1.22868 0.99295 0.95504 0.98664 1.21787 1.04381 0.96143 0.98336 1.21873 1.02724 0.93033 0.99586 1.16489 0.78843 0.85633 0.78774 1.90818 1.45974 1.35906 1.68093 1.48212 1.45289 1.13721 1.26792 1.21961 0.94260 0.89355 0.95044 1.22908 1.01212 0.94904 0.98588 1.22651 0.96294 0.92710 0.92133 0.92001 1.59918 1.58207 1.03266 1.07569 1.21768 0.97813 0.91016 0.97750 1.19775 0.84300 0.83463 0.89807 1.90522 1.52429 1.67904 1.35909 1.41864 1.53961 1.13322 1.10848 1.19704 1.37977 0.97363 0.87830 0.87901 1.25269 0.96947 0.96952 0.98823 1.69613 1.41351 1.15948 1.27355 0.85850 0.78777 0.78204 0.81409 1.20463 1.20932 1.19399 1.22314 0.97540 0.87571 0.93231 1.73579 1.21976 0.98028 1.15486 0.91827 0.90664 0.90189 0.88832 0.87917 0.80192 0.82038 0.91061 0.90939 0.89978 0.89285 0.82403 0.93641 0.89440 0.77431 0.91877 0.89786 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.02 37.16 0.37 -0.19 16 2 C 0.12 0.38 7.12 -4.04 -0.03 0.35 16 3 N -0.28 -2.09 3.41 -61.33 -0.21 -2.30 16 4 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 5 C -0.18 -1.79 10.81 -39.36 -0.43 -2.22 16 6 C -0.01 -0.15 6.98 -82.76 -0.58 -0.73 16 7 C 0.62 9.12 7.86 -12.39 -0.10 9.03 16 8 O -0.53 -9.55 17.18 5.30 0.09 -9.46 16 9 N -0.61 -8.05 3.33 -171.68 -0.57 -8.63 16 10 C 0.12 1.22 5.54 -3.07 -0.02 1.20 16 11 C -0.14 -1.38 6.35 -24.90 -0.16 -1.54 16 12 C 0.07 0.93 3.38 -65.56 -0.22 0.71 16 13 H 0.06 0.76 7.83 -51.93 -0.41 0.35 16 14 N -0.66 -10.42 6.04 -105.72 -0.64 -11.06 16 15 C 0.05 0.87 6.03 -4.97 -0.03 0.84 16 16 C 0.44 10.48 7.82 -10.98 -0.09 10.39 16 17 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 18 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 23 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 C 0.12 1.63 6.60 -2.53 -0.02 1.61 16 28 N -0.25 -2.60 9.19 33.42 0.31 -2.30 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.05 8.04 -51.93 -0.42 -0.37 16 34 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 37 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.36 5.64 8.14 -39.29 -0.32 5.32 16 41 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.09 1.48 8.14 -51.92 -0.42 1.05 16 43 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -35.74 389.34 -7.99 -43.73 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.84 Total: 11.23 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -1.72 Total: 11.03 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.44 Total: -62.87 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.18 Total: -25.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.74 -7.99 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265932207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.858 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds