Wall clock time and date at job start Tue Mar 31 2020 18:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47125 * 2 1 4 4 C 1.35031 * 124.88402 * 125.02205 * 3 2 1 5 5 C 1.35364 * 107.22817 * 179.76743 * 4 3 2 6 6 C 1.41502 * 105.50460 * 0.35733 * 5 4 3 7 7 C 1.47710 * 126.52418 * 179.90125 * 6 5 4 8 8 O 1.21577 * 119.99646 * 359.71331 * 7 6 5 9 9 N 1.34778 * 120.00133 * 179.71347 * 7 6 5 10 10 C 1.47015 * 125.64845 * 359.97427 * 9 7 6 11 11 C 1.54325 * 107.27065 * 178.98781 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 N 1.46896 * 111.00696 * 153.57676 * 12 11 10 15 15 C 1.46900 * 110.99978 * 155.00190 * 14 12 11 16 16 C 1.50703 * 109.46998 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99930 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99900 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99937 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99935 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46741 * 90.00206 * 23 21 19 25 25 H 1.48491 * 109.47147 * 210.00237 * 23 21 19 26 26 H 1.48494 * 109.47194 * 330.00913 * 23 21 19 27 27 C 1.47425 * 125.64271 * 180.02562 * 9 7 6 28 28 N 1.28469 * 124.88316 * 305.03158 * 3 2 1 29 29 H 1.08997 * 109.47188 * 299.99567 * 1 2 3 30 30 H 1.08995 * 109.47085 * 60.00114 * 1 2 3 31 31 H 1.09003 * 109.46611 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47694 * 240.00283 * 2 1 3 33 33 H 1.09002 * 109.47464 * 119.99802 * 2 1 3 34 34 H 1.07996 * 126.38743 * 0.03752 * 4 3 2 35 35 H 1.08004 * 127.25299 * 180.24098 * 5 4 3 36 36 H 1.09000 * 109.88350 * 59.56990 * 10 9 7 37 37 H 1.08998 * 109.88602 * 298.40656 * 10 9 7 38 38 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 39 39 H 1.08993 * 110.72326 * 96.17079 * 11 10 9 40 40 H 1.00897 * 111.00138 * 31.04945 * 14 12 11 41 41 H 1.08994 * 109.47388 * 299.99718 * 15 14 12 42 42 H 1.09007 * 109.47293 * 59.99987 * 15 14 12 43 43 H 0.96999 * 119.99644 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99988 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.36633 * 85.25141 * 27 9 7 46 46 H 1.08996 * 110.37033 * 322.91522 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8751 1.8975 0.9071 5 6 3.0869 3.1907 0.5679 6 6 2.3000 3.4126 -0.5870 7 6 2.1855 4.6762 -1.3433 8 8 2.8025 5.6593 -0.9813 9 7 1.3970 4.7394 -2.4345 10 6 0.5996 3.6317 -2.9807 11 6 -0.1566 4.1748 -4.2115 12 6 -0.1826 5.7050 -3.9560 13 1 -0.9978 5.9753 -3.2848 14 7 -0.2754 6.4484 -5.2196 15 6 -0.8791 7.7709 -5.0092 16 6 -0.9570 8.5025 -6.3244 17 8 -0.5492 7.9743 -7.3372 18 7 -1.4788 9.7442 -6.3750 19 6 -1.5501 10.4095 -7.5716 20 1 -1.1877 9.9388 -8.4736 21 6 -2.0886 11.6894 -7.6238 22 7 -2.5291 12.2622 -6.5263 23 14 -2.1851 12.5962 -9.2542 24 1 -3.4808 12.2929 -9.9133 25 1 -2.0820 14.0580 -9.0143 26 1 -1.0694 12.1585 -10.1309 27 6 1.1922 5.9306 -3.2786 28 7 1.6929 2.2756 -0.8629 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3133 1.3747 1.7444 35 1 3.7214 3.9037 1.0734 36 1 -0.1122 3.2831 -2.2324 37 1 1.2560 2.8146 -3.2799 38 1 -1.1692 3.7732 -4.2502 39 1 0.3854 3.9463 -5.1290 40 1 -0.7882 5.9227 -5.9115 41 1 -1.8821 7.6515 -4.5996 42 1 -0.2674 8.3428 -4.3114 43 1 -1.8046 10.1667 -5.5649 44 1 -2.9053 13.1555 -6.5629 45 1 1.9781 6.0025 -4.0304 46 1 1.1695 6.8311 -2.6649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265932207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:54 Heat of formation + Delta-G solvation = -5.197528 kcal Electronic energy + Delta-G solvation = -27966.842061 eV Core-core repulsion = 23892.455696 eV Total energy + Delta-G solvation = -4074.386365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.61525 -40.99423 -40.12399 -38.75064 -36.23154 -35.62395 -35.38773 -33.27789 -32.21806 -31.52542 -30.91406 -29.66928 -28.02572 -26.32716 -25.34168 -23.99228 -22.90705 -22.04314 -21.67689 -21.10110 -20.35918 -19.90052 -18.54143 -17.91676 -17.78325 -17.42747 -16.93363 -16.71520 -16.48366 -16.30057 -15.93807 -15.47817 -15.25934 -15.16177 -14.79450 -14.56753 -14.50215 -14.23819 -13.95759 -13.78048 -13.77258 -13.49591 -13.26444 -13.16658 -12.94156 -12.84197 -12.64056 -12.41346 -12.24960 -12.14851 -12.10538 -11.83908 -11.70073 -11.50409 -11.33823 -10.35499 -10.23580 -10.07822 -10.01795 -9.72129 -9.42306 -8.46446 -5.95381 0.51086 1.20757 1.38309 1.42010 1.51153 1.55181 1.91922 2.04663 2.29330 2.31050 2.89466 3.20638 3.21439 3.38419 3.58658 3.67056 3.88995 3.98797 4.08733 4.09824 4.22679 4.27365 4.32241 4.35372 4.40561 4.48653 4.58397 4.63447 4.73730 4.78397 4.82396 4.83607 4.88165 4.91354 4.95558 5.12322 5.17573 5.27737 5.40800 5.41382 5.87031 5.92856 6.07378 6.32673 6.42056 6.59599 6.81542 7.08083 7.12321 7.55844 8.10650 8.70952 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.001825 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.443248 B =15340.145674 C =15864.091845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.277 5.277 4 C 0.003 3.997 5 C -0.207 4.207 6 C -0.048 4.048 7 C 0.608 3.392 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.123 3.877 11 C -0.126 4.126 12 C 0.080 3.920 13 H 0.075 0.925 14 N -0.668 5.668 15 C 0.064 3.936 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.115 3.885 28 N -0.260 5.260 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.227 0.773 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.356 0.644 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.066 0.934 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 -29.413 19.047 35.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.066 5.066 4 C -0.140 4.140 5 C -0.235 4.235 6 C -0.205 4.205 7 C 0.396 3.604 8 O -0.459 6.459 9 N -0.339 5.339 10 C 0.000 4.000 11 C -0.164 4.164 12 C -0.030 4.030 13 H 0.093 0.907 14 N -0.302 5.302 15 C -0.068 4.068 16 C 0.227 3.773 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.008 4.008 28 N -0.098 5.098 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.176 0.824 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.177 0.823 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.801 -29.463 17.920 34.817 hybrid contribution -0.413 1.460 0.282 1.543 sum 4.387 -28.003 18.202 33.686 Atomic orbital electron populations 1.22064 0.93139 1.04547 1.02578 1.22485 0.96690 0.74635 1.07226 1.46212 1.31422 1.11227 1.17768 1.23458 0.97563 0.94257 0.98703 1.21980 1.05177 0.97969 0.98414 1.21643 1.05168 0.92845 1.00893 1.16980 0.78227 0.86231 0.78930 1.90767 1.47911 1.37735 1.69467 1.48304 1.45139 1.14163 1.26322 1.22057 0.94124 0.88513 0.95259 1.22901 1.02747 0.92572 0.98182 1.22611 0.95481 0.94207 0.90742 0.90707 1.59822 1.58278 1.02873 1.09234 1.21609 0.99774 0.91406 0.94051 1.20799 0.82208 0.82821 0.91519 1.90489 1.53555 1.68632 1.38084 1.41941 1.54709 1.14095 1.10319 1.19682 1.39873 0.98555 0.88216 0.90186 1.26072 0.95951 0.97091 1.02316 1.69677 1.41214 1.16390 1.28883 0.84904 0.78794 0.77266 0.77229 1.19432 1.19655 1.19820 1.22212 0.98086 0.87720 0.92822 1.73499 1.21977 0.97859 1.16419 0.92722 0.92620 0.87865 0.87734 0.84143 0.75609 0.82431 0.90025 0.90459 0.87184 0.89446 0.82260 0.90883 0.88509 0.77005 0.91311 0.91554 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.02 71.98 0.72 0.08 16 2 C 0.11 0.29 7.12 86.38 0.61 0.91 16 3 N -0.28 -3.33 3.41 -347.95 -1.19 -4.52 16 4 C 0.00 0.03 11.40 83.54 0.95 0.99 16 5 C -0.21 -4.10 10.81 22.41 0.24 -3.85 16 6 C -0.05 -1.18 6.98 42.46 0.30 -0.89 16 7 C 0.61 18.91 7.86 86.75 0.68 19.59 16 8 O -0.58 -22.31 17.18 -3.96 -0.07 -22.38 16 9 N -0.61 -16.49 3.33 -815.34 -2.71 -19.20 16 10 C 0.12 2.43 5.54 86.73 0.48 2.91 16 11 C -0.13 -2.30 6.35 31.78 0.20 -2.10 16 12 C 0.08 1.96 3.38 46.31 0.16 2.12 16 13 H 0.08 1.69 7.83 -2.39 -0.02 1.67 16 14 N -0.67 -20.87 6.04 -488.40 -2.95 -23.81 16 15 C 0.06 2.23 6.03 85.56 0.52 2.75 16 16 C 0.44 21.16 7.82 87.66 0.69 21.84 16 17 O -0.62 -34.61 15.78 -3.05 -0.05 -34.65 16 18 N -0.57 -29.97 5.29 -306.98 -1.62 -31.60 16 19 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 22 N -0.92 -50.56 13.05 21.66 0.28 -50.27 16 23 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.12 3.33 6.60 86.86 0.57 3.91 16 28 N -0.26 -5.01 9.19 -48.17 -0.44 -5.45 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.14 -0.62 8.04 -2.39 -0.02 -0.64 16 34 H 0.23 0.19 8.06 -2.91 -0.02 0.16 16 35 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.08 1.48 7.66 -2.39 -0.02 1.46 16 37 H 0.08 1.48 7.77 -2.39 -0.02 1.46 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 40 H 0.36 11.04 8.14 -89.70 -0.73 10.31 16 41 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 42 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 43 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 44 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.06 1.99 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -81.46 389.34 0.24 -81.22 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.45 Total: 35.55 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 7.40 Total: 29.48 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -8.63 Total: -134.85 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -0.12 Total: -57.03 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -81.46 0.24 -81.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265932207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.027 kcal (2) G-P(sol) polarization free energy of solvation -81.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds