Wall clock time and date at job start Tue Mar 31 2020 20:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47549 * 2 1 4 4 C 1.46908 * 110.99328 * 76.02643 * 3 2 1 5 5 C 1.52999 * 109.46393 * 199.54518 * 4 3 2 6 6 C 1.53004 * 109.46645 * 174.89534 * 5 4 3 7 7 N 1.46505 * 109.47096 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00231 * 180.02562 * 7 6 5 9 9 O 1.21476 * 119.99597 * 0.26742 * 8 7 6 10 10 C 1.48452 * 120.00383 * 180.02562 * 8 7 6 11 11 C 1.39532 * 120.55192 * 179.97438 * 10 8 7 12 12 C 1.38764 * 118.26219 * 180.02562 * 11 10 8 13 13 N 1.32205 * 119.14958 * 359.97438 * 12 11 10 14 14 C 1.31883 * 121.03226 * 0.02562 * 13 12 11 15 15 N 1.31581 * 121.92057 * 359.70980 * 14 13 12 16 16 C 1.46899 * 111.00032 * 199.97863 * 3 2 1 17 17 C 1.50698 * 109.46805 * 66.05064 * 16 3 2 18 18 O 1.21288 * 120.00410 * 359.97438 * 17 16 3 19 19 N 1.34774 * 119.99749 * 179.97438 * 17 16 3 20 20 C 1.37101 * 119.99990 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99959 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99955 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99962 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99714 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47016 * 60.00376 * 24 22 20 26 26 H 1.48501 * 109.46787 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47450 * 300.00057 * 24 22 20 28 28 H 1.09001 * 109.47886 * 174.86647 * 1 2 3 29 29 H 1.08999 * 109.47523 * 294.86946 * 1 2 3 30 30 H 1.09006 * 109.46974 * 54.86954 * 1 2 3 31 31 H 1.09009 * 109.46923 * 239.99793 * 2 1 3 32 32 H 1.09003 * 109.47122 * 120.00611 * 2 1 3 33 33 H 1.09000 * 109.47103 * 79.55149 * 4 3 2 34 34 H 1.08992 * 109.47141 * 319.54624 * 4 3 2 35 35 H 1.08996 * 109.47434 * 54.89815 * 5 4 3 36 36 H 1.09000 * 109.47508 * 294.89391 * 5 4 3 37 37 H 1.08996 * 109.47503 * 60.00554 * 6 5 4 38 38 H 1.08997 * 109.47105 * 299.99615 * 6 5 4 39 39 H 0.97002 * 119.99606 * 359.97438 * 7 6 5 40 40 H 1.07996 * 120.86787 * 0.02562 * 11 10 8 41 41 H 1.07993 * 120.42331 * 180.02562 * 12 11 10 42 42 H 1.08004 * 119.03591 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.46830 * 186.04671 * 16 3 2 44 44 H 1.08990 * 109.47261 * 306.04952 * 16 3 2 45 45 H 0.97003 * 120.00166 * 359.97438 * 19 17 16 46 46 H 0.96997 * 119.99781 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8829 1.9916 1.3310 5 6 1.9280 3.5156 1.2037 6 6 1.6586 4.1495 2.5699 7 7 1.7011 5.6089 2.4481 8 6 1.4913 6.3820 3.5319 9 8 1.2717 5.8688 4.6107 10 6 1.5338 7.8608 3.4083 11 6 1.3176 8.6722 4.5227 12 6 1.3677 10.0485 4.3530 13 7 1.6169 10.5406 3.1515 14 6 1.8166 9.7448 2.1190 15 7 1.7837 8.4345 2.2338 16 6 3.4104 1.4515 -0.4686 17 6 3.4712 1.0498 -1.9197 18 8 2.4561 0.7382 -2.5059 19 7 4.6536 1.0368 -2.5663 20 6 4.7091 0.6709 -3.8864 21 1 3.8053 0.3926 -4.4081 22 6 5.9283 0.6569 -4.5529 23 7 7.0280 0.9950 -3.9180 24 14 6.0039 0.1576 -6.3514 25 1 5.1651 1.0809 -7.1571 26 1 7.4096 0.2258 -6.8253 27 1 5.4970 -1.2301 -6.5016 28 1 -0.3635 -1.0235 -0.0919 29 1 -0.3634 0.4322 0.9323 30 1 -0.3633 0.5914 -0.8405 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7005 1.6559 1.9690 34 1 0.9320 1.6916 1.7710 35 1 1.1678 3.8436 0.4948 36 1 2.9121 3.8217 0.8488 37 1 2.4188 3.8216 3.2789 38 1 0.6745 3.8435 2.9248 39 1 1.8810 6.0186 1.5874 40 1 1.1167 8.2403 5.4919 41 1 1.2060 10.7091 5.1919 42 1 2.0181 10.1815 1.1519 43 1 3.7827 2.4700 -0.3576 44 1 4.0257 0.7732 0.1223 45 1 5.4655 1.2864 -2.0977 46 1 7.8791 0.9850 -4.3832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266094806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:55 Heat of formation + Delta-G solvation = -17.827695 kcal Electronic energy + Delta-G solvation = -27500.035154 eV Core-core repulsion = 23425.101105 eV Total energy + Delta-G solvation = -4074.934050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64919 -39.72875 -38.79565 -37.01232 -35.51910 -34.39735 -33.84620 -32.60096 -31.98914 -31.27888 -30.24282 -27.45613 -26.11501 -24.98277 -24.60449 -23.86594 -21.86599 -21.46394 -20.68439 -19.14836 -18.76427 -18.10726 -17.85463 -16.47086 -16.19777 -16.03017 -15.96180 -15.80381 -15.47272 -14.97935 -14.84176 -14.59693 -14.22752 -14.21091 -14.07392 -13.95882 -13.68741 -13.38326 -12.75653 -12.22252 -12.12375 -11.92662 -11.71168 -11.49409 -11.49289 -11.35242 -11.31891 -11.21469 -11.08391 -10.83114 -10.58918 -10.45047 -10.41209 -10.28499 -10.20765 -9.83193 -9.45151 -9.41592 -8.40210 -7.96913 -7.87772 -6.41135 -3.81851 -0.00434 0.39708 2.33899 2.56796 3.20104 3.25803 3.30065 3.34768 3.42883 3.61868 3.90695 3.96417 4.08709 4.23383 4.34937 4.50144 4.78669 4.90148 4.98431 5.00656 5.10969 5.17877 5.25021 5.32703 5.45099 5.49464 5.58271 5.66361 5.72753 5.83834 5.89390 5.91121 5.95973 6.04412 6.07602 6.21035 6.28228 6.30164 6.49617 6.58972 7.06985 7.32435 7.42605 7.44021 7.55479 7.72112 8.06982 8.62659 9.18805 9.55447 10.07393 10.76588 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.002048 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.782604 B =13666.315215 C =15447.477136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.118 3.882 7 N -0.702 5.702 8 C 0.568 3.432 9 O -0.527 6.527 10 C 0.132 3.868 11 C -0.170 4.170 12 C 0.150 3.850 13 N -0.507 5.507 14 C 0.297 3.703 15 N -0.495 5.495 16 C 0.043 3.957 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.022 0.978 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.415 0.585 40 H 0.161 0.839 41 H 0.178 0.822 42 H 0.205 0.795 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 13.791 17.594 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.239 5.239 4 C -0.071 4.071 5 C -0.168 4.168 6 C -0.005 4.005 7 N -0.353 5.353 8 C 0.351 3.649 9 O -0.402 6.402 10 C -0.016 4.016 11 C -0.193 4.193 12 C -0.017 4.017 13 N -0.221 5.221 14 C 0.009 3.991 15 N -0.212 5.212 16 C -0.088 4.088 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.251 0.749 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.221 0.779 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.831 13.790 16.660 23.756 hybrid contribution 1.179 -0.575 0.320 1.350 sum -8.652 13.215 16.980 23.191 Atomic orbital electron populations 1.21683 0.95335 1.01004 1.01549 1.22152 0.95979 0.88242 1.01221 1.61571 1.19671 1.19328 1.23367 1.21998 1.01280 0.93457 0.90332 1.21799 1.03665 0.95695 0.95594 1.21472 1.02569 0.77948 0.98524 1.45881 1.70075 1.07386 1.11961 1.17788 0.77838 0.84743 0.84553 1.90809 1.48779 1.73682 1.26921 1.21670 0.94726 0.95237 0.89941 1.23013 0.99446 0.95398 1.01465 1.23403 0.90092 0.92973 0.95234 1.68398 1.11651 1.41654 1.00429 1.25076 0.90877 0.84891 0.98305 1.68375 1.12612 1.14599 1.25611 1.21904 0.89267 1.01746 0.95869 1.19751 0.84524 0.84869 0.87990 1.90506 1.34105 1.53133 1.68239 1.41877 1.07475 1.59517 1.11354 1.19638 0.95090 1.41969 0.86087 0.87990 1.25256 0.94818 0.97530 1.00378 1.69602 0.98722 1.48448 1.37626 0.85927 0.77029 0.79262 0.82054 1.19900 1.21015 1.19951 0.92957 0.93850 0.91495 0.88674 0.96020 0.94625 0.90483 0.89877 0.90957 0.91034 0.90912 0.74880 0.82097 0.80535 0.77860 0.89431 0.93570 0.77545 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.96 37.15 0.37 -1.54 16 2 C 0.05 0.82 5.18 -3.83 -0.02 0.80 16 3 N -0.52 -8.15 4.10 -236.07 -0.97 -9.12 16 4 C 0.06 0.69 4.81 -3.82 -0.02 0.67 16 5 C -0.13 -1.34 5.36 -26.73 -0.14 -1.49 16 6 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 7 N -0.70 -6.82 5.55 -61.05 -0.34 -7.16 16 8 C 0.57 6.18 7.83 -12.05 -0.09 6.09 16 9 O -0.53 -7.00 16.43 5.39 0.09 -6.91 16 10 C 0.13 1.24 6.79 -82.64 -0.56 0.68 16 11 C -0.17 -1.24 9.72 -38.90 -0.38 -1.62 16 12 C 0.15 0.91 11.31 -17.20 -0.19 0.72 16 13 N -0.51 -3.94 10.42 -14.60 -0.15 -4.09 16 14 C 0.30 2.24 12.27 -92.26 -1.13 1.10 16 15 N -0.50 -4.45 9.70 -11.14 -0.11 -4.56 16 16 C 0.04 0.75 5.28 -4.98 -0.03 0.73 16 17 C 0.44 10.23 7.29 -10.99 -0.08 10.15 16 18 O -0.58 -15.15 14.12 5.55 0.08 -15.07 16 19 N -0.57 -14.14 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 24 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.51 6.91 -51.93 -0.36 0.15 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.85 5.85 -51.92 -0.30 1.55 16 32 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 33 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 34 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.77 6.95 -51.93 -0.36 0.41 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.41 3.67 7.86 -40.82 -0.32 3.35 16 40 H 0.16 0.98 7.74 -52.49 -0.41 0.57 16 41 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.21 0.92 8.06 -52.48 -0.42 0.49 16 43 H 0.09 1.37 6.71 -51.93 -0.35 1.02 16 44 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -33.45 389.09 -8.92 -42.37 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.48 Total: 11.11 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.54 Total: 9.51 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.90 Total: -62.81 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.45 -8.92 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266094806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.545 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds