Wall clock time and date at job start Tue Mar 31 2020 20:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47549 * 2 1 4 4 C 1.46908 * 110.99328 * 76.02643 * 3 2 1 5 5 C 1.52999 * 109.46393 * 199.54518 * 4 3 2 6 6 C 1.53004 * 109.46645 * 174.89534 * 5 4 3 7 7 N 1.46505 * 109.47096 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00231 * 180.02562 * 7 6 5 9 9 O 1.21476 * 119.99597 * 0.26742 * 8 7 6 10 10 C 1.48452 * 120.00383 * 180.02562 * 8 7 6 11 11 C 1.39532 * 120.55192 * 179.97438 * 10 8 7 12 12 C 1.38764 * 118.26219 * 180.02562 * 11 10 8 13 13 N 1.32205 * 119.14958 * 359.97438 * 12 11 10 14 14 C 1.31883 * 121.03226 * 0.02562 * 13 12 11 15 15 N 1.31581 * 121.92057 * 359.70980 * 14 13 12 16 16 C 1.46899 * 111.00032 * 199.97863 * 3 2 1 17 17 C 1.50698 * 109.46805 * 66.05064 * 16 3 2 18 18 O 1.21288 * 120.00410 * 359.97438 * 17 16 3 19 19 N 1.34774 * 119.99749 * 179.97438 * 17 16 3 20 20 C 1.37101 * 119.99990 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99959 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99955 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99962 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99714 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47016 * 60.00376 * 24 22 20 26 26 H 1.48501 * 109.46787 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47450 * 300.00057 * 24 22 20 28 28 H 1.09001 * 109.47886 * 174.86647 * 1 2 3 29 29 H 1.08999 * 109.47523 * 294.86946 * 1 2 3 30 30 H 1.09006 * 109.46974 * 54.86954 * 1 2 3 31 31 H 1.09009 * 109.46923 * 239.99793 * 2 1 3 32 32 H 1.09003 * 109.47122 * 120.00611 * 2 1 3 33 33 H 1.09000 * 109.47103 * 79.55149 * 4 3 2 34 34 H 1.08992 * 109.47141 * 319.54624 * 4 3 2 35 35 H 1.08996 * 109.47434 * 54.89815 * 5 4 3 36 36 H 1.09000 * 109.47508 * 294.89391 * 5 4 3 37 37 H 1.08996 * 109.47503 * 60.00554 * 6 5 4 38 38 H 1.08997 * 109.47105 * 299.99615 * 6 5 4 39 39 H 0.97002 * 119.99606 * 359.97438 * 7 6 5 40 40 H 1.07996 * 120.86787 * 0.02562 * 11 10 8 41 41 H 1.07993 * 120.42331 * 180.02562 * 12 11 10 42 42 H 1.08004 * 119.03591 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.46830 * 186.04671 * 16 3 2 44 44 H 1.08990 * 109.47261 * 306.04952 * 16 3 2 45 45 H 0.97003 * 120.00166 * 359.97438 * 19 17 16 46 46 H 0.96997 * 119.99781 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8829 1.9916 1.3310 5 6 1.9280 3.5156 1.2037 6 6 1.6586 4.1495 2.5699 7 7 1.7011 5.6089 2.4481 8 6 1.4913 6.3820 3.5319 9 8 1.2717 5.8688 4.6107 10 6 1.5338 7.8608 3.4083 11 6 1.3176 8.6722 4.5227 12 6 1.3677 10.0485 4.3530 13 7 1.6169 10.5406 3.1515 14 6 1.8166 9.7448 2.1190 15 7 1.7837 8.4345 2.2338 16 6 3.4104 1.4515 -0.4686 17 6 3.4712 1.0498 -1.9197 18 8 2.4561 0.7382 -2.5059 19 7 4.6536 1.0368 -2.5663 20 6 4.7091 0.6709 -3.8864 21 1 3.8053 0.3926 -4.4081 22 6 5.9283 0.6569 -4.5529 23 7 7.0280 0.9950 -3.9180 24 14 6.0039 0.1576 -6.3514 25 1 5.1651 1.0809 -7.1571 26 1 7.4096 0.2258 -6.8253 27 1 5.4970 -1.2301 -6.5016 28 1 -0.3635 -1.0235 -0.0919 29 1 -0.3634 0.4322 0.9323 30 1 -0.3633 0.5914 -0.8405 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7005 1.6559 1.9690 34 1 0.9320 1.6916 1.7710 35 1 1.1678 3.8436 0.4948 36 1 2.9121 3.8217 0.8488 37 1 2.4188 3.8216 3.2789 38 1 0.6745 3.8435 2.9248 39 1 1.8810 6.0186 1.5874 40 1 1.1167 8.2403 5.4919 41 1 1.2060 10.7091 5.1919 42 1 2.0181 10.1815 1.1519 43 1 3.7827 2.4700 -0.3576 44 1 4.0257 0.7732 0.1223 45 1 5.4655 1.2864 -2.0977 46 1 7.8791 0.9850 -4.3832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266094806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:53 Heat of formation + Delta-G solvation = -42.772369 kcal Electronic energy + Delta-G solvation = -27501.116837 eV Core-core repulsion = 23425.101105 eV Total energy + Delta-G solvation = -4076.015732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24517 -40.58278 -40.35836 -38.40991 -36.48192 -35.81747 -34.99174 -33.29418 -33.18165 -32.89163 -31.52085 -28.67984 -27.20204 -26.14684 -25.46454 -25.00052 -22.83238 -22.30812 -21.84863 -20.84593 -19.83968 -19.47946 -18.69452 -17.92367 -17.07798 -16.93986 -16.72120 -16.62286 -16.47698 -16.31149 -16.13360 -15.89047 -15.57120 -15.38747 -15.19181 -14.93522 -14.69471 -14.54226 -14.09087 -13.66936 -13.40950 -13.33299 -13.01164 -12.86205 -12.76001 -12.42092 -12.40712 -12.29379 -12.12074 -12.04334 -11.95177 -11.86977 -11.62585 -11.52904 -11.37581 -10.85061 -10.43985 -10.23703 -10.20138 -9.97152 -9.16954 -8.44517 -5.92711 -0.63701 -0.11334 1.40328 1.41900 1.52627 1.59140 1.83051 2.09162 2.29718 2.75320 2.75444 2.86398 3.17070 3.22563 3.40092 3.51155 3.75928 3.90588 4.00597 4.04159 4.18005 4.25736 4.31366 4.44014 4.51312 4.52885 4.56871 4.58909 4.63955 4.70277 4.73942 4.77376 4.95979 5.13412 5.17595 5.23266 5.24941 5.34983 5.42529 5.43002 5.70927 5.93771 6.13791 6.28718 6.31067 6.63498 6.85003 6.96192 7.15625 7.59903 8.15988 8.72725 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.002048 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.782604 B =13666.315215 C =15447.477136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.059 3.941 5 C -0.118 4.118 6 C 0.125 3.875 7 N -0.698 5.698 8 C 0.566 3.434 9 O -0.556 6.556 10 C 0.110 3.890 11 C -0.169 4.169 12 C 0.158 3.842 13 N -0.520 5.520 14 C 0.290 3.710 15 N -0.510 5.510 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.418 0.582 40 H 0.171 0.829 41 H 0.215 0.785 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 14.865 18.879 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.257 5.257 4 C -0.068 4.068 5 C -0.157 4.157 6 C 0.002 3.998 7 N -0.349 5.349 8 C 0.350 3.650 9 O -0.434 6.434 10 C -0.037 4.037 11 C -0.192 4.192 12 C -0.009 4.009 13 N -0.234 5.234 14 C 0.002 3.998 15 N -0.227 5.227 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.256 0.744 40 H 0.189 0.811 41 H 0.231 0.769 42 H 0.244 0.756 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.852 14.869 17.950 25.305 hybrid contribution 1.133 -0.868 -0.022 1.427 sum -8.719 14.001 17.928 24.361 Atomic orbital electron populations 1.21619 0.93851 1.01544 1.01805 1.22086 0.97229 0.88275 1.00047 1.61549 1.18505 1.19537 1.26079 1.22084 1.02643 0.93792 0.88326 1.21662 1.03262 0.94916 0.95824 1.21382 1.02736 0.77833 0.97859 1.45884 1.69498 1.07489 1.12001 1.18035 0.77190 0.85541 0.84204 1.90782 1.50346 1.74408 1.27859 1.21604 0.96398 0.94615 0.91033 1.23208 0.98880 0.95869 1.01276 1.24015 0.88248 0.92930 0.95697 1.68485 1.12029 1.41851 1.01072 1.25588 0.90322 0.84485 0.99363 1.68355 1.13382 1.15355 1.25621 1.21769 0.90972 1.03075 0.91697 1.20798 0.83276 0.82873 0.90148 1.90481 1.35239 1.54156 1.69851 1.41951 1.08312 1.60310 1.10879 1.19599 0.94830 1.43908 0.87620 0.90350 1.26017 0.94155 0.97030 1.04207 1.69666 0.99058 1.48521 1.39029 0.85014 0.77538 0.78765 0.77182 1.19740 1.19592 1.19774 0.91853 0.91288 0.93905 0.92967 0.93918 0.93151 0.89021 0.90760 0.91119 0.90832 0.90714 0.74433 0.81115 0.76893 0.75603 0.87331 0.91816 0.77139 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.96 71.98 0.72 -2.76 16 2 C 0.05 1.59 5.18 86.30 0.45 2.04 16 3 N -0.53 -16.21 4.10 -900.80 -3.70 -19.91 16 4 C 0.06 1.26 4.81 86.30 0.41 1.68 16 5 C -0.12 -2.26 5.36 30.60 0.16 -2.10 16 6 C 0.13 2.20 5.67 86.38 0.49 2.69 16 7 N -0.70 -13.00 5.55 -465.38 -2.58 -15.58 16 8 C 0.57 12.04 7.83 86.97 0.68 12.72 16 9 O -0.56 -14.52 16.43 -3.64 -0.06 -14.58 16 10 C 0.11 2.00 6.79 41.99 0.29 2.28 16 11 C -0.17 -2.25 9.72 22.71 0.22 -2.03 16 12 C 0.16 1.58 11.31 84.76 0.96 2.54 16 13 N -0.52 -7.16 10.42 -200.09 -2.09 -9.24 16 14 C 0.29 4.01 12.27 180.92 2.22 6.24 16 15 N -0.51 -8.78 9.70 -189.15 -1.84 -10.61 16 16 C 0.06 1.89 5.28 85.56 0.45 2.34 16 17 C 0.44 20.77 7.29 87.66 0.64 21.41 16 18 O -0.61 -33.28 14.12 -3.05 -0.04 -33.32 16 19 N -0.58 -29.47 5.29 -306.99 -1.62 -31.09 16 20 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 24 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.46 6.91 -2.39 -0.02 1.45 16 30 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.05 2.08 5.85 -2.38 -0.01 2.06 16 32 H 0.04 1.13 8.00 -2.39 -0.02 1.11 16 33 H 0.05 0.96 8.00 -2.39 -0.02 0.94 16 34 H 0.09 1.71 6.58 -2.39 -0.02 1.69 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.39 6.95 -2.39 -0.02 1.37 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 7.15 7.86 -92.71 -0.73 6.42 16 40 H 0.17 1.85 7.74 -2.91 -0.02 1.83 16 41 H 0.21 0.36 8.06 -2.91 -0.02 0.34 16 42 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.11 3.21 6.71 -2.39 -0.02 3.20 16 44 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 45 H 0.39 19.22 7.90 -92.71 -0.73 18.48 16 46 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -73.76 389.09 -1.08 -74.84 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.43 Total: 35.08 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 8.97 Total: 28.87 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -11.54 Total: -135.94 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.10 Total: -47.90 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -73.76 -1.08 -74.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266094806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.065 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds