Wall clock time and date at job start Tue Mar 31 2020 18:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46888 * 2 1 4 4 N 1.28450 * 125.19148 * 271.90603 * 3 2 1 5 5 C 1.30863 * 110.92540 * 180.28113 * 4 3 2 6 6 C 1.39678 * 107.86165 * 359.71561 * 5 4 3 7 7 C 1.36596 * 125.19002 * 91.69704 * 3 2 1 8 8 C 1.47169 * 126.88434 * 359.97438 * 7 3 2 9 9 O 1.21632 * 119.99873 * 352.68195 * 8 7 3 10 10 N 1.34767 * 120.00099 * 172.68422 * 8 7 3 11 11 C 1.46501 * 120.00207 * 184.77947 * 10 8 7 12 12 H 1.08999 * 110.64321 * 323.30283 * 11 10 8 13 13 C 1.54602 * 110.72287 * 86.45007 * 11 10 8 14 14 C 1.53995 * 105.13707 * 140.49634 * 13 11 10 15 15 N 1.47898 * 107.06068 * 1.22471 * 14 13 11 16 16 C 1.46898 * 111.00096 * 214.15749 * 15 14 13 17 17 C 1.50706 * 109.47188 * 176.63693 * 16 15 14 18 18 O 1.21297 * 119.99611 * 6.23739 * 17 16 15 19 19 N 1.34773 * 120.00233 * 186.23481 * 17 16 15 20 20 C 1.37100 * 120.00239 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99654 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00167 * 179.72673 * 20 19 17 23 23 N 1.31413 * 119.99846 * 0.26912 * 22 20 19 24 24 Si 1.86790 * 119.99932 * 180.27613 * 22 20 19 25 25 H 1.48498 * 109.47345 * 89.99909 * 24 22 20 26 26 H 1.48502 * 109.47172 * 209.99678 * 24 22 20 27 27 H 1.48497 * 109.47374 * 329.99599 * 24 22 20 28 28 C 1.48538 * 105.82142 * 334.67057 * 15 14 13 29 29 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47216 * 300.00165 * 1 2 3 31 31 H 1.09000 * 109.47330 * 59.99990 * 1 2 3 32 32 H 1.09002 * 109.47443 * 240.00491 * 2 1 3 33 33 H 1.08994 * 109.46984 * 119.99753 * 2 1 3 34 34 H 1.07997 * 126.06804 * 179.67584 * 5 4 3 35 35 H 1.08002 * 127.32035 * 179.97438 * 6 5 4 36 36 H 0.97003 * 119.99966 * 4.78014 * 10 8 7 37 37 H 1.09007 * 110.30469 * 21.58386 * 13 11 10 38 38 H 1.08994 * 110.39286 * 259.45753 * 13 11 10 39 39 H 1.09002 * 109.91681 * 241.87098 * 14 13 11 40 40 H 1.08995 * 109.91496 * 120.58387 * 14 13 11 41 41 H 1.08995 * 109.47619 * 56.63801 * 16 15 14 42 42 H 1.09005 * 109.46997 * 296.62993 * 16 15 14 43 43 H 0.97000 * 119.99700 * 359.97438 * 19 17 16 44 44 H 0.96997 * 119.99851 * 179.97438 * 23 22 20 45 45 H 1.08999 * 110.66675 * 157.63588 * 28 15 14 46 46 H 1.08999 * 110.66746 * 280.77191 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2321 2.0909 -1.0492 5 6 2.6706 3.2811 -0.7271 6 6 2.7413 3.3490 0.6663 7 6 2.3118 2.1125 1.1158 8 6 2.1995 1.6718 2.5155 9 8 1.6861 0.6004 2.7764 10 7 2.6654 2.4552 3.5081 11 6 2.6492 1.9725 4.8912 12 1 1.7562 1.3768 5.0799 13 6 3.9260 1.1577 5.2012 14 6 4.3225 1.5609 6.6336 15 7 3.3064 2.5240 7.1102 16 6 3.9095 3.5325 7.9918 17 6 2.8635 4.5416 8.3902 18 8 1.7049 4.3710 8.0744 19 7 3.2154 5.6336 9.0975 20 6 2.2639 6.5519 9.4595 21 1 1.2324 6.4004 9.1775 22 6 2.6258 7.6748 10.1935 23 7 3.8809 7.8593 10.5362 24 14 1.3281 8.9219 10.6933 25 1 0.7635 8.5465 12.0144 26 1 1.9455 10.2695 10.7837 27 1 0.2437 8.9415 9.6790 28 6 2.7413 3.1539 5.8895 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9320 4.0704 -1.4162 35 1 3.0632 4.1879 1.2654 36 1 3.0115 3.3388 3.3068 37 1 4.7201 1.4180 4.5014 38 1 3.7156 0.0893 5.1535 39 1 5.3060 2.0309 6.6282 40 1 4.3318 0.6817 7.2777 41 1 4.7196 4.0374 7.4657 42 1 4.3034 3.0460 8.8842 43 1 4.1419 5.7697 9.3504 44 1 4.1336 8.6433 11.0483 45 1 1.7521 3.5649 6.0913 46 1 3.4102 3.9266 5.5104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266317937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:59 Heat of formation + Delta-G solvation = -6.101044 kcal Electronic energy + Delta-G solvation = -28511.487030 eV Core-core repulsion = 24437.061486 eV Total energy + Delta-G solvation = -4074.425544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.55662 -41.11379 -40.23782 -38.91759 -36.10758 -35.80844 -35.15569 -33.31100 -32.70762 -31.48464 -30.75235 -29.47258 -28.13482 -26.05427 -25.18558 -24.22964 -22.78632 -22.44854 -21.45148 -21.10939 -20.82123 -19.85127 -19.12132 -17.91500 -17.57490 -17.18924 -16.89595 -16.71037 -16.46497 -16.04478 -15.90456 -15.67653 -15.57173 -15.37349 -14.84788 -14.78341 -14.63159 -14.19627 -13.98887 -13.83393 -13.56083 -13.53530 -13.18996 -13.04070 -12.95502 -12.84248 -12.49170 -12.39999 -12.31803 -12.29299 -12.10532 -11.85917 -11.71665 -11.45928 -11.22245 -10.43324 -10.25638 -10.11660 -10.02819 -9.98565 -9.33879 -8.45508 -5.93546 0.17346 1.31379 1.38500 1.42885 1.54846 1.62218 2.03885 2.06565 2.09242 2.29668 2.87311 3.21864 3.33231 3.44847 3.54743 3.62102 3.76894 3.98732 4.05799 4.06698 4.17168 4.25399 4.27723 4.31822 4.35563 4.45631 4.56257 4.58582 4.66423 4.71574 4.80868 4.85317 4.89035 4.93827 5.06768 5.09277 5.15723 5.32165 5.42774 5.52899 5.72547 5.82753 5.94088 6.09652 6.31594 6.62184 6.95086 7.06624 7.14751 7.58109 8.13909 8.71835 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.002230 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.370431 B =12551.694237 C =13354.180019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.263 5.263 4 N -0.298 5.298 5 C -0.007 4.007 6 C -0.180 4.180 7 C -0.060 4.060 8 C 0.593 3.407 9 O -0.565 6.565 10 N -0.693 5.693 11 C 0.151 3.849 12 H 0.082 0.918 13 C -0.129 4.129 14 C 0.038 3.962 15 N -0.514 5.514 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.615 6.615 19 N -0.573 5.573 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.042 3.958 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.217 0.783 35 H 0.187 0.813 36 H 0.415 0.585 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.073 0.927 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -11.883 -19.868 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 N -0.052 5.052 4 N -0.131 5.131 5 C -0.182 4.182 6 C -0.209 4.209 7 C -0.188 4.188 8 C 0.380 3.620 9 O -0.445 6.445 10 N -0.345 5.345 11 C 0.046 3.954 12 H 0.100 0.900 13 C -0.168 4.168 14 C -0.090 4.090 15 N -0.239 5.239 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.501 6.501 19 N -0.211 5.211 20 C -0.459 4.459 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.086 4.086 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.233 0.767 35 H 0.204 0.796 36 H 0.253 0.747 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.829 -13.704 -20.362 24.707 hybrid contribution 0.688 2.161 0.872 2.429 sum 3.517 -11.544 -19.490 22.924 Atomic orbital electron populations 1.22021 0.93044 1.04530 1.01804 1.22287 0.96609 0.76041 1.06063 1.46073 1.44672 1.12899 1.01546 1.73194 1.18960 1.06702 1.14197 1.24173 1.03236 0.95117 0.95629 1.22697 1.05309 0.96831 0.96083 1.21456 1.12661 0.95377 0.89286 1.17047 0.77494 0.83857 0.83631 1.90776 1.45289 1.23794 1.84596 1.45508 1.63239 1.19928 1.05832 1.21721 0.99577 0.95105 0.79013 0.89956 1.22747 0.96787 1.00942 0.96327 1.22985 0.93977 0.96664 0.95363 1.64423 1.30579 1.14543 1.14335 1.21988 0.94175 0.92424 0.99508 1.20747 0.90239 0.83698 0.82638 1.90487 1.21927 1.78014 1.59698 1.41927 1.10853 1.19597 1.48681 1.19625 0.91640 1.01586 1.33079 0.90370 1.25993 0.99019 0.99672 0.96542 1.69665 1.17217 1.30230 1.38971 0.84967 0.77760 0.77309 0.78564 1.19864 1.19565 1.19784 1.23304 1.01392 0.94971 0.88955 0.87998 0.93829 0.92006 0.86623 0.87576 0.76682 0.79564 0.74711 0.89473 0.90181 0.91526 0.89089 0.90702 0.86947 0.76979 0.91344 0.90909 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.24 71.98 0.74 -1.84 16 2 C 0.11 1.91 6.49 86.38 0.56 2.47 16 3 N -0.26 -5.63 3.35 -334.67 -1.12 -6.75 16 4 N -0.30 -6.28 11.90 -57.14 -0.68 -6.96 16 5 C -0.01 -0.11 12.03 85.19 1.02 0.92 16 6 C -0.18 -2.97 10.50 22.66 0.24 -2.73 16 7 C -0.06 -1.28 6.95 40.79 0.28 -0.99 16 8 C 0.59 14.21 7.77 86.59 0.67 14.88 16 9 O -0.57 -16.47 14.46 -4.13 -0.06 -16.53 16 10 N -0.69 -14.48 5.14 -440.34 -2.26 -16.74 16 11 C 0.15 3.75 3.38 46.20 0.16 3.91 16 12 H 0.08 2.47 7.63 -2.39 -0.02 2.45 16 13 C -0.13 -2.60 6.67 31.48 0.21 -2.39 16 14 C 0.04 0.81 6.70 86.45 0.58 1.38 16 15 N -0.51 -15.69 5.11 -887.56 -4.53 -20.22 16 16 C 0.05 1.63 5.30 85.56 0.45 2.09 16 17 C 0.44 20.08 7.41 87.66 0.65 20.73 16 18 O -0.62 -32.89 13.88 -3.08 -0.04 -32.93 16 19 N -0.57 -28.46 5.29 -306.98 -1.62 -30.09 16 20 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 24 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.04 1.27 5.20 86.65 0.45 1.72 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.11 2.04 6.39 -2.39 -0.02 2.02 16 34 H 0.22 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.19 1.91 7.60 -2.91 -0.02 1.89 16 36 H 0.42 6.66 7.58 -92.71 -0.70 5.96 16 37 H 0.09 1.48 8.05 -2.38 -0.02 1.46 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.19 7.68 -2.39 -0.02 1.17 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.06 7.98 -2.39 -0.02 2.04 16 42 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 43 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 44 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 45 H 0.07 2.82 6.43 -2.39 -0.02 2.81 16 46 H 0.06 1.49 7.89 -2.39 -0.02 1.47 16 Total: -1.00 -72.71 382.52 -1.13 -73.84 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -0.41 Total: 37.93 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 7.30 Total: 22.48 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -9.94 Total: -129.14 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.10 Total: -49.46 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -72.71 -1.13 -73.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266317937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.738 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds