Wall clock time and date at job start Tue Mar 31 2020 18:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46906 * 2 1 4 4 C 1.50702 * 109.46562 * 240.00859 * 2 1 3 5 5 O 1.21283 * 119.99738 * 272.43683 * 4 2 1 6 6 N 1.34775 * 120.00141 * 92.44407 * 4 2 1 7 7 C 1.47427 * 125.65020 * 4.81441 * 6 4 2 8 8 C 1.54905 * 104.83318 * 204.09216 * 7 6 4 9 9 C 1.55160 * 101.58142 * 322.98827 * 8 7 6 10 10 H 1.08998 * 110.72045 * 277.13737 * 9 8 7 11 11 N 1.46903 * 110.72125 * 154.04349 * 9 8 7 12 12 C 1.46894 * 110.99957 * 86.45192 * 11 9 8 13 13 C 1.50702 * 109.47225 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99696 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00261 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00066 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00025 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00011 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46774 * 120.00427 * 20 18 16 23 23 H 1.48497 * 109.47059 * 240.00587 * 20 18 16 24 24 C 1.47022 * 125.64774 * 184.49962 * 6 4 2 25 25 N 1.46491 * 109.47190 * 120.00943 * 2 1 3 26 26 C 1.34949 * 126.04224 * 34.99671 * 25 2 1 27 27 C 1.35317 * 107.74789 * 179.97438 * 26 25 2 28 28 C 1.39870 * 107.91722 * 359.97438 * 27 26 25 29 29 N 1.30835 * 108.20589 * 359.74567 * 28 27 26 30 30 H 1.08999 * 109.47074 * 294.50951 * 1 2 3 31 31 H 1.08999 * 109.47026 * 174.51029 * 1 2 3 32 32 H 1.08998 * 109.47414 * 54.51114 * 1 2 3 33 33 H 1.09002 * 110.35944 * 322.93010 * 7 6 4 34 34 H 1.08996 * 110.36804 * 85.14203 * 7 6 4 35 35 H 1.09002 * 111.00649 * 81.05729 * 8 7 6 36 36 H 1.09002 * 111.00575 * 204.87726 * 8 7 6 37 37 H 1.00898 * 110.99535 * 322.50019 * 11 9 8 38 38 H 1.09003 * 109.47423 * 299.99725 * 12 11 9 39 39 H 1.09000 * 109.47246 * 60.00245 * 12 11 9 40 40 H 0.96999 * 120.00032 * 359.97438 * 15 13 12 41 41 H 0.97002 * 120.00103 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.89071 * 298.39910 * 24 6 4 43 43 H 1.09010 * 109.88145 * 59.56330 * 24 6 4 44 44 H 1.07994 * 126.12490 * 359.95970 * 26 25 2 45 45 H 1.07997 * 126.03848 * 180.02562 * 27 26 25 46 46 H 1.08009 * 125.89089 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.1922 -1.9124 -1.2141 6 7 2.3037 -0.0096 -2.3495 7 6 2.2510 1.4581 -2.4782 8 6 2.0233 1.7158 -3.9886 9 6 2.8801 0.5919 -4.6290 10 1 3.9266 0.8910 -4.6880 11 7 2.3662 0.2408 -5.9597 12 6 2.9365 1.1163 -6.9921 13 6 2.3869 0.7273 -8.3404 14 8 1.5981 -0.1895 -8.4321 15 7 2.7726 1.3974 -9.4442 16 6 2.2730 1.0431 -10.6708 17 1 1.5701 0.2274 -10.7524 18 6 2.6703 1.7344 -11.8088 19 7 3.5252 2.7274 -11.7095 20 14 1.9890 1.2522 -13.4800 21 1 1.0510 0.1118 -13.3219 22 1 1.2680 2.4072 -14.0726 23 1 3.1061 0.8544 -14.3739 24 6 2.7078 -0.5820 -3.6420 25 7 2.0183 -0.6908 1.1960 26 6 1.4403 -1.7561 1.7892 27 6 2.1969 -2.0933 2.8592 28 6 3.2746 -1.2039 2.9216 29 7 3.1718 -0.3663 1.9218 30 1 -0.3633 0.4263 0.9351 31 1 -0.3633 -1.0229 -0.0983 32 1 -0.3634 0.5966 -0.8367 33 1 1.4223 1.8604 -1.8955 34 1 3.1924 1.9014 -2.1538 35 1 0.9712 1.6019 -4.2501 36 1 2.3910 2.7006 -4.2768 37 1 1.3578 0.2703 -5.9771 38 1 2.6718 2.1517 -6.7773 39 1 4.0215 1.0124 -6.9979 40 1 3.4037 2.1304 -9.3709 41 1 3.8029 3.2097 -12.5040 42 1 3.6507 -1.1177 -3.5318 43 1 1.9347 -1.2591 -4.0055 44 1 0.5357 -2.2508 1.4678 45 1 2.0033 -2.9061 3.5435 46 1 4.0585 -1.2101 3.6646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266509218.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:21 Heat of formation + Delta-G solvation = 24.492199 kcal Electronic energy + Delta-G solvation = -28023.969969 eV Core-core repulsion = 23950.871048 eV Total energy + Delta-G solvation = -4073.098921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62847 -40.32359 -38.58798 -37.79725 -35.05457 -34.72941 -33.84160 -31.32055 -30.86620 -30.33117 -29.90446 -29.06460 -26.47821 -25.18598 -23.95310 -23.41358 -21.64562 -21.26149 -20.79914 -19.52503 -19.34308 -18.02347 -17.84945 -17.62718 -16.52891 -16.07032 -15.81964 -15.45671 -14.97739 -14.83014 -14.58357 -14.48172 -14.12905 -13.87931 -13.73958 -13.71791 -13.33434 -13.25742 -13.08110 -12.89175 -12.72572 -12.63973 -12.38996 -12.23934 -12.11608 -11.72403 -11.52985 -11.46798 -11.11357 -11.06258 -10.97852 -10.44560 -10.37371 -10.26556 -9.65902 -9.56514 -9.00650 -8.84223 -8.55852 -8.17334 -8.01044 -6.46186 -3.87106 1.51465 1.89530 2.26148 2.62590 2.68158 3.13461 3.24573 3.31726 3.84274 3.84555 3.94711 4.04862 4.16089 4.27400 4.28238 4.47634 4.56490 4.69005 4.76502 4.90457 4.95282 5.00485 5.03656 5.10739 5.13341 5.21833 5.26085 5.38367 5.48891 5.53800 5.60509 5.65700 5.75505 5.77022 5.82114 5.87573 5.92925 6.20107 6.36727 6.66315 7.04964 7.08757 7.42030 7.49005 7.51521 7.70969 8.01699 8.55973 9.13486 9.49041 10.00047 10.71461 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.039723 B = 0.001714 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.703934 B =16331.803447 C =16467.696007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.120 0.880 4 C 0.519 3.481 5 O -0.522 6.522 6 N -0.613 5.613 7 C 0.097 3.903 8 C -0.168 4.168 9 C 0.081 3.919 10 H 0.096 0.904 11 N -0.657 5.657 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.583 6.583 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.116 3.884 25 N -0.361 5.361 26 C 0.077 3.923 27 C -0.278 4.278 28 C 0.050 3.950 29 N -0.299 5.299 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.354 0.646 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.171 0.829 45 H 0.148 0.852 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 0.812 27.171 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.138 0.862 4 C 0.304 3.696 5 O -0.397 6.397 6 N -0.348 5.348 7 C -0.027 4.027 8 C -0.208 4.208 9 C -0.031 4.031 10 H 0.114 0.886 11 N -0.289 5.289 12 C -0.080 4.080 13 C 0.224 3.776 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.007 4.007 25 N -0.144 5.144 26 C -0.068 4.068 27 C -0.307 4.307 28 C -0.137 4.137 29 N -0.119 5.119 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.174 0.826 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.188 0.812 45 H 0.166 0.834 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.817 0.169 26.180 26.332 hybrid contribution -0.591 0.478 -0.332 0.830 sum -3.409 0.647 25.848 26.080 Atomic orbital electron populations 1.22107 0.90087 1.04755 1.04716 1.21054 0.96521 0.97264 0.80953 0.86185 1.20306 0.78331 0.87515 0.83411 1.90768 1.51949 1.14138 1.82828 1.48447 1.67615 1.07860 1.10872 1.22409 1.02118 0.80299 0.97830 1.23613 1.01919 1.01066 0.94153 1.22607 0.99578 0.92053 0.88888 0.88570 1.59936 1.13687 1.54412 1.00857 1.21690 1.00415 0.94344 0.91576 1.19774 0.86464 0.86094 0.85232 1.90537 1.38091 1.31807 1.86294 1.41862 1.40930 1.31304 1.05806 1.19760 1.24254 1.16304 0.82615 0.87829 1.25269 0.96711 0.95898 1.00040 1.69616 1.32565 1.21311 1.30738 0.85795 0.78697 0.78550 0.81283 1.19201 1.20760 1.20705 1.21952 1.01561 0.96253 0.80901 1.48290 1.19694 1.24878 1.21518 1.22466 0.99859 0.90177 0.94308 1.21494 0.99402 1.06360 1.03477 1.23901 0.99073 0.93864 0.96871 1.77365 1.02010 1.24809 1.07750 0.89903 0.90521 0.89187 0.90457 0.90560 0.89954 0.89252 0.82568 0.93581 0.89402 0.77451 0.91888 0.90723 0.90006 0.81161 0.83418 0.79933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 8.69 37.16 0.32 -0.56 16 2 C 0.15 1.28 3.18 -69.08 -0.22 1.06 16 3 H 0.12 0.85 6.87 -51.93 -0.36 0.49 16 4 C 0.52 6.08 7.00 -10.99 -0.08 6.01 16 5 O -0.52 -8.30 16.78 5.56 0.09 -8.20 16 6 N -0.61 -6.26 3.33 -170.51 -0.57 -6.83 16 7 C 0.10 0.67 6.33 -2.53 -0.02 0.65 16 8 C -0.17 -1.32 6.63 -24.58 -0.16 -1.49 16 9 C 0.08 0.86 3.22 -65.87 -0.21 0.65 16 10 H 0.10 0.97 7.89 -51.93 -0.41 0.56 16 11 N -0.66 -9.62 5.92 -106.05 -0.63 -10.25 16 12 C 0.05 0.84 6.02 -4.98 -0.03 0.81 16 13 C 0.44 9.97 7.82 -10.99 -0.09 9.88 16 14 O -0.58 -15.46 15.78 5.54 0.09 -15.37 16 15 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 16 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 20 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.12 1.36 6.64 -3.06 -0.02 1.34 16 25 N -0.36 -3.86 3.31 -56.00 -0.19 -4.05 16 26 C 0.08 0.74 10.28 -17.22 -0.18 0.56 16 27 C -0.28 -2.49 10.80 -40.01 -0.43 -2.92 16 28 C 0.05 0.48 12.02 -17.37 -0.21 0.27 16 29 N -0.30 -3.57 12.58 30.63 0.39 -3.18 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.47 7.45 -51.93 -0.39 0.08 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.36 7.31 -51.93 -0.38 -0.02 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.67 7.82 -51.93 -0.41 0.27 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.35 5.35 8.00 -39.29 -0.31 5.04 16 38 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 39 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 40 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.09 8.03 -51.92 -0.42 0.68 16 44 H 0.17 1.20 7.42 -52.49 -0.39 0.81 16 45 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -35.83 387.93 -7.58 -43.41 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.69 Total: 11.75 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.56 Total: 8.40 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.33 Total: -61.56 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.58 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.83 -7.58 -43.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266509218.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.898 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds