Wall clock time and date at job start Tue Mar 31 2020 18:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46943 * 2 1 4 4 C 1.50702 * 109.46741 * 119.99455 * 2 1 3 5 5 O 1.21281 * 119.99678 * 92.82099 * 4 2 1 6 6 N 1.34775 * 119.99974 * 272.80780 * 4 2 1 7 7 C 1.47026 * 125.64423 * 174.75674 * 6 4 2 8 8 C 1.54329 * 107.26641 * 178.99143 * 7 6 4 9 9 C 1.55156 * 102.94262 * 337.80714 * 8 7 6 10 10 H 1.08994 * 111.00327 * 277.42434 * 9 8 7 11 11 N 1.46904 * 111.00056 * 153.61496 * 9 8 7 12 12 C 1.46897 * 111.00002 * 89.58274 * 11 9 8 13 13 C 1.50699 * 109.47335 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99982 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00131 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99576 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00568 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99478 * 179.97438 * 16 15 13 19 19 N 1.31418 * 120.00194 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00040 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47095 * 60.00260 * 20 18 16 22 22 H 1.48502 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47214 * 300.00378 * 20 18 16 24 24 C 1.47421 * 125.65152 * 354.81774 * 6 4 2 25 25 N 1.46497 * 109.46781 * 239.99510 * 2 1 3 26 26 C 1.34946 * 126.04229 * 324.71195 * 25 2 1 27 27 C 1.35313 * 107.74864 * 179.84263 * 26 25 2 28 28 C 1.39874 * 107.91679 * 0.42262 * 27 26 25 29 29 N 1.30830 * 108.20417 * 359.74321 * 28 27 26 30 30 H 1.08995 * 109.46871 * 65.38166 * 1 2 3 31 31 H 1.08995 * 109.47144 * 185.38669 * 1 2 3 32 32 H 1.09003 * 109.46586 * 305.38353 * 1 2 3 33 33 H 1.09001 * 109.88139 * 59.57538 * 7 6 4 34 34 H 1.08997 * 110.01109 * 298.47818 * 7 6 4 35 35 H 1.08998 * 110.71758 * 219.44115 * 8 7 6 36 36 H 1.08996 * 110.71903 * 96.17635 * 8 7 6 37 37 H 1.00904 * 111.00033 * 325.63154 * 11 9 8 38 38 H 1.08999 * 109.47373 * 299.99778 * 12 11 9 39 39 H 1.09004 * 109.47318 * 59.99885 * 12 11 9 40 40 H 0.97000 * 120.00047 * 359.97438 * 15 13 12 41 41 H 0.97000 * 119.99839 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.36624 * 85.23828 * 24 6 4 43 43 H 1.08999 * 110.36645 * 322.91851 * 24 6 4 44 44 H 1.08005 * 126.12114 * 0.02562 * 26 25 2 45 45 H 1.07991 * 126.04159 * 180.16785 * 27 26 25 46 46 H 1.07999 * 125.89419 * 179.75370 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2832 -1.8961 1.1863 6 7 2.2030 -0.0278 2.3801 7 6 2.5796 -0.6121 3.6757 8 6 2.6810 0.5474 4.6890 9 6 2.9089 1.7842 3.7803 10 1 3.9594 1.8786 3.5053 11 7 2.4251 3.0103 4.4288 12 6 3.4839 3.6324 5.2350 13 6 2.9518 4.8848 5.8827 14 8 1.8037 5.2258 5.6912 15 7 3.7518 5.6259 6.6748 16 6 3.2678 6.7655 7.2635 17 1 2.2455 7.0692 7.0930 18 6 4.0923 7.5293 8.0806 19 7 5.3362 7.1595 8.2885 20 14 3.4328 9.0816 8.8834 21 1 2.2823 8.7368 9.7568 22 1 4.5030 9.7102 9.6989 23 1 2.9890 10.0323 7.8324 24 6 2.0418 1.4280 2.5471 25 7 2.0183 -0.6907 -1.1961 26 6 1.4432 -1.7594 -1.7862 27 6 2.1963 -2.0927 -2.8599 28 6 3.2738 -1.2030 -2.9226 29 7 3.1682 -0.3623 -1.9257 30 1 -0.3633 0.4281 -0.9342 31 1 -0.3633 -1.0231 0.0965 32 1 -0.3632 0.5951 0.8379 33 1 3.5430 -1.1146 3.5897 34 1 1.8189 -1.3223 3.9998 35 1 3.5274 0.4004 5.3598 36 1 1.7538 0.6488 5.2530 37 1 1.6064 2.8244 4.9886 38 1 3.8107 2.9349 6.0061 39 1 4.3277 3.8861 4.5932 40 1 4.6698 5.3530 6.8282 41 1 5.9116 7.6925 8.8592 42 1 0.9968 1.6750 2.7340 43 1 2.4046 1.9536 1.6638 44 1 0.5415 -2.2574 -1.4615 45 1 2.0023 -2.9049 -3.5446 46 1 4.0575 -1.2090 -3.6657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266509219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:25 Heat of formation + Delta-G solvation = 24.153047 kcal Electronic energy + Delta-G solvation = -28112.601295 eV Core-core repulsion = 24039.487667 eV Total energy + Delta-G solvation = -4073.113628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59080 -40.32312 -38.59864 -37.80551 -34.94887 -34.79095 -33.84881 -31.35868 -31.09848 -30.25606 -29.66086 -29.06460 -26.27631 -25.47230 -24.04468 -23.26146 -21.45364 -21.18937 -20.97121 -19.54860 -19.32823 -18.00260 -17.82538 -17.52313 -16.67038 -16.33376 -15.63751 -15.34441 -14.98436 -14.77491 -14.58492 -14.34140 -14.09544 -13.82933 -13.79187 -13.70971 -13.58171 -13.16676 -13.07571 -12.90452 -12.71552 -12.68066 -12.44181 -12.17260 -12.02314 -11.70283 -11.54470 -11.48622 -11.08487 -11.03496 -10.91686 -10.48287 -10.44337 -10.26383 -9.62286 -9.55518 -9.04125 -8.80802 -8.57823 -8.21058 -8.02308 -6.46851 -3.88060 1.56246 1.95365 2.23443 2.66415 2.69070 3.16368 3.22892 3.26800 3.73937 3.83760 4.01706 4.11853 4.19764 4.32968 4.39553 4.44672 4.58386 4.73241 4.75911 4.94028 4.99895 5.03279 5.06360 5.10177 5.20583 5.30164 5.30715 5.43243 5.46136 5.51549 5.57357 5.62936 5.70195 5.78691 5.80247 5.85034 5.89397 6.18189 6.41203 6.70515 7.00081 7.06090 7.45264 7.47437 7.50087 7.68776 7.99899 8.54664 9.12038 9.47756 9.98512 10.70563 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.001831 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.871741 B =15286.383496 C =15544.711700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.125 0.875 4 C 0.521 3.479 5 O -0.528 6.528 6 N -0.612 5.612 7 C 0.113 3.887 8 C -0.166 4.166 9 C 0.079 3.921 10 H 0.096 0.904 11 N -0.655 5.655 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.584 6.584 15 N -0.561 5.561 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.102 3.898 25 N -0.360 5.360 26 C 0.076 3.924 27 C -0.279 4.279 28 C 0.049 3.951 29 N -0.296 5.296 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.354 0.646 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.273 0.727 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.170 0.830 45 H 0.147 0.853 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 -17.930 -15.859 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.143 0.857 4 C 0.307 3.693 5 O -0.403 6.403 6 N -0.347 5.347 7 C -0.010 4.010 8 C -0.206 4.206 9 C -0.033 4.033 10 H 0.114 0.886 11 N -0.287 5.287 12 C -0.081 4.081 13 C 0.224 3.776 14 O -0.469 6.469 15 N -0.198 5.198 16 C -0.431 4.431 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.021 4.021 25 N -0.142 5.142 26 C -0.070 4.070 27 C -0.308 4.308 28 C -0.138 4.138 29 N -0.116 5.116 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.175 0.825 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.863 -16.787 -15.785 23.777 hybrid contribution 0.145 -0.742 1.006 1.259 sum -5.719 -17.529 -14.779 23.630 Atomic orbital electron populations 1.22099 0.90019 1.04417 1.05043 1.21093 0.96572 0.97530 0.80767 0.85724 1.20324 0.78306 0.87235 0.83420 1.90748 1.50475 1.15293 1.83795 1.48429 1.68386 1.09157 1.08761 1.21882 1.00984 0.96198 0.81936 1.23480 1.03609 0.95570 0.97966 1.22717 0.99282 0.88001 0.93281 0.88562 1.59933 1.07814 1.23872 1.37081 1.21701 0.94614 0.95674 0.96108 1.19749 0.87278 0.86535 0.84025 1.90526 1.18528 1.72754 1.65068 1.41855 1.13373 1.22698 1.41846 1.19653 0.98944 0.99875 1.24620 0.87919 1.25277 0.95243 0.99742 0.97627 1.69603 1.05910 1.40081 1.38575 0.85908 0.78172 0.81001 0.79079 1.19900 1.20957 1.19844 1.22422 1.01338 0.78819 0.99494 1.48293 1.19962 1.24493 1.21474 1.22431 0.99830 0.90291 0.94414 1.21478 0.99494 1.06473 1.03342 1.23899 0.99075 0.93847 0.96984 1.77395 1.02050 1.24505 1.07688 0.89811 0.90832 0.88982 0.91187 0.91214 0.89550 0.89918 0.82517 0.93539 0.89390 0.77428 0.91752 0.89910 0.89736 0.81278 0.83490 0.79956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.70 37.16 0.32 -0.64 16 2 C 0.15 1.37 3.31 -69.08 -0.23 1.14 16 3 H 0.13 1.07 6.60 -51.93 -0.34 0.73 16 4 C 0.52 6.04 7.04 -10.98 -0.08 5.97 16 5 O -0.53 -8.02 16.71 5.56 0.09 -7.93 16 6 N -0.61 -6.16 3.33 -170.52 -0.57 -6.73 16 7 C 0.11 1.07 6.87 -3.06 -0.02 1.05 16 8 C -0.17 -1.46 6.56 -24.89 -0.16 -1.62 16 9 C 0.08 0.81 3.34 -65.57 -0.22 0.59 16 10 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 11 N -0.66 -8.95 6.02 -105.73 -0.64 -9.59 16 12 C 0.05 0.81 6.05 -4.98 -0.03 0.78 16 13 C 0.44 9.76 7.82 -10.98 -0.09 9.67 16 14 O -0.58 -15.05 15.78 5.55 0.09 -14.96 16 15 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 16 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 17 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 18 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 19 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 20 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.10 0.93 6.30 -2.53 -0.02 0.91 16 25 N -0.36 -4.04 3.26 -55.99 -0.18 -4.22 16 26 C 0.08 0.74 10.27 -17.23 -0.18 0.56 16 27 C -0.28 -2.58 10.80 -40.01 -0.43 -3.01 16 28 C 0.05 0.50 12.03 -17.37 -0.21 0.29 16 29 N -0.30 -3.76 12.58 30.62 0.39 -3.38 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 7.44 -51.93 -0.39 0.05 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.70 7.78 -51.93 -0.40 0.30 16 37 H 0.35 4.97 7.95 -39.29 -0.31 4.65 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 40 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.72 6.90 -51.93 -0.36 0.37 16 44 H 0.17 1.18 7.42 -52.48 -0.39 0.79 16 45 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -34.89 387.67 -7.57 -42.46 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.66 Total: 12.03 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.58 Total: 7.87 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.33 Total: -60.88 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.89 -7.57 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266509219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.610 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds