Wall clock time and date at job start Tue Mar 31 2020 18:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46975 * 2 1 4 4 N 1.39929 * 125.75605 * 269.97111 * 3 2 1 5 5 C 1.30456 * 108.89647 * 179.77284 * 4 3 2 6 6 C 1.41290 * 108.02031 * 0.39292 * 5 4 3 7 7 C 1.47435 * 126.41005 * 179.87749 * 6 5 4 8 8 O 1.21605 * 119.99727 * 179.68088 * 7 6 5 9 9 N 1.34773 * 120.00099 * 359.68464 * 7 6 5 10 10 C 1.46501 * 119.99945 * 179.97438 * 9 7 6 11 11 C 1.53513 * 114.17190 * 154.99653 * 10 9 7 12 12 N 1.47484 * 87.93060 * 87.62367 * 11 10 9 13 13 C 1.46895 * 110.99756 * 138.70311 * 12 11 10 14 14 C 1.50706 * 109.47182 * 170.00145 * 13 12 11 15 15 O 1.21297 * 119.99667 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46681 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47048 * 120.00010 * 21 19 17 24 24 H 1.48501 * 109.47100 * 240.00460 * 21 19 17 25 25 C 1.47477 * 87.83167 * 27.01125 * 12 11 10 26 26 C 1.34265 * 125.74994 * 90.00534 * 3 2 1 27 27 C 1.50694 * 126.29535 * 359.95212 * 26 3 2 28 28 H 1.09001 * 109.47092 * 59.99830 * 1 2 3 29 29 H 1.08993 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47022 * 299.99695 * 1 2 3 31 31 H 1.09002 * 109.47022 * 240.00305 * 2 1 3 32 32 H 1.09001 * 109.47092 * 120.00170 * 2 1 3 33 33 H 1.07997 * 125.98528 * 180.26026 * 5 4 3 34 34 H 0.96996 * 120.00344 * 359.97438 * 9 7 6 35 35 H 1.09001 * 113.38112 * 21.92527 * 10 9 7 36 36 H 1.09005 * 113.47855 * 332.86242 * 11 10 9 37 37 H 1.08997 * 113.53455 * 202.39823 * 11 10 9 38 38 H 1.09001 * 109.47613 * 50.00491 * 13 12 11 39 39 H 1.08998 * 109.47678 * 290.00386 * 13 12 11 40 40 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 41 41 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.48071 * 87.76093 * 25 12 11 43 43 H 1.09004 * 113.47566 * 218.21901 * 25 12 11 44 44 H 1.09002 * 109.46857 * 270.00807 * 27 26 3 45 45 H 1.09003 * 109.46958 * 29.99965 * 27 26 3 46 46 H 1.08996 * 109.47821 * 150.00130 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2914 2.1519 -1.1355 5 6 2.7027 3.3307 -0.7572 6 6 2.7171 3.3560 0.6554 7 6 3.1179 4.4914 1.5063 8 8 3.0798 4.3868 2.7172 9 7 3.5264 5.6451 0.9420 10 6 3.9241 6.7735 1.7876 11 6 4.8982 7.7506 1.1145 12 7 3.7256 8.4658 0.5773 13 6 3.9142 9.9204 0.6570 14 6 2.8204 10.6119 -0.1154 15 8 1.9673 9.9573 -0.6766 16 7 2.7866 11.9578 -0.1775 17 6 1.7912 12.5868 -0.8797 18 1 1.0344 12.0038 -1.3834 19 6 1.7560 13.9744 -0.9434 20 7 2.6767 14.6838 -0.3301 21 14 0.4002 14.8315 -1.9007 22 1 -0.5052 13.8151 -2.4941 23 1 -0.3733 15.7088 -0.9857 24 1 1.0010 15.6520 -2.9829 25 6 2.9611 7.9678 1.7359 26 6 2.2799 2.1208 1.0897 27 6 2.1242 1.6831 2.5232 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9850 4.1439 -1.4095 34 1 3.5571 5.7285 -0.0238 35 1 4.2144 6.4774 2.7956 36 1 5.5148 7.2876 0.3441 37 1 5.4804 8.3412 1.8218 38 1 4.8823 10.1852 0.2317 39 1 3.8773 10.2351 1.6999 40 1 3.4661 12.4815 0.2751 41 1 2.6524 15.6525 -0.3748 42 1 3.0257 8.6159 2.6099 43 1 1.9359 7.6887 1.4923 44 1 1.1179 1.9207 2.8684 45 1 2.2884 0.6079 2.5947 46 1 2.8535 2.2040 3.1435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267662603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:15 Heat of formation + Delta-G solvation = 43.661753 kcal Electronic energy + Delta-G solvation = -27994.576824 eV Core-core repulsion = 23922.309157 eV Total energy + Delta-G solvation = -4072.267667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73242 -40.43759 -38.66040 -37.62276 -35.04613 -34.00574 -33.66187 -32.40848 -31.23090 -30.36659 -29.41777 -27.56222 -25.85743 -25.57167 -24.40524 -23.61003 -22.69086 -20.76978 -19.97190 -19.47281 -19.18433 -17.93432 -17.70566 -16.31433 -16.18512 -15.98359 -15.78817 -15.29586 -15.13507 -15.00819 -14.57425 -14.38214 -14.21439 -14.00601 -13.68425 -13.41738 -13.38065 -13.18012 -13.01884 -12.82130 -12.65461 -12.53359 -12.35468 -12.03769 -11.81112 -11.56197 -11.38281 -11.11340 -11.04477 -11.03584 -10.62345 -10.32008 -10.19007 -9.88148 -9.68130 -9.47747 -9.09008 -8.80110 -8.70187 -8.16621 -7.92482 -6.38601 -3.79050 1.29469 1.98889 2.02320 3.18087 3.18455 3.28645 3.36210 3.37985 3.94544 4.04182 4.07720 4.25502 4.27752 4.45695 4.49816 4.56396 4.63858 4.76895 4.92158 4.96126 5.05189 5.06444 5.19034 5.23175 5.25227 5.31628 5.42943 5.46338 5.53241 5.61116 5.66311 5.70938 5.71918 5.75386 5.87838 6.10020 6.19899 6.29582 6.53311 6.57611 6.61034 7.17014 7.31391 7.58451 7.61280 8.09906 8.29068 8.65904 9.22173 9.58631 10.11201 10.79424 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002007 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.258577 B =13945.447330 C =14876.424791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.361 5.361 4 N -0.298 5.298 5 C 0.087 3.913 6 C -0.297 4.297 7 C 0.600 3.400 8 O -0.554 6.554 9 N -0.696 5.696 10 C 0.121 3.879 11 C -0.015 4.015 12 N -0.440 5.440 13 C 0.008 3.992 14 C 0.447 3.553 15 O -0.575 6.575 16 N -0.568 5.568 17 C -0.296 4.296 18 H 0.103 0.897 19 C 0.020 3.980 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.009 4.009 26 C 0.158 3.842 27 C -0.099 4.099 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.192 0.808 34 H 0.407 0.593 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.391 0.609 41 H 0.270 0.730 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -27.107 5.866 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.141 5.141 4 N -0.116 5.116 5 C -0.101 4.101 6 C -0.312 4.312 7 C 0.389 3.611 8 O -0.433 6.433 9 N -0.346 5.346 10 C 0.014 3.986 11 C -0.145 4.145 12 N -0.162 5.162 13 C -0.124 4.124 14 C 0.232 3.768 15 O -0.458 6.458 16 N -0.206 5.206 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.140 4.140 26 C 0.025 3.975 27 C -0.157 4.157 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.208 0.792 34 H 0.243 0.757 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.498 -28.411 4.613 28.892 hybrid contribution 0.244 1.959 0.617 2.069 sum 2.742 -26.452 5.230 27.103 Atomic orbital electron populations 1.22192 0.93834 1.03332 1.03605 1.21777 0.95611 0.77551 1.04739 1.48589 1.49850 1.12302 1.03402 1.77203 1.22542 1.04492 1.07383 1.24103 0.96568 0.95526 0.93899 1.19949 1.21400 0.96325 0.93529 1.17164 0.75833 0.81289 0.86841 1.90710 1.55513 1.82963 1.14147 1.45240 1.67189 1.11773 1.10414 1.21915 0.95722 0.85480 0.95463 1.24304 0.95298 0.95807 0.99082 1.68828 1.06560 1.05351 1.35466 1.22506 0.99997 0.90040 0.99887 1.19683 0.88091 0.82875 0.86137 1.90526 1.40894 1.64846 1.49509 1.41880 1.27188 1.04464 1.47029 1.19738 1.05867 0.89492 1.27479 0.87947 1.25251 0.98374 0.96455 0.98009 1.69621 1.34324 1.06927 1.43641 0.85808 0.80429 0.79138 0.79025 1.19251 1.20810 1.20780 1.24386 1.00806 0.95467 0.93314 1.21502 0.94142 0.90719 0.91108 1.20689 1.05128 1.01390 0.88486 0.91349 0.90220 0.91800 0.88296 0.88640 0.79162 0.75735 0.87162 0.89268 0.90164 0.89373 0.92139 0.77576 0.92003 0.90570 0.89154 0.89528 0.91294 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.12 0.69 6.93 -4.04 -0.03 0.66 16 3 N -0.36 -3.46 3.58 -56.60 -0.20 -3.66 16 4 N -0.30 -3.46 12.50 30.86 0.39 -3.08 16 5 C 0.09 0.96 11.50 -16.98 -0.20 0.76 16 6 C -0.30 -3.50 6.13 -105.06 -0.64 -4.15 16 7 C 0.60 7.84 7.81 -12.52 -0.10 7.74 16 8 O -0.55 -8.40 14.43 5.27 0.08 -8.33 16 9 N -0.70 -8.37 5.38 -54.62 -0.29 -8.66 16 10 C 0.12 1.47 4.59 -67.72 -0.31 1.16 16 11 C -0.01 -0.17 7.45 -7.55 -0.06 -0.23 16 12 N -0.44 -7.03 5.82 -246.13 -1.43 -8.47 16 13 C 0.01 0.14 5.30 -4.98 -0.03 0.11 16 14 C 0.45 10.71 7.85 -10.98 -0.09 10.62 16 15 O -0.57 -15.98 16.01 5.54 0.09 -15.89 16 16 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 18 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 19 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 20 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 21 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.01 -0.14 7.52 -7.56 -0.06 -0.20 16 26 C 0.16 1.62 7.01 -81.60 -0.57 1.05 16 27 C -0.10 -0.76 9.57 36.00 0.34 -0.42 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.30 7.02 -51.93 -0.36 -0.06 16 33 H 0.19 1.62 7.50 -52.49 -0.39 1.23 16 34 H 0.41 4.49 7.72 -40.82 -0.31 4.17 16 35 H 0.11 1.31 7.45 -51.93 -0.39 0.92 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 38 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 39 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 40 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.08 1.03 7.42 -51.93 -0.39 0.65 16 43 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.34 7.05 -51.93 -0.37 -0.03 16 46 H 0.11 1.00 6.50 -51.93 -0.34 0.67 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -36.06 388.32 -8.02 -44.09 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.55 Total: 11.96 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -1.59 Total: 8.57 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.88 Total: -62.57 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.16 Total: -24.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.06 -8.02 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267662603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.749 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds