Wall clock time and date at job start Tue Mar 31 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46810 * 2 1 4 4 C 1.53001 * 109.46697 * 239.99913 * 2 1 3 5 5 N 1.46502 * 109.46827 * 184.99969 * 4 2 1 6 6 C 1.36933 * 119.99875 * 179.72836 * 5 4 2 7 7 H 1.08006 * 120.00050 * 0.26660 * 6 5 4 8 8 C 1.38811 * 120.00295 * 180.27774 * 6 5 4 9 9 N 1.31622 * 119.99592 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00393 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47289 * 89.99443 * 10 8 6 12 12 H 1.48499 * 109.47537 * 209.99739 * 10 8 6 13 13 H 1.48506 * 109.47342 * 329.99737 * 10 8 6 14 14 N 1.46498 * 109.46923 * 119.99887 * 2 1 3 15 15 C 1.46500 * 120.00100 * 60.00289 * 14 2 1 16 16 C 1.34781 * 119.99767 * 239.99506 * 14 2 1 17 17 O 1.21281 * 119.99753 * 4.74612 * 16 14 2 18 18 C 1.50694 * 119.99973 * 184.74618 * 16 14 2 19 19 H 1.09005 * 110.85827 * 27.62523 * 18 16 14 20 20 C 1.54625 * 110.97001 * 263.79674 * 18 16 14 21 21 C 1.51286 * 104.19803 * 217.08310 * 20 18 16 22 22 O 1.21297 * 124.94596 * 196.21371 * 21 20 18 23 23 N 1.34423 * 110.10930 * 16.24981 * 21 20 18 24 24 C 1.40768 * 124.34286 * 180.38712 * 23 21 20 25 25 C 1.40259 * 126.07504 * 179.71359 * 24 23 21 26 26 N 1.30831 * 108.33026 * 179.81821 * 25 24 23 27 27 N 1.40069 * 108.37086 * 0.44131 * 26 25 24 28 28 H 0.97003 * 126.05384 * 179.73832 * 27 26 25 29 29 C 1.35756 * 126.08334 * 0.02562 * 24 23 21 30 30 C 1.46756 * 111.30763 * 0.40699 * 23 21 20 31 31 H 1.08995 * 109.47459 * 59.99653 * 1 2 3 32 32 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46892 * 300.00245 * 1 2 3 34 34 H 1.09000 * 109.46845 * 64.99895 * 4 2 1 35 35 H 1.08997 * 109.47225 * 305.00209 * 4 2 1 36 36 H 0.96999 * 120.00009 * 0.02562 * 5 4 2 37 37 H 0.97000 * 119.99492 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47054 * 95.38903 * 15 14 2 39 39 H 1.09000 * 109.46440 * 215.38634 * 15 14 2 40 40 H 1.09000 * 109.46728 * 335.38480 * 15 14 2 41 41 H 1.09007 * 110.48574 * 335.75853 * 20 18 16 42 42 H 1.09002 * 110.48928 * 98.40566 * 20 18 16 43 43 H 1.07992 * 125.83219 * 0.02562 * 25 24 23 44 44 H 1.07992 * 126.21745 * 359.97438 * 29 24 23 45 45 H 1.08997 * 110.24861 * 223.98839 * 30 23 21 46 46 H 1.09001 * 110.24588 * 101.97715 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1832 -1.4434 -2.2043 7 1 3.6461 -1.8487 -3.0492 8 6 5.5662 -1.5481 -2.1461 9 7 6.2207 -1.0540 -1.1166 10 14 6.4982 -2.3904 -3.5286 11 1 6.8660 -1.3876 -4.5604 12 1 7.7303 -3.0165 -2.9854 13 1 5.6392 -3.4366 -4.1392 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7933 -0.0355 2.0833 17 8 3.0155 1.1477 1.9367 18 6 3.3835 -0.7734 3.2573 19 1 3.5226 -1.8286 3.0223 20 6 2.5069 -0.5975 4.5188 21 6 3.5037 -0.4989 5.6525 22 8 3.2349 -0.6330 6.8277 23 7 4.7306 -0.2403 5.1680 24 6 5.8840 -0.0964 5.9621 25 6 7.1802 0.1675 5.4957 26 7 7.9825 0.2356 6.5268 27 7 7.2311 0.0081 7.6867 28 1 7.5719 -0.0028 8.5949 29 6 5.9406 -0.1941 7.3149 30 6 4.7131 -0.1267 3.7049 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7515 -0.1583 -2.1369 35 1 1.6053 -1.7198 -1.2952 36 1 3.9823 -0.4628 -0.4317 37 1 7.1871 -1.1269 -1.0761 38 1 2.4627 -2.7355 1.0562 39 1 1.5301 -2.2620 2.4964 40 1 0.7373 -2.3253 0.9040 41 1 1.9169 0.3164 4.4491 42 1 1.8577 -1.4623 4.6559 43 1 7.4663 0.2961 4.4623 44 1 5.1103 -0.3956 7.9754 45 1 5.5578 -0.6647 3.2747 46 1 4.7415 0.9216 3.4076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268062802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:22 Heat of formation + Delta-G solvation = 10.065957 kcal Electronic energy + Delta-G solvation = -29659.101234 eV Core-core repulsion = 25585.376744 eV Total energy + Delta-G solvation = -4073.724490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62734 -41.61647 -40.46909 -38.05411 -37.25855 -35.79921 -34.38785 -33.21548 -32.36510 -31.69708 -29.65250 -28.85801 -27.75418 -27.29423 -25.14692 -24.29017 -23.77017 -22.39751 -21.60974 -20.45202 -19.91861 -19.23646 -19.05469 -18.70381 -17.48483 -17.33597 -16.75150 -16.43742 -16.24186 -16.16713 -15.59545 -15.49396 -15.29647 -15.18841 -14.85940 -14.68037 -14.57872 -14.31517 -14.04722 -13.75976 -13.65488 -13.59052 -13.22206 -12.94867 -12.90848 -12.76427 -12.57684 -12.44183 -12.40510 -12.09781 -12.09004 -11.74379 -11.65752 -11.42342 -11.18150 -10.92846 -10.74053 -10.66894 -9.51648 -8.93075 -8.81245 -7.88881 -5.16902 0.69532 1.12595 1.41361 1.49778 1.51064 1.58818 1.65539 1.98230 2.03537 2.18328 2.59410 3.08040 3.31984 3.44688 3.55993 3.73634 3.86275 3.91443 3.95713 4.11406 4.18011 4.37124 4.39831 4.41942 4.43540 4.52226 4.55059 4.62840 4.70633 4.81631 4.83315 4.88067 4.94191 4.99583 5.02675 5.13421 5.23028 5.39314 5.54147 5.66578 5.71882 5.91181 6.26702 6.32037 6.49044 6.54690 6.97192 7.21344 7.39496 8.15596 8.38956 9.33822 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.003638 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.700661 B = 7694.131427 C = 9853.856212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 H 0.069 0.931 4 C 0.141 3.859 5 N -0.740 5.740 6 C -0.242 4.242 7 H 0.075 0.925 8 C -0.070 4.070 9 N -0.963 5.963 10 Si 0.967 3.033 11 H -0.293 1.293 12 H -0.297 1.297 13 H -0.269 1.269 14 N -0.592 5.592 15 C 0.071 3.929 16 C 0.527 3.473 17 O -0.578 6.578 18 C -0.110 4.110 19 H 0.133 0.867 20 C -0.120 4.120 21 C 0.515 3.485 22 O -0.552 6.552 23 N -0.528 5.528 24 C -0.015 4.015 25 C 0.038 3.962 26 N -0.298 5.298 27 N -0.460 5.460 28 H 0.459 0.541 29 C 0.050 3.950 30 C 0.118 3.882 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.373 0.627 37 H 0.249 0.751 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.196 0.804 44 H 0.200 0.800 45 H 0.093 0.907 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -2.243 14.848 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.087 0.913 4 C 0.014 3.986 5 N -0.382 5.382 6 C -0.374 4.374 7 H 0.093 0.907 8 C -0.262 4.262 9 N -0.613 5.613 10 Si 0.796 3.204 11 H -0.221 1.221 12 H -0.224 1.224 13 H -0.193 1.193 14 N -0.323 5.323 15 C -0.070 4.070 16 C 0.315 3.685 17 O -0.458 6.458 18 C -0.132 4.132 19 H 0.151 0.849 20 C -0.160 4.160 21 C 0.305 3.695 22 O -0.430 6.430 23 N -0.253 5.253 24 C -0.118 4.118 25 C -0.150 4.150 26 N -0.121 5.121 27 N -0.174 5.174 28 H 0.307 0.693 29 C -0.100 4.100 30 C -0.005 4.005 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.205 0.795 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.164 0.836 43 H 0.213 0.787 44 H 0.216 0.784 45 H 0.111 0.889 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.908 -1.622 15.581 18.021 hybrid contribution 0.653 -0.178 -0.721 0.989 sum -8.255 -1.800 14.860 17.094 Atomic orbital electron populations 1.21983 0.91404 1.03699 1.03111 1.21272 0.96011 0.96400 0.83677 0.91254 1.21212 0.84190 0.97877 0.95312 1.42461 1.01929 1.69614 1.24241 1.19582 0.89918 1.28183 0.99686 0.90742 1.25445 0.97429 1.03100 1.00266 1.69815 1.06873 1.52636 1.32013 0.85246 0.78094 0.78157 0.78861 1.22084 1.22392 1.19347 1.47742 1.49685 1.13500 1.21359 1.22019 1.01867 0.79607 1.03544 1.20302 0.77808 0.86690 0.83708 1.90685 1.61206 1.17435 1.76443 1.22163 0.95093 1.02649 0.93299 0.84924 1.22249 0.96902 1.07789 0.89030 1.21216 0.83314 0.75141 0.89854 1.90633 1.81415 1.52282 1.18702 1.45222 1.05808 1.66963 1.07349 1.17879 0.87499 1.15802 0.90613 1.23969 0.89580 1.01409 0.99998 1.77250 1.19892 1.23369 0.91592 1.46183 1.05001 1.56992 1.09187 0.69258 1.22624 0.89264 1.03069 0.95036 1.22045 0.98329 1.02813 0.77266 0.90519 0.90250 0.91613 0.95569 0.94500 0.79482 0.94209 0.93554 0.88295 0.88746 0.86671 0.83593 0.78693 0.78373 0.88864 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.18 71.98 0.66 -2.21 16 2 C 0.13 3.88 2.79 44.99 0.13 4.01 16 3 H 0.07 2.53 6.91 -2.39 -0.02 2.51 16 4 C 0.14 5.14 5.56 86.38 0.48 5.62 16 5 N -0.74 -35.87 5.43 -343.45 -1.87 -37.73 16 6 C -0.24 -12.99 9.99 84.03 0.84 -12.15 16 7 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 8 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 9 N -0.96 -57.22 13.06 21.65 0.28 -56.94 16 10 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 N -0.59 -16.12 2.24 -822.60 -1.85 -17.96 16 15 C 0.07 1.39 8.75 127.77 1.12 2.51 16 16 C 0.53 15.91 6.43 87.65 0.56 16.47 16 17 O -0.58 -22.30 15.10 -3.03 -0.05 -22.35 16 18 C -0.11 -2.55 2.56 -10.48 -0.03 -2.58 16 19 H 0.13 2.65 6.91 -2.38 -0.02 2.63 16 20 C -0.12 -2.23 6.22 30.59 0.19 -2.04 16 21 C 0.51 12.79 7.98 87.90 0.70 13.49 16 22 O -0.55 -15.82 15.64 -3.08 -0.05 -15.87 16 23 N -0.53 -13.61 3.16 -628.36 -1.99 -15.59 16 24 C -0.02 -0.40 6.80 37.62 0.26 -0.15 16 25 C 0.04 1.00 11.53 85.33 0.98 1.98 16 26 N -0.30 -7.65 12.69 -56.77 -0.72 -8.37 16 27 N -0.46 -9.10 7.40 -56.82 -0.42 -9.52 16 28 H 0.46 5.51 8.96 -213.34 -1.91 3.59 16 29 C 0.05 1.12 11.18 83.50 0.93 2.05 16 30 C 0.12 3.15 6.44 86.83 0.56 3.71 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.27 6.66 -2.39 -0.02 1.26 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.04 1.25 7.84 -2.39 -0.02 1.23 16 36 H 0.37 19.76 7.06 -92.71 -0.65 19.10 16 37 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.21 6.65 -2.39 -0.02 1.20 16 40 H 0.09 1.47 6.44 -2.39 -0.02 1.45 16 41 H 0.12 2.18 7.89 -2.38 -0.02 2.16 16 42 H 0.15 1.74 7.91 -2.39 -0.02 1.73 16 43 H 0.20 4.65 8.06 -2.91 -0.02 4.62 16 44 H 0.20 4.14 6.51 -2.91 -0.02 4.13 16 45 H 0.09 2.54 8.13 -2.39 -0.02 2.52 16 46 H 0.08 2.52 6.94 -2.39 -0.02 2.50 16 Total: -1.00 -76.17 378.06 1.69 -74.48 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -1.53 Total: 35.42 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 7.85 Total: 27.29 kcal Atomic # 7 Polarization: -139.56 SS G_CDS: -6.56 Total: -146.12 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.09 Total: -38.22 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.17 1.69 -74.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268062802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.543 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds