Wall clock time and date at job start Tue Mar 31 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00208 * 2 1 3 5 5 N 1.46504 * 109.46807 * 184.99835 * 4 2 1 6 6 C 1.36933 * 119.99978 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99952 * 359.97438 * 6 5 4 8 8 C 1.38819 * 120.00393 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99555 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00373 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46960 * 59.99660 * 10 8 6 12 12 H 1.48497 * 109.47231 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46973 * 299.99984 * 10 8 6 14 14 N 1.46499 * 109.47359 * 120.00011 * 2 1 3 15 15 C 1.46506 * 119.99537 * 59.99712 * 14 2 1 16 16 C 1.34777 * 120.00199 * 240.00361 * 14 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 14 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 14 2 19 19 H 1.08997 * 110.85499 * 303.51026 * 18 16 14 20 20 C 1.54630 * 110.97172 * 67.34138 * 18 16 14 21 21 C 1.51284 * 104.19232 * 93.31789 * 20 18 16 22 22 O 1.21304 * 124.94075 * 196.21218 * 21 20 18 23 23 N 1.34417 * 110.11482 * 16.25531 * 21 20 18 24 24 C 1.40766 * 124.34804 * 180.42073 * 23 21 20 25 25 C 1.40251 * 126.08103 * 179.66793 * 24 23 21 26 26 N 1.30832 * 108.33514 * 179.82118 * 25 24 23 27 27 N 1.40065 * 108.36834 * 0.43903 * 26 25 24 28 28 H 0.97004 * 126.05835 * 179.69065 * 27 26 25 29 29 C 1.35757 * 126.07674 * 359.97438 * 24 23 21 30 30 C 1.46763 * 111.30383 * 0.40756 * 23 21 20 31 31 H 1.09000 * 109.47156 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.46768 * 59.99970 * 1 2 3 33 33 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47347 * 304.99884 * 4 2 1 35 35 H 1.09000 * 109.47615 * 65.00465 * 4 2 1 36 36 H 0.96994 * 120.00463 * 0.02562 * 5 4 2 37 37 H 0.96998 * 119.99840 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.46921 * 269.99744 * 15 14 2 39 39 H 1.08994 * 109.46996 * 30.00327 * 15 14 2 40 40 H 1.09001 * 109.46578 * 150.00190 * 15 14 2 41 41 H 1.08996 * 110.48406 * 212.00231 * 20 18 16 42 42 H 1.09003 * 110.48198 * 334.64546 * 20 18 16 43 43 H 1.07999 * 125.83412 * 0.02562 * 25 24 23 44 44 H 1.07993 * 126.22373 * 359.96090 * 29 24 23 45 45 H 1.08999 * 110.24465 * 223.98631 * 30 23 21 46 46 H 1.08989 * 110.32299 * 102.01853 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2067 7 1 3.6466 -1.8446 -3.0512 8 6 5.5672 -1.5388 -2.1510 9 7 6.2217 -1.0446 -1.1216 10 14 6.4999 -2.3748 -3.5368 11 1 6.2432 -1.6557 -4.8105 12 1 7.9546 -2.3506 -3.2396 13 1 6.0432 -3.7823 -3.6622 14 7 2.0184 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0356 2.0833 17 8 3.0865 1.1254 1.8912 18 6 3.3007 -0.7479 3.3106 19 1 2.4742 -1.1585 3.8905 20 6 4.3135 -1.8526 2.9303 21 6 5.6605 -1.1710 3.0292 22 8 6.6908 -1.5954 2.5499 23 7 5.5495 -0.0271 3.7264 24 6 6.6194 0.8485 3.9913 25 6 6.5439 2.0521 4.7074 26 7 7.7392 2.5825 4.7480 27 7 8.6183 1.7435 4.0516 28 1 9.5673 1.8946 3.9193 29 6 7.9067 0.6810 3.5940 30 6 4.1696 0.1919 4.1756 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -1.7197 -1.2952 35 1 1.7517 -0.1583 -2.1370 36 1 3.9824 -0.4628 -0.4317 37 1 7.1884 -1.1142 -1.0828 38 1 0.7376 -2.1443 1.9993 39 1 1.5295 -2.5968 0.4708 40 1 2.4629 -2.5819 1.9863 41 1 4.2537 -2.6834 3.6333 42 1 4.1354 -2.1993 1.9123 43 1 5.6521 2.4681 5.1525 44 1 8.2946 -0.1469 3.0192 45 1 3.8800 1.2300 4.0122 46 1 4.0693 -0.0657 5.2298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268062808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:26 Heat of formation + Delta-G solvation = 43.245913 kcal Electronic energy + Delta-G solvation = -30737.436376 eV Core-core repulsion = 26665.150677 eV Total energy + Delta-G solvation = -4072.285699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37776 -40.43569 -38.98308 -36.62066 -35.76819 -34.08586 -33.11506 -31.57953 -31.10113 -30.00857 -28.36103 -27.66931 -26.68385 -25.60986 -23.85453 -22.59148 -22.39656 -21.19877 -20.32847 -19.17238 -18.76958 -17.89526 -17.35155 -16.99439 -16.25388 -15.98957 -15.32603 -15.16063 -14.80687 -14.62631 -14.36336 -14.19235 -13.71375 -13.61482 -13.45891 -13.29959 -13.15494 -13.05211 -12.54536 -12.32661 -12.24696 -12.20630 -12.10113 -11.88727 -11.51564 -11.46511 -11.36856 -10.87838 -10.78880 -10.71836 -10.45840 -10.15878 -10.02145 -9.62333 -9.51754 -9.46100 -9.43225 -8.79454 -8.30398 -7.45688 -6.82932 -5.62875 -2.94037 1.97394 2.55948 2.74226 2.85380 3.19982 3.31830 3.44240 3.48759 3.53019 3.55455 4.32955 4.39687 4.53813 4.66905 4.87924 4.99038 5.11832 5.21912 5.29185 5.33998 5.40278 5.44781 5.55566 5.60282 5.63974 5.67730 5.70607 5.74467 5.81066 5.87093 6.01248 6.07006 6.10541 6.19545 6.23767 6.37526 6.51459 6.72516 6.95867 7.04427 7.28741 7.37794 7.67675 7.73842 7.77378 8.45933 8.50006 8.52281 9.63691 10.20723 10.56041 11.57214 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009083 B = 0.005227 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.934577 B = 5356.027461 C = 7394.596304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.252 4.252 7 H 0.066 0.934 8 C -0.006 4.006 9 N -0.914 5.914 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.593 5.593 15 C 0.071 3.929 16 C 0.523 3.477 17 O -0.530 6.530 18 C -0.123 4.123 19 H 0.122 0.878 20 C -0.145 4.145 21 C 0.521 3.479 22 O -0.497 6.497 23 N -0.534 5.534 24 C 0.021 3.979 25 C 0.040 3.960 26 N -0.286 5.286 27 N -0.475 5.475 28 H 0.443 0.557 29 C 0.044 3.956 30 C 0.120 3.880 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.026 0.974 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.184 0.816 44 H 0.192 0.808 45 H 0.098 0.902 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 -0.281 15.015 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.204 4.204 9 N -0.560 5.560 10 Si 0.733 3.267 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.325 5.325 15 C -0.072 4.072 16 C 0.310 3.690 17 O -0.406 6.406 18 C -0.144 4.144 19 H 0.140 0.860 20 C -0.185 4.185 21 C 0.309 3.691 22 O -0.370 6.370 23 N -0.262 5.262 24 C -0.081 4.081 25 C -0.148 4.148 26 N -0.110 5.110 27 N -0.188 5.188 28 H 0.287 0.713 29 C -0.105 4.105 30 C -0.003 4.003 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.201 0.799 44 H 0.209 0.791 45 H 0.116 0.884 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.157 0.987 14.906 16.565 hybrid contribution 0.540 -1.091 -1.133 1.663 sum -6.617 -0.104 13.774 15.281 Atomic orbital electron populations 1.22039 0.95117 1.02032 1.01997 1.21408 0.93245 0.98505 0.84627 0.88276 1.20988 0.87299 0.96659 0.93542 1.42254 0.99497 1.70245 1.25167 1.19058 0.89358 1.30465 0.99395 0.91570 1.24747 0.96458 1.01408 0.97761 1.69644 1.07313 1.49562 1.29508 0.86371 0.79208 0.79255 0.81861 1.21490 1.21806 1.21401 1.47591 1.50427 1.12188 1.22322 1.21930 1.00128 0.82085 1.03105 1.20066 0.77980 0.86864 0.84081 1.90712 1.56734 1.17075 1.76063 1.22293 0.99063 0.96892 0.96197 0.86009 1.22449 0.91813 0.97625 1.06617 1.20662 0.90887 0.80600 0.76982 1.90720 1.33141 1.67350 1.45793 1.45019 1.07255 1.20957 1.52968 1.17504 0.87782 0.94698 1.08151 1.23578 0.96657 0.93515 1.01056 1.77170 0.99912 1.16677 1.17210 1.46072 1.10923 1.17389 1.44372 0.71293 1.22586 0.91697 0.94472 1.01717 1.21977 0.79323 1.01877 0.97099 0.92682 0.91490 0.92394 0.96265 0.95604 0.78064 0.93412 0.93102 0.90198 0.90658 0.86938 0.85836 0.79917 0.79124 0.88388 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 37.16 0.34 -1.49 16 2 C 0.13 2.05 2.80 -67.93 -0.19 1.85 16 3 H 0.10 1.89 6.90 -51.93 -0.36 1.54 16 4 C 0.14 2.84 5.50 -4.04 -0.02 2.82 16 5 N -0.73 -18.60 5.43 -59.90 -0.33 -18.92 16 6 C -0.25 -7.13 9.99 -15.06 -0.15 -7.28 16 7 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 8 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 9 N -0.91 -28.49 13.06 55.49 0.72 -27.76 16 10 Si 0.90 23.08 29.55 -169.99 -5.02 18.06 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 N -0.59 -8.89 2.24 -173.93 -0.39 -9.28 16 15 C 0.07 0.81 8.94 59.85 0.54 1.35 16 16 C 0.52 8.41 6.70 -10.98 -0.07 8.33 16 17 O -0.53 -10.63 14.86 5.55 0.08 -10.55 16 18 C -0.12 -1.44 2.63 -90.14 -0.24 -1.68 16 19 H 0.12 0.88 8.05 -51.93 -0.42 0.47 16 20 C -0.14 -1.99 5.12 -26.74 -0.14 -2.13 16 21 C 0.52 9.46 7.98 -10.86 -0.09 9.37 16 22 O -0.50 -11.06 15.64 5.54 0.09 -10.97 16 23 N -0.53 -8.47 3.16 -112.48 -0.36 -8.82 16 24 C 0.02 0.34 6.80 -83.88 -0.57 -0.23 16 25 C 0.04 0.58 11.53 -17.22 -0.20 0.38 16 26 N -0.29 -4.27 12.69 30.70 0.39 -3.88 16 27 N -0.48 -6.55 7.40 30.69 0.23 -6.32 16 28 H 0.44 4.52 8.96 -182.62 -1.64 2.88 16 29 C 0.04 0.71 11.18 -16.67 -0.19 0.52 16 30 C 0.12 1.43 6.26 -3.12 -0.02 1.41 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 34 H 0.02 0.37 6.88 -51.93 -0.36 0.01 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.39 10.74 7.06 -40.82 -0.29 10.45 16 37 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 1.02 6.53 -51.93 -0.34 0.68 16 40 H 0.07 0.80 4.47 -51.93 -0.23 0.57 16 41 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.12 2.07 6.26 -51.93 -0.33 1.74 16 43 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.19 3.29 6.51 -52.49 -0.34 2.95 16 45 H 0.10 1.25 7.01 -51.93 -0.36 0.89 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -38.58 374.81 -7.59 -46.17 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -7.56 Total: 13.68 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -1.09 Total: 12.96 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: 0.27 Total: -74.99 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.17 Total: -21.52 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.58 -7.59 -46.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268062808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.418 kcal (2) G-P(sol) polarization free energy of solvation -38.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds