Wall clock time and date at job start Tue Mar 31 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00208 * 2 1 3 5 5 N 1.46504 * 109.46807 * 184.99835 * 4 2 1 6 6 C 1.36933 * 119.99978 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99952 * 359.97438 * 6 5 4 8 8 C 1.38819 * 120.00393 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99555 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00373 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46960 * 59.99660 * 10 8 6 12 12 H 1.48497 * 109.47231 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46973 * 299.99984 * 10 8 6 14 14 N 1.46499 * 109.47359 * 120.00011 * 2 1 3 15 15 C 1.46506 * 119.99537 * 59.99712 * 14 2 1 16 16 C 1.34777 * 120.00199 * 240.00361 * 14 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 14 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 14 2 19 19 H 1.08997 * 110.85499 * 303.51026 * 18 16 14 20 20 C 1.54630 * 110.97172 * 67.34138 * 18 16 14 21 21 C 1.51284 * 104.19232 * 93.31789 * 20 18 16 22 22 O 1.21304 * 124.94075 * 196.21218 * 21 20 18 23 23 N 1.34417 * 110.11482 * 16.25531 * 21 20 18 24 24 C 1.40766 * 124.34804 * 180.42073 * 23 21 20 25 25 C 1.40251 * 126.08103 * 179.66793 * 24 23 21 26 26 N 1.30832 * 108.33514 * 179.82118 * 25 24 23 27 27 N 1.40065 * 108.36834 * 0.43903 * 26 25 24 28 28 H 0.97004 * 126.05835 * 179.69065 * 27 26 25 29 29 C 1.35757 * 126.07674 * 359.97438 * 24 23 21 30 30 C 1.46763 * 111.30383 * 0.40756 * 23 21 20 31 31 H 1.09000 * 109.47156 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.46768 * 59.99970 * 1 2 3 33 33 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47347 * 304.99884 * 4 2 1 35 35 H 1.09000 * 109.47615 * 65.00465 * 4 2 1 36 36 H 0.96994 * 120.00463 * 0.02562 * 5 4 2 37 37 H 0.96998 * 119.99840 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.46921 * 269.99744 * 15 14 2 39 39 H 1.08994 * 109.46996 * 30.00327 * 15 14 2 40 40 H 1.09001 * 109.46578 * 150.00190 * 15 14 2 41 41 H 1.08996 * 110.48406 * 212.00231 * 20 18 16 42 42 H 1.09003 * 110.48198 * 334.64546 * 20 18 16 43 43 H 1.07999 * 125.83412 * 0.02562 * 25 24 23 44 44 H 1.07993 * 126.22373 * 359.96090 * 29 24 23 45 45 H 1.08999 * 110.24465 * 223.98631 * 30 23 21 46 46 H 1.08989 * 110.32299 * 102.01853 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2067 7 1 3.6466 -1.8446 -3.0512 8 6 5.5672 -1.5388 -2.1510 9 7 6.2217 -1.0446 -1.1216 10 14 6.4999 -2.3748 -3.5368 11 1 6.2432 -1.6557 -4.8105 12 1 7.9546 -2.3506 -3.2396 13 1 6.0432 -3.7823 -3.6622 14 7 2.0184 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0356 2.0833 17 8 3.0865 1.1254 1.8912 18 6 3.3007 -0.7479 3.3106 19 1 2.4742 -1.1585 3.8905 20 6 4.3135 -1.8526 2.9303 21 6 5.6605 -1.1710 3.0292 22 8 6.6908 -1.5954 2.5499 23 7 5.5495 -0.0271 3.7264 24 6 6.6194 0.8485 3.9913 25 6 6.5439 2.0521 4.7074 26 7 7.7392 2.5825 4.7480 27 7 8.6183 1.7435 4.0516 28 1 9.5673 1.8946 3.9193 29 6 7.9067 0.6810 3.5940 30 6 4.1696 0.1919 4.1756 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -1.7197 -1.2952 35 1 1.7517 -0.1583 -2.1370 36 1 3.9824 -0.4628 -0.4317 37 1 7.1884 -1.1142 -1.0828 38 1 0.7376 -2.1443 1.9993 39 1 1.5295 -2.5968 0.4708 40 1 2.4629 -2.5819 1.9863 41 1 4.2537 -2.6834 3.6333 42 1 4.1354 -2.1993 1.9123 43 1 5.6521 2.4681 5.1525 44 1 8.2946 -0.1469 3.0192 45 1 3.8800 1.2300 4.0122 46 1 4.0693 -0.0657 5.2298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268062808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:26 Heat of formation + Delta-G solvation = 13.408507 kcal Electronic energy + Delta-G solvation = -30738.730223 eV Core-core repulsion = 26665.150677 eV Total energy + Delta-G solvation = -4073.579546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55317 -41.60681 -40.25776 -38.00061 -37.12067 -35.82912 -34.44083 -33.11969 -32.29846 -31.66167 -29.52853 -28.76383 -27.68718 -27.34225 -25.07375 -24.28774 -23.73042 -22.40465 -21.54814 -20.42170 -20.00537 -19.08271 -19.04711 -18.46962 -17.50190 -17.18682 -16.78731 -16.50344 -16.28830 -15.99614 -15.55211 -15.46879 -15.29853 -15.13553 -14.92777 -14.70989 -14.22683 -14.11879 -13.77498 -13.74004 -13.64439 -13.28568 -13.22386 -13.11648 -12.90113 -12.75582 -12.57433 -12.50278 -12.45621 -12.17330 -12.07986 -11.76525 -11.70173 -11.32159 -10.94029 -10.81161 -10.68611 -10.63743 -9.47866 -8.95815 -8.67653 -7.88323 -5.18773 0.74388 1.30506 1.41999 1.45232 1.51830 1.62709 1.66980 2.08279 2.14504 2.30474 2.55311 3.27237 3.35055 3.43030 3.52968 3.82977 3.90307 3.94438 4.03902 4.14969 4.33179 4.38765 4.40724 4.49083 4.52681 4.57607 4.59279 4.74072 4.79484 4.83828 4.87153 4.89867 4.94289 4.99605 5.13046 5.14656 5.20928 5.36661 5.49763 5.72684 5.87019 6.10864 6.26237 6.26655 6.54464 6.59523 7.20397 7.28663 7.35298 8.13072 8.35384 9.30765 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009083 B = 0.005227 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.934577 B = 5356.027461 C = 7394.596304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.130 3.870 3 H 0.062 0.938 4 C 0.140 3.860 5 N -0.740 5.740 6 C -0.248 4.248 7 H 0.075 0.925 8 C -0.070 4.070 9 N -0.949 5.949 10 Si 0.966 3.034 11 H -0.280 1.280 12 H -0.304 1.304 13 H -0.273 1.273 14 N -0.594 5.594 15 C 0.064 3.936 16 C 0.509 3.491 17 O -0.582 6.582 18 C -0.106 4.106 19 H 0.185 0.815 20 C -0.134 4.134 21 C 0.497 3.503 22 O -0.558 6.558 23 N -0.534 5.534 24 C -0.001 4.001 25 C 0.047 3.953 26 N -0.295 5.295 27 N -0.465 5.465 28 H 0.455 0.545 29 C 0.025 3.975 30 C 0.114 3.886 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.370 0.630 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.091 0.909 43 H 0.217 0.783 44 H 0.173 0.827 45 H 0.089 0.911 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 -1.336 16.621 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 H 0.081 0.919 4 C 0.013 3.987 5 N -0.382 5.382 6 C -0.380 4.380 7 H 0.093 0.907 8 C -0.264 4.264 9 N -0.598 5.598 10 Si 0.795 3.205 11 H -0.207 1.207 12 H -0.231 1.231 13 H -0.199 1.199 14 N -0.325 5.325 15 C -0.077 4.077 16 C 0.298 3.702 17 O -0.462 6.462 18 C -0.127 4.127 19 H 0.202 0.798 20 C -0.174 4.174 21 C 0.287 3.713 22 O -0.436 6.436 23 N -0.260 5.260 24 C -0.104 4.104 25 C -0.141 4.141 26 N -0.119 5.119 27 N -0.179 5.179 28 H 0.302 0.698 29 C -0.124 4.124 30 C -0.007 4.007 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.202 0.798 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.179 0.821 42 H 0.110 0.890 43 H 0.234 0.766 44 H 0.190 0.810 45 H 0.107 0.893 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.376 -0.079 16.506 19.496 hybrid contribution 1.448 -0.713 -1.685 2.333 sum -8.927 -0.792 14.821 17.320 Atomic orbital electron populations 1.21931 0.91088 1.03691 1.03028 1.21213 0.96121 0.96118 0.83934 0.91943 1.21219 0.84132 0.97874 0.95456 1.42458 1.01918 1.69826 1.24031 1.19479 0.89721 1.29025 0.99809 0.90685 1.25534 0.97607 1.03056 1.00157 1.69860 1.06422 1.51831 1.31693 0.85337 0.77023 0.78912 0.79194 1.20659 1.23096 1.19890 1.47736 1.49939 1.13486 1.21357 1.22194 1.02596 0.79717 1.03212 1.20935 0.77285 0.86596 0.85399 1.90688 1.58485 1.19588 1.77488 1.22439 1.00145 0.95507 0.94610 0.79809 1.22450 0.89599 0.99246 1.06108 1.21599 0.91849 0.81412 0.76442 1.90678 1.35496 1.69105 1.48272 1.45261 1.08674 1.20028 1.52064 1.17882 0.88033 0.95756 1.08747 1.24058 0.97426 0.92425 1.00183 1.77131 1.00393 1.16915 1.17425 1.46075 1.11522 1.16503 1.43794 0.69786 1.22483 0.92669 0.94899 1.02348 1.22393 0.76883 1.01703 0.99760 0.91320 0.90872 0.90301 0.94404 0.95985 0.79797 0.94864 0.88561 0.91672 0.89725 0.82129 0.89031 0.76621 0.81008 0.89260 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.19 71.98 0.66 -2.27 16 2 C 0.13 4.15 2.80 44.99 0.13 4.28 16 3 H 0.06 2.46 6.90 -2.38 -0.02 2.44 16 4 C 0.14 5.49 5.50 86.38 0.48 5.97 16 5 N -0.74 -38.61 5.43 -343.44 -1.87 -40.48 16 6 C -0.25 -14.24 9.99 84.04 0.84 -13.40 16 7 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 9 N -0.95 -61.93 13.06 21.65 0.28 -61.65 16 10 Si 0.97 48.57 29.55 68.60 2.03 50.60 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 13 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 14 N -0.59 -16.81 2.24 -822.58 -1.84 -18.65 16 15 C 0.06 1.27 8.94 127.77 1.14 2.41 16 16 C 0.51 15.77 6.70 87.66 0.59 16.36 16 17 O -0.58 -23.80 14.86 -3.04 -0.05 -23.85 16 18 C -0.11 -2.14 2.63 -10.48 -0.03 -2.17 16 19 H 0.18 1.44 8.05 -2.39 -0.02 1.42 16 20 C -0.13 -3.47 5.12 30.59 0.16 -3.31 16 21 C 0.50 18.49 7.98 87.90 0.70 19.19 16 22 O -0.56 -26.56 15.64 -3.10 -0.05 -26.60 16 23 N -0.53 -16.81 3.16 -628.37 -1.99 -18.80 16 24 C 0.00 -0.04 6.80 37.62 0.26 0.22 16 25 C 0.05 1.31 11.53 85.33 0.98 2.30 16 26 N -0.30 -8.70 12.69 -56.77 -0.72 -9.42 16 27 N -0.46 -13.24 7.40 -56.81 -0.42 -13.66 16 28 H 0.46 9.73 8.96 -213.34 -1.91 7.82 16 29 C 0.02 0.86 11.18 83.50 0.93 1.79 16 30 C 0.11 2.39 6.26 86.83 0.54 2.93 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 34 H 0.04 1.37 6.88 -2.39 -0.02 1.35 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.37 21.47 7.06 -92.71 -0.65 20.82 16 37 H 0.24 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.49 6.53 -2.39 -0.02 1.48 16 40 H 0.08 1.52 4.47 -2.39 -0.01 1.51 16 41 H 0.16 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 3.05 6.26 -2.39 -0.01 3.04 16 43 H 0.22 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.17 6.61 6.51 -2.91 -0.02 6.59 16 45 H 0.09 2.10 7.01 -2.39 -0.02 2.09 16 46 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -91.94 374.81 1.70 -90.24 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -1.53 Total: 41.71 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 7.85 Total: 30.55 kcal Atomic # 7 Polarization: -156.09 SS G_CDS: -6.55 Total: -162.64 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.09 Total: -50.45 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -91.94 1.70 -90.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268062808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.647 kcal (2) G-P(sol) polarization free energy of solvation -91.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds