Wall clock time and date at job start Tue Mar 31 2020 18:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47089 * 2 1 4 4 C 1.53000 * 109.46922 * 119.99767 * 2 1 3 5 5 N 1.46498 * 109.46946 * 175.00269 * 4 2 1 6 6 C 1.36941 * 119.99685 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00213 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99909 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00183 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47053 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46921 * 120.00092 * 10 8 6 13 13 H 1.48502 * 109.47469 * 240.00060 * 10 8 6 14 14 N 1.46499 * 109.47264 * 240.00022 * 2 1 3 15 15 C 1.46506 * 119.99537 * 299.99724 * 14 2 1 16 16 C 1.34777 * 120.00199 * 120.00374 * 14 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 14 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 14 2 19 19 H 1.08999 * 110.85551 * 55.93228 * 18 16 14 20 20 C 1.54627 * 110.96675 * 292.09891 * 18 16 14 21 21 C 1.51281 * 104.19446 * 217.08440 * 20 18 16 22 22 O 1.21309 * 124.93993 * 196.22062 * 21 20 18 23 23 N 1.34415 * 110.11705 * 16.25542 * 21 20 18 24 24 C 1.40765 * 124.34873 * 180.38952 * 23 21 20 25 25 C 1.40260 * 126.07715 * 179.71302 * 24 23 21 26 26 N 1.30827 * 108.33126 * 179.80889 * 25 24 23 27 27 N 1.40072 * 108.37035 * 0.44718 * 26 25 24 28 28 H 0.96999 * 126.05366 * 179.73327 * 27 26 25 29 29 C 1.35755 * 126.08199 * 0.02562 * 24 23 21 30 30 C 1.46758 * 111.29990 * 0.40488 * 23 21 20 31 31 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47544 * 300.00530 * 1 2 3 33 33 H 1.09007 * 109.46721 * 60.00439 * 1 2 3 34 34 H 1.09002 * 109.46979 * 294.99999 * 4 2 1 35 35 H 1.09001 * 109.47089 * 54.99824 * 4 2 1 36 36 H 0.96994 * 120.00525 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99902 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.46921 * 269.99744 * 15 14 2 39 39 H 1.08994 * 109.46996 * 30.00327 * 15 14 2 40 40 H 1.09001 * 109.46578 * 150.00190 * 15 14 2 41 41 H 1.09002 * 110.48865 * 335.76401 * 20 18 16 42 42 H 1.09008 * 110.48831 * 98.40762 * 20 18 16 43 43 H 1.08000 * 125.83264 * 0.02562 * 25 24 23 44 44 H 1.08000 * 126.21716 * 359.97438 * 29 24 23 45 45 H 1.09004 * 110.24884 * 223.98670 * 30 23 21 46 46 H 1.09007 * 110.24556 * 101.98493 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2069 7 1 3.6466 -1.8439 3.0517 8 6 5.5670 -1.5388 2.1511 9 7 6.2216 -1.0455 1.1213 10 14 6.4998 -2.3736 3.5377 11 1 5.5394 -2.8401 4.5698 12 1 7.2507 -3.5362 2.9994 13 1 7.4508 -1.4087 4.1458 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7933 -0.0356 -2.0833 17 8 3.0859 1.1256 -1.8915 18 6 3.2905 -0.7443 -3.3169 19 1 2.4593 -1.1549 -3.8901 20 6 4.3085 -1.8483 -2.9483 21 6 5.3306 -1.7974 -4.0624 22 8 6.1369 -2.6704 -4.3060 23 7 5.2159 -0.6437 -4.7427 24 6 6.0155 -0.2892 -5.8456 25 6 5.9236 0.8997 -6.5841 26 7 6.8314 0.8704 -7.5257 27 7 7.5283 -0.3409 -7.4295 28 1 8.2537 -0.6295 -8.0051 29 6 7.0086 -1.0396 -6.3873 30 6 4.1501 0.1988 -4.1875 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.7516 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2952 36 1 3.9824 -0.4628 0.4317 37 1 7.1882 -1.1157 1.0822 38 1 2.4158 -2.7377 -0.9715 39 1 0.6905 -2.3002 -0.9845 40 1 1.6238 -2.2853 -2.5001 41 1 4.7782 -1.6294 -1.9893 42 1 3.8213 -2.8231 -2.9218 43 1 5.2254 1.7037 -6.4039 44 1 7.3278 -2.0148 -6.0503 45 1 3.5481 0.6237 -4.9908 46 1 4.5775 0.9927 -3.5749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268062810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:34 Heat of formation + Delta-G solvation = 35.716255 kcal Electronic energy + Delta-G solvation = -29945.565605 eV Core-core repulsion = 25872.953395 eV Total energy + Delta-G solvation = -4072.612210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59295 -40.53293 -39.26371 -36.74882 -36.01040 -34.13896 -33.23396 -31.70538 -31.35638 -30.08890 -28.58999 -27.76174 -26.75944 -25.65526 -23.95065 -22.79920 -22.50353 -21.32232 -20.43168 -19.38710 -18.73640 -18.19947 -17.49169 -17.07251 -16.42670 -16.23376 -15.36603 -15.27656 -14.88857 -14.72393 -14.59510 -14.41950 -13.84431 -13.82647 -13.54493 -13.43556 -13.16710 -13.15230 -12.81646 -12.65945 -12.44489 -12.29950 -12.02306 -11.90822 -11.53937 -11.46485 -11.31820 -11.12604 -10.86261 -10.78839 -10.48520 -10.37060 -10.02694 -9.95287 -9.79123 -9.71679 -9.44273 -8.88586 -8.34244 -7.75392 -6.91616 -5.75373 -3.04304 1.68440 2.24696 2.47252 2.80079 3.01838 3.06891 3.25282 3.43985 3.49250 3.52106 4.17792 4.29371 4.58194 4.65582 4.74920 4.80429 4.88302 5.04479 5.21650 5.27225 5.34590 5.37342 5.41384 5.51823 5.52669 5.58898 5.61285 5.67108 5.82977 5.92657 5.99530 6.03935 6.07201 6.08489 6.15929 6.32959 6.44088 6.69449 6.74804 6.91192 6.99175 7.10097 7.46791 7.61683 7.70433 8.15752 8.38919 8.42606 9.54683 10.11864 10.47283 11.46796 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.003798 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.999392 B = 7369.606059 C = 9124.820009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.010 4.010 9 N -0.928 5.928 10 Si 0.904 3.096 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.591 5.591 15 C 0.075 3.925 16 C 0.530 3.470 17 O -0.533 6.533 18 C -0.120 4.120 19 H 0.114 0.886 20 C -0.140 4.140 21 C 0.524 3.476 22 O -0.523 6.523 23 N -0.536 5.536 24 C 0.015 3.985 25 C 0.042 3.958 26 N -0.281 5.281 27 N -0.475 5.475 28 H 0.444 0.556 29 C 0.039 3.961 30 C 0.119 3.881 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.028 0.972 35 H 0.021 0.979 36 H 0.385 0.615 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.188 0.812 44 H 0.192 0.808 45 H 0.087 0.913 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -0.299 -15.320 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.207 4.207 9 N -0.576 5.576 10 Si 0.735 3.265 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 N -0.324 5.324 15 C -0.068 4.068 16 C 0.317 3.683 17 O -0.410 6.410 18 C -0.142 4.142 19 H 0.132 0.868 20 C -0.180 4.180 21 C 0.313 3.687 22 O -0.399 6.399 23 N -0.263 5.263 24 C -0.088 4.088 25 C -0.147 4.147 26 N -0.104 5.104 27 N -0.187 5.187 28 H 0.288 0.712 29 C -0.109 4.109 30 C -0.004 4.004 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.150 0.850 42 H 0.129 0.871 43 H 0.205 0.795 44 H 0.209 0.791 45 H 0.105 0.895 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.242 0.395 -16.143 18.129 hybrid contribution 0.705 -1.047 1.112 1.682 sum -7.538 -0.652 -15.031 16.828 Atomic orbital electron populations 1.22063 0.95136 1.02062 1.02138 1.21422 0.93256 0.98536 0.84552 0.88086 1.21003 0.87148 0.96779 0.93564 1.42277 0.99638 1.70157 1.25130 1.19225 0.89394 1.29408 0.99192 0.91289 1.24710 0.96408 1.01556 0.97979 1.69659 1.07161 1.50694 1.30130 0.86173 0.79981 0.78802 0.81539 1.20645 1.21896 1.21930 1.47593 1.50156 1.12276 1.22344 1.21850 1.01767 0.82201 1.01009 1.19850 0.78001 0.86643 0.83828 1.90711 1.56970 1.16863 1.76461 1.22179 0.98992 0.96972 0.96009 0.86762 1.22396 0.95384 1.00060 1.00194 1.20905 0.84656 0.80557 0.82611 1.90655 1.39018 1.40643 1.69593 1.45208 1.33945 1.19087 1.28068 1.17598 0.99392 0.96905 0.94886 1.23690 0.99305 0.97711 0.93947 1.77235 1.08806 1.01741 1.22656 1.46115 1.31426 1.14192 1.27005 0.71157 1.22551 0.96969 0.99772 0.91600 1.22068 0.87722 0.93352 0.97222 0.92327 0.91362 0.92591 0.95481 0.96137 0.78073 0.93568 0.91286 0.91058 0.91638 0.85012 0.87051 0.79549 0.79142 0.89514 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.17 37.16 0.34 -1.41 16 2 C 0.13 1.93 2.80 -67.93 -0.19 1.74 16 3 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 4 C 0.14 2.70 5.55 -4.04 -0.02 2.68 16 5 N -0.73 -17.73 5.43 -59.91 -0.33 -18.06 16 6 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 9 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 10 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 N -0.59 -8.38 2.24 -173.93 -0.39 -8.77 16 15 C 0.07 0.83 8.36 59.85 0.50 1.33 16 16 C 0.53 8.02 6.66 -10.98 -0.07 7.95 16 17 O -0.53 -9.96 14.83 5.55 0.08 -9.88 16 18 C -0.12 -1.41 2.55 -90.14 -0.23 -1.64 16 19 H 0.11 0.96 7.24 -51.93 -0.38 0.58 16 20 C -0.14 -1.95 5.48 -26.74 -0.15 -2.10 16 21 C 0.52 8.15 7.98 -10.86 -0.09 8.06 16 22 O -0.52 -9.50 15.64 5.53 0.09 -9.41 16 23 N -0.54 -7.32 3.16 -112.48 -0.36 -7.68 16 24 C 0.01 0.20 6.80 -83.88 -0.57 -0.37 16 25 C 0.04 0.50 11.53 -17.22 -0.20 0.30 16 26 N -0.28 -3.47 12.69 30.70 0.39 -3.08 16 27 N -0.48 -5.03 7.40 30.69 0.23 -4.80 16 28 H 0.44 3.11 8.96 -182.62 -1.64 1.47 16 29 C 0.04 0.49 11.18 -16.68 -0.19 0.30 16 30 C 0.12 1.42 6.29 -3.13 -0.02 1.40 16 31 H 0.06 0.59 6.66 -51.93 -0.35 0.24 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 36 H 0.39 10.10 7.06 -40.82 -0.29 9.81 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 40 H 0.06 0.53 6.10 -51.93 -0.32 0.22 16 41 H 0.13 2.38 7.89 -51.93 -0.41 1.97 16 42 H 0.11 1.30 7.56 -51.92 -0.39 0.91 16 43 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.19 2.40 6.51 -52.49 -0.34 2.06 16 45 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 46 H 0.10 1.44 6.96 -51.93 -0.36 1.08 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -35.74 376.18 -7.70 -43.43 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.65 Total: 11.18 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.13 Total: 11.14 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: 0.27 Total: -69.47 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.74 -7.70 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268062810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.147 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds