Wall clock time and date at job start Tue Mar 31 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47089 * 2 1 4 4 C 1.53000 * 109.46922 * 119.99767 * 2 1 3 5 5 N 1.46498 * 109.46946 * 175.00269 * 4 2 1 6 6 C 1.36941 * 119.99685 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00213 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99909 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00183 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47053 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46921 * 120.00092 * 10 8 6 13 13 H 1.48502 * 109.47469 * 240.00060 * 10 8 6 14 14 N 1.46499 * 109.47264 * 240.00022 * 2 1 3 15 15 C 1.46506 * 119.99537 * 299.99724 * 14 2 1 16 16 C 1.34777 * 120.00199 * 120.00374 * 14 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 14 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 14 2 19 19 H 1.08999 * 110.85551 * 55.93228 * 18 16 14 20 20 C 1.54627 * 110.96675 * 292.09891 * 18 16 14 21 21 C 1.51281 * 104.19446 * 217.08440 * 20 18 16 22 22 O 1.21309 * 124.93993 * 196.22062 * 21 20 18 23 23 N 1.34415 * 110.11705 * 16.25542 * 21 20 18 24 24 C 1.40765 * 124.34873 * 180.38952 * 23 21 20 25 25 C 1.40260 * 126.07715 * 179.71302 * 24 23 21 26 26 N 1.30827 * 108.33126 * 179.80889 * 25 24 23 27 27 N 1.40072 * 108.37035 * 0.44718 * 26 25 24 28 28 H 0.96999 * 126.05366 * 179.73327 * 27 26 25 29 29 C 1.35755 * 126.08199 * 0.02562 * 24 23 21 30 30 C 1.46758 * 111.29990 * 0.40488 * 23 21 20 31 31 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47544 * 300.00530 * 1 2 3 33 33 H 1.09007 * 109.46721 * 60.00439 * 1 2 3 34 34 H 1.09002 * 109.46979 * 294.99999 * 4 2 1 35 35 H 1.09001 * 109.47089 * 54.99824 * 4 2 1 36 36 H 0.96994 * 120.00525 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99902 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.46921 * 269.99744 * 15 14 2 39 39 H 1.08994 * 109.46996 * 30.00327 * 15 14 2 40 40 H 1.09001 * 109.46578 * 150.00190 * 15 14 2 41 41 H 1.09002 * 110.48865 * 335.76401 * 20 18 16 42 42 H 1.09008 * 110.48831 * 98.40762 * 20 18 16 43 43 H 1.08000 * 125.83264 * 0.02562 * 25 24 23 44 44 H 1.08000 * 126.21716 * 359.97438 * 29 24 23 45 45 H 1.09004 * 110.24884 * 223.98670 * 30 23 21 46 46 H 1.09007 * 110.24556 * 101.98493 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2069 7 1 3.6466 -1.8439 3.0517 8 6 5.5670 -1.5388 2.1511 9 7 6.2216 -1.0455 1.1213 10 14 6.4998 -2.3736 3.5377 11 1 5.5394 -2.8401 4.5698 12 1 7.2507 -3.5362 2.9994 13 1 7.4508 -1.4087 4.1458 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7933 -0.0356 -2.0833 17 8 3.0859 1.1256 -1.8915 18 6 3.2905 -0.7443 -3.3169 19 1 2.4593 -1.1549 -3.8901 20 6 4.3085 -1.8483 -2.9483 21 6 5.3306 -1.7974 -4.0624 22 8 6.1369 -2.6704 -4.3060 23 7 5.2159 -0.6437 -4.7427 24 6 6.0155 -0.2892 -5.8456 25 6 5.9236 0.8997 -6.5841 26 7 6.8314 0.8704 -7.5257 27 7 7.5283 -0.3409 -7.4295 28 1 8.2537 -0.6295 -8.0051 29 6 7.0086 -1.0396 -6.3873 30 6 4.1501 0.1988 -4.1875 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.7516 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2952 36 1 3.9824 -0.4628 0.4317 37 1 7.1882 -1.1157 1.0822 38 1 2.4158 -2.7377 -0.9715 39 1 0.6905 -2.3002 -0.9845 40 1 1.6238 -2.2853 -2.5001 41 1 4.7782 -1.6294 -1.9893 42 1 3.8213 -2.8231 -2.9218 43 1 5.2254 1.7037 -6.4039 44 1 7.3278 -2.0148 -6.0503 45 1 3.5481 0.6237 -4.9908 46 1 4.5775 0.9927 -3.5749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268062810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:33 Heat of formation + Delta-G solvation = 9.500557 kcal Electronic energy + Delta-G solvation = -29946.702403 eV Core-core repulsion = 25872.953395 eV Total energy + Delta-G solvation = -4073.749008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.60567 -41.60648 -40.44305 -38.03346 -37.26579 -35.82970 -34.45504 -33.16010 -32.33596 -31.67014 -29.59557 -28.85407 -27.74935 -27.30948 -25.11727 -24.30224 -23.76211 -22.35537 -21.60730 -20.45984 -19.94196 -19.22327 -19.05397 -18.56198 -17.47731 -17.44081 -16.75561 -16.49728 -16.24131 -16.03786 -15.58100 -15.48635 -15.33010 -15.20306 -14.92018 -14.68934 -14.50148 -14.24781 -13.87093 -13.79866 -13.72088 -13.61478 -13.23260 -12.92740 -12.88290 -12.78870 -12.54902 -12.48811 -12.39616 -12.08828 -12.07592 -11.75824 -11.65184 -11.39244 -11.15761 -10.96390 -10.71699 -10.64144 -9.50671 -8.95539 -8.78595 -7.92138 -5.19908 0.70490 1.16014 1.46179 1.46542 1.51557 1.56356 1.62938 1.99343 2.03871 2.22645 2.56544 3.09711 3.28270 3.42325 3.64075 3.75680 3.88812 3.90900 3.97842 4.08708 4.19009 4.38216 4.43692 4.45029 4.45826 4.53874 4.54704 4.63151 4.76090 4.81681 4.87450 4.93468 4.96541 5.00905 5.07573 5.14404 5.23857 5.40287 5.51739 5.71395 5.74141 5.91289 6.26451 6.27895 6.50762 6.56523 6.99104 7.23789 7.36127 8.13939 8.36075 9.30314 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.003798 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.999392 B = 7369.606059 C = 9124.820009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.130 3.870 3 H 0.069 0.931 4 C 0.140 3.860 5 N -0.740 5.740 6 C -0.237 4.237 7 H 0.077 0.923 8 C -0.072 4.072 9 N -0.965 5.965 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.296 1.296 13 H -0.300 1.300 14 N -0.591 5.591 15 C 0.069 3.931 16 C 0.522 3.478 17 O -0.577 6.577 18 C -0.103 4.103 19 H 0.164 0.836 20 C -0.131 4.131 21 C 0.514 3.486 22 O -0.558 6.558 23 N -0.529 5.529 24 C -0.013 4.013 25 C 0.047 3.953 26 N -0.296 5.296 27 N -0.462 5.462 28 H 0.458 0.542 29 C 0.038 3.962 30 C 0.118 3.882 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.373 0.627 37 H 0.246 0.754 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.135 0.865 43 H 0.213 0.787 44 H 0.187 0.813 45 H 0.126 0.874 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -0.970 -16.231 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.088 0.912 4 C 0.013 3.987 5 N -0.382 5.382 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.265 4.265 9 N -0.616 5.616 10 Si 0.796 3.204 11 H -0.187 1.187 12 H -0.224 1.224 13 H -0.227 1.227 14 N -0.322 5.322 15 C -0.073 4.073 16 C 0.311 3.689 17 O -0.457 6.457 18 C -0.124 4.124 19 H 0.182 0.818 20 C -0.171 4.171 21 C 0.303 3.697 22 O -0.437 6.437 23 N -0.255 5.255 24 C -0.116 4.116 25 C -0.141 4.141 26 N -0.119 5.119 27 N -0.176 5.176 28 H 0.306 0.694 29 C -0.111 4.111 30 C -0.004 4.004 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.205 0.795 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.153 0.847 43 H 0.230 0.770 44 H 0.204 0.796 45 H 0.144 0.856 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.845 -0.284 -17.054 20.212 hybrid contribution 1.474 -0.807 1.416 2.198 sum -9.370 -1.092 -15.638 18.263 Atomic orbital electron populations 1.21969 0.91219 1.03690 1.03196 1.21266 0.96050 0.96393 0.83666 0.91233 1.21229 0.84063 0.97903 0.95494 1.42487 1.02009 1.69687 1.24045 1.19624 0.89754 1.27920 0.99564 0.90554 1.25459 0.97528 1.03211 1.00267 1.69836 1.06629 1.52903 1.32193 0.85184 0.78655 0.77326 0.79277 1.18729 1.22373 1.22726 1.47715 1.49623 1.13432 1.21468 1.22084 1.01950 0.79665 1.03596 1.20417 0.77417 0.86333 0.84781 1.90692 1.58444 1.19006 1.77594 1.22205 0.99711 0.95649 0.94848 0.81813 1.22238 0.95526 1.02133 0.97238 1.21177 0.84650 0.80830 0.83006 1.90624 1.40368 1.42029 1.70651 1.45219 1.34035 1.18457 1.27745 1.17900 1.00221 0.98009 0.95423 1.24076 0.99311 0.97666 0.93041 1.77212 1.09249 1.02313 1.23129 1.46144 1.31382 1.13477 1.26557 0.69439 1.22581 0.96874 0.99726 0.91905 1.22172 0.87565 0.92525 0.98108 0.90319 0.90583 0.91335 0.95618 0.94516 0.79548 0.94546 0.93819 0.88761 0.87912 0.89736 0.84684 0.77010 0.79579 0.85597 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.17 71.98 0.66 -2.11 16 2 C 0.13 3.87 2.80 44.99 0.13 4.00 16 3 H 0.07 2.53 6.90 -2.38 -0.02 2.51 16 4 C 0.14 5.17 5.55 86.38 0.48 5.65 16 5 N -0.74 -36.62 5.43 -343.45 -1.87 -38.49 16 6 C -0.24 -12.99 9.99 84.03 0.84 -12.15 16 7 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 9 N -0.96 -59.99 13.06 21.65 0.28 -59.70 16 10 Si 0.97 46.73 29.55 68.60 2.03 48.75 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 13 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 14 N -0.59 -15.98 2.24 -822.58 -1.85 -17.82 16 15 C 0.07 1.34 8.36 127.77 1.07 2.41 16 16 C 0.52 15.53 6.66 87.66 0.58 16.11 16 17 O -0.58 -22.12 14.83 -3.04 -0.05 -22.17 16 18 C -0.10 -2.24 2.55 -10.48 -0.03 -2.27 16 19 H 0.16 1.97 7.24 -2.39 -0.02 1.95 16 20 C -0.13 -3.64 5.48 30.59 0.17 -3.47 16 21 C 0.51 16.17 7.98 87.90 0.70 16.87 16 22 O -0.56 -20.83 15.64 -3.12 -0.05 -20.88 16 23 N -0.53 -14.19 3.16 -628.35 -1.99 -16.17 16 24 C -0.01 -0.34 6.80 37.62 0.26 -0.08 16 25 C 0.05 1.04 11.53 85.33 0.98 2.03 16 26 N -0.30 -6.90 12.69 -56.77 -0.72 -7.62 16 27 N -0.46 -9.37 7.40 -56.82 -0.42 -9.79 16 28 H 0.46 5.98 8.96 -213.34 -1.91 4.07 16 29 C 0.04 0.95 11.18 83.50 0.93 1.88 16 30 C 0.12 2.69 6.29 86.83 0.55 3.23 16 31 H 0.08 1.24 6.66 -2.39 -0.02 1.22 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.04 1.26 7.84 -2.39 -0.02 1.24 16 36 H 0.37 20.27 7.06 -92.71 -0.65 19.62 16 37 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.41 6.43 -2.39 -0.02 1.39 16 40 H 0.10 1.22 6.10 -2.39 -0.01 1.20 16 41 H 0.08 3.25 7.89 -2.39 -0.02 3.24 16 42 H 0.14 2.99 7.56 -2.38 -0.02 2.97 16 43 H 0.21 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.19 4.80 6.51 -2.91 -0.02 4.79 16 45 H 0.13 1.88 8.13 -2.38 -0.02 1.86 16 46 H 0.07 2.15 6.96 -2.38 -0.02 2.13 16 Total: -1.00 -81.59 376.18 1.63 -79.96 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -1.53 Total: 35.51 kcal Atomic # 6 Polarization: 20.62 SS G_CDS: 7.79 Total: 28.40 kcal Atomic # 7 Polarization: -143.03 SS G_CDS: -6.56 Total: -149.59 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.09 Total: -43.04 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -81.59 1.63 -79.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268062810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.462 kcal (2) G-P(sol) polarization free energy of solvation -81.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds