Wall clock time and date at job start Tue Mar 31 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47142 * 2 1 4 4 C 1.53005 * 109.46671 * 240.00199 * 2 1 3 5 5 N 1.46500 * 109.47066 * 184.99851 * 4 2 1 6 6 C 1.46499 * 120.00073 * 270.00273 * 5 4 2 7 7 C 1.36938 * 119.99882 * 89.99957 * 5 4 2 8 8 H 1.08001 * 120.00164 * 20.01619 * 7 5 4 9 9 C 1.38816 * 119.99782 * 200.02048 * 7 5 4 10 10 N 1.31614 * 120.00387 * 15.07159 * 9 7 5 11 11 Si 1.86804 * 119.99751 * 195.07533 * 9 7 5 12 12 H 1.48500 * 109.47215 * 94.97678 * 11 9 7 13 13 H 1.48496 * 109.46747 * 214.98187 * 11 9 7 14 14 H 1.48500 * 109.47034 * 334.97953 * 11 9 7 15 15 N 1.46498 * 109.47388 * 120.00653 * 2 1 3 16 16 C 1.34787 * 119.99753 * 274.99852 * 15 2 1 17 17 O 1.21285 * 119.99752 * 359.97438 * 16 15 2 18 18 C 1.50692 * 119.99839 * 179.97438 * 16 15 2 19 19 H 1.09004 * 109.51071 * 299.99806 * 18 16 15 20 20 C 1.53103 * 109.50696 * 60.08779 * 18 16 15 21 21 O 1.43019 * 109.25337 * 176.73356 * 20 18 16 22 22 C 1.43018 * 113.77875 * 301.39825 * 21 20 18 23 23 C 1.53094 * 109.25966 * 58.64652 * 22 21 20 24 24 N 1.47015 * 109.50545 * 179.91180 * 18 16 15 25 25 C 1.46903 * 111.00058 * 57.67188 * 24 18 16 26 26 C 1.52997 * 109.46895 * 163.93182 * 25 24 18 27 27 F 1.39901 * 109.47477 * 293.11720 * 26 25 24 28 28 F 1.39891 * 109.47363 * 53.12263 * 26 25 24 29 29 H 1.08992 * 109.47130 * 59.99855 * 1 2 3 30 30 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46637 * 299.99668 * 1 2 3 32 32 H 1.09001 * 109.47022 * 305.00077 * 4 2 1 33 33 H 1.08998 * 109.46710 * 65.00047 * 4 2 1 34 34 H 1.09005 * 109.47361 * 94.61745 * 6 5 4 35 35 H 1.08999 * 109.47129 * 214.61776 * 6 5 4 36 36 H 1.08994 * 109.47261 * 334.62513 * 6 5 4 37 37 H 0.96999 * 120.00455 * 180.02562 * 10 9 7 38 38 H 0.96989 * 120.00378 * 94.99464 * 15 2 1 39 39 H 1.08991 * 109.50420 * 296.71614 * 20 18 16 40 40 H 1.08998 * 109.50322 * 56.84802 * 20 18 16 41 41 H 1.09000 * 109.50401 * 298.71095 * 22 21 20 42 42 H 1.09005 * 109.50428 * 178.58403 * 22 21 20 43 43 H 1.09003 * 109.50995 * 183.21869 * 23 22 21 44 44 H 1.08997 * 109.50787 * 63.08535 * 23 22 21 45 45 H 1.08999 * 109.47110 * 283.93652 * 25 24 18 46 46 H 1.08997 * 109.46810 * 43.93383 * 25 24 18 47 47 H 1.09004 * 109.46939 * 173.11950 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1908 6 6 4.3343 0.2340 -1.7614 7 6 4.0849 -1.9159 -0.6025 8 1 3.5214 -2.8283 -0.4750 9 6 5.4023 -1.8475 -0.1701 10 7 5.9949 -0.6788 -0.0475 11 14 6.3339 -3.4145 0.2376 12 1 7.1171 -3.8474 -0.9475 13 1 7.2553 -3.1609 1.3743 14 1 5.3699 -4.4808 0.6103 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3571 17 8 1.8592 1.1585 2.4115 18 6 2.6490 -0.7290 3.5876 19 1 1.9765 -1.5510 3.8330 20 6 4.0533 -1.2788 3.3235 21 8 4.5547 -1.8853 4.5177 22 6 4.6193 -0.9935 5.6340 23 6 3.2204 -0.4418 5.9212 24 7 2.7010 0.2154 4.7130 25 6 1.3809 0.8095 4.9631 26 6 1.3676 1.4576 6.3490 27 9 1.4771 0.4653 7.3290 28 9 2.4447 2.3434 6.4599 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6053 -1.7198 -1.2952 33 1 1.7515 -0.1582 -2.1370 34 1 4.6081 0.9418 -0.9789 35 1 5.2370 -0.2036 -2.1876 36 1 3.7785 0.7531 -2.5423 37 1 6.9155 -0.6310 0.2543 38 1 2.2491 -1.6318 1.1525 39 1 4.0093 -2.0223 2.5277 40 1 4.7130 -0.4640 3.0252 41 1 5.2951 -0.1700 5.4033 42 1 4.9851 -1.5313 6.5087 43 1 3.2744 0.2819 6.7345 44 1 2.5576 -1.2595 6.2041 45 1 1.1735 1.5659 4.2062 46 1 0.6183 0.0320 4.9183 47 1 0.4336 2.0024 6.4864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268737787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:49 Heat of formation + Delta-G solvation = -133.611883 kcal Electronic energy + Delta-G solvation = -32324.479667 eV Core-core repulsion = 27793.835651 eV Total energy + Delta-G solvation = -4530.644015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.17301 -46.98627 -40.16155 -38.37911 -36.48535 -35.44843 -33.97960 -32.08546 -30.89987 -30.32079 -29.62948 -26.23375 -26.09102 -25.64194 -24.61338 -22.37827 -22.11991 -21.10770 -19.97737 -19.63830 -18.01335 -17.42148 -16.96854 -16.69508 -16.36105 -15.95899 -15.64657 -15.36054 -14.94644 -14.81547 -14.56579 -14.25594 -14.07538 -13.76869 -13.67093 -13.53048 -13.35910 -13.09036 -12.89375 -12.80317 -12.42637 -12.13323 -12.05868 -11.79119 -11.71377 -11.44597 -11.36265 -11.32517 -10.93307 -10.84204 -10.71544 -10.45597 -10.29009 -10.21274 -10.05498 -9.85456 -9.58984 -9.04016 -8.59478 -8.40450 -8.24269 -6.84768 -5.77675 -3.22214 3.10487 3.34576 3.41795 3.42928 3.46404 3.73799 3.84343 4.14583 4.17762 4.44111 4.53733 4.76939 5.02494 5.05747 5.18964 5.22991 5.30101 5.34283 5.43128 5.46148 5.49143 5.61241 5.78337 5.80635 5.86926 5.93044 5.97080 6.07371 6.11873 6.19311 6.39435 6.40678 6.43564 6.71037 6.78139 6.83809 6.93382 7.21591 7.35364 7.35946 7.66346 7.76183 8.19536 8.31011 8.83908 9.16052 9.80666 10.30114 11.25749 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.004876 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.031840 B = 5740.836300 C = 7246.449410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.261 4.261 8 H 0.066 0.934 9 C 0.011 3.989 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.289 1.289 13 H -0.288 1.288 14 H -0.278 1.278 15 N -0.684 5.684 16 C 0.526 3.474 17 O -0.544 6.544 18 C 0.035 3.965 19 H 0.068 0.932 20 C 0.081 3.919 21 O -0.382 6.382 22 C 0.060 3.940 23 C 0.004 3.996 24 N -0.506 5.506 25 C -0.003 4.003 26 C 0.260 3.740 27 F -0.210 7.210 28 F -0.193 7.193 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.044 0.956 36 H -0.004 1.004 37 H 0.253 0.747 38 H 0.403 0.597 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.045 0.955 45 H 0.138 0.862 46 H 0.057 0.943 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 1.094 9.296 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.391 4.391 8 H 0.084 0.916 9 C -0.188 4.188 10 N -0.537 5.537 11 Si 0.718 3.282 12 H -0.216 1.216 13 H -0.214 1.214 14 H -0.203 1.203 15 N -0.334 5.334 16 C 0.311 3.689 17 O -0.423 6.423 18 C -0.077 4.077 19 H 0.086 0.914 20 C 0.003 3.997 21 O -0.300 6.300 22 C -0.017 4.017 23 C -0.124 4.124 24 N -0.232 5.232 25 C -0.131 4.131 26 C 0.206 3.794 27 F -0.191 7.191 28 F -0.175 7.175 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.064 0.936 38 H 0.239 0.761 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.064 0.936 45 H 0.156 0.844 46 H 0.075 0.925 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.316 2.146 9.251 14.022 hybrid contribution 0.205 -1.618 0.607 1.740 sum -10.112 0.528 9.859 14.132 Atomic orbital electron populations 1.22153 0.96943 1.01202 1.01488 1.21854 0.91682 0.98469 0.86910 0.90423 1.21174 0.86014 0.97876 0.93562 1.43896 0.98835 1.22664 1.66572 1.20789 0.92946 0.90410 0.93947 1.19063 0.95848 0.89934 1.34221 0.91586 1.24886 0.98357 0.95987 0.99616 1.70085 1.12618 1.21662 1.49316 0.86503 0.80534 0.83360 0.77787 1.21644 1.21433 1.20347 1.45719 1.64858 1.14324 1.08474 1.19876 0.77656 0.87056 0.84322 1.90530 1.51344 1.15600 1.84797 1.22375 1.00355 0.93718 0.91228 0.91425 1.22661 0.90571 0.99582 0.86858 1.87999 1.85207 1.37255 1.19548 1.22699 0.95385 0.93924 0.89697 1.23379 0.97261 0.98692 0.93031 1.62046 1.23878 1.32686 1.04582 1.23670 0.91441 1.02069 0.95921 1.22076 0.89231 0.81128 0.86931 1.92941 1.96667 1.63603 1.65901 1.93004 1.59032 1.68854 1.96565 0.92213 0.93055 0.93118 0.93364 0.92968 0.95333 0.93752 0.98560 0.93650 0.76073 0.86789 0.90570 0.92109 0.88616 0.88203 0.93629 0.84439 0.92500 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 2 C 0.12 2.07 2.88 -67.93 -0.20 1.87 16 3 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 4 C 0.14 2.58 5.36 -4.04 -0.02 2.56 16 5 N -0.60 -13.49 2.82 -181.12 -0.51 -14.00 16 6 C 0.16 3.85 9.02 59.85 0.54 4.39 16 7 C -0.26 -6.28 8.02 -15.06 -0.12 -6.40 16 8 H 0.07 1.54 7.86 -52.49 -0.41 1.13 16 9 C 0.01 0.29 5.06 -17.43 -0.09 0.20 16 10 N -0.89 -24.19 10.66 55.49 0.59 -23.60 16 11 Si 0.89 20.57 29.58 -169.99 -5.03 15.55 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 N -0.68 -12.21 4.39 -53.80 -0.24 -12.45 16 16 C 0.53 9.72 6.85 -10.98 -0.08 9.65 16 17 O -0.54 -11.18 13.43 5.55 0.07 -11.11 16 18 C 0.04 0.59 2.31 -68.75 -0.16 0.43 16 19 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 20 C 0.08 1.51 6.17 37.21 0.23 1.74 16 21 O -0.38 -6.84 10.82 -35.23 -0.38 -7.22 16 22 C 0.06 0.90 7.01 37.21 0.26 1.16 16 23 C 0.00 0.06 4.16 -3.71 -0.02 0.04 16 24 N -0.51 -8.05 4.38 -227.73 -1.00 -9.05 16 25 C 0.00 -0.04 4.98 -3.82 -0.02 -0.06 16 26 C 0.26 2.93 5.13 37.16 0.19 3.12 16 27 F -0.21 -2.48 13.97 2.25 0.03 -2.45 16 28 F -0.19 -2.69 16.18 2.25 0.04 -2.65 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 34 H 0.03 0.74 7.44 -51.93 -0.39 0.36 16 35 H 0.04 1.12 7.16 -51.93 -0.37 0.75 16 36 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 37 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.40 7.15 6.89 -40.82 -0.28 6.87 16 39 H 0.11 2.23 7.67 -51.93 -0.40 1.83 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.10 1.37 4.95 -51.93 -0.26 1.11 16 44 H 0.05 0.63 7.80 -51.93 -0.41 0.22 16 45 H 0.14 2.09 5.77 -51.93 -0.30 1.79 16 46 H 0.06 0.69 7.98 -51.93 -0.41 0.27 16 47 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -29.24 372.25 -7.30 -36.54 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.37 Total: 8.01 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 0.88 Total: 16.82 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -1.15 Total: -59.10 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.31 Total: -18.33 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.24 -7.30 -36.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268737787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.075 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds