Wall clock time and date at job start Tue Mar 31 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47142 * 2 1 4 4 C 1.53005 * 109.46671 * 240.00199 * 2 1 3 5 5 N 1.46500 * 109.47066 * 184.99851 * 4 2 1 6 6 C 1.46499 * 120.00073 * 270.00273 * 5 4 2 7 7 C 1.36938 * 119.99882 * 89.99957 * 5 4 2 8 8 H 1.08001 * 120.00164 * 20.01619 * 7 5 4 9 9 C 1.38816 * 119.99782 * 200.02048 * 7 5 4 10 10 N 1.31614 * 120.00387 * 15.07159 * 9 7 5 11 11 Si 1.86804 * 119.99751 * 195.07533 * 9 7 5 12 12 H 1.48500 * 109.47215 * 94.97678 * 11 9 7 13 13 H 1.48496 * 109.46747 * 214.98187 * 11 9 7 14 14 H 1.48500 * 109.47034 * 334.97953 * 11 9 7 15 15 N 1.46498 * 109.47388 * 120.00653 * 2 1 3 16 16 C 1.34787 * 119.99753 * 274.99852 * 15 2 1 17 17 O 1.21285 * 119.99752 * 359.97438 * 16 15 2 18 18 C 1.50692 * 119.99839 * 179.97438 * 16 15 2 19 19 H 1.09004 * 109.51071 * 299.99806 * 18 16 15 20 20 C 1.53103 * 109.50696 * 60.08779 * 18 16 15 21 21 O 1.43019 * 109.25337 * 176.73356 * 20 18 16 22 22 C 1.43018 * 113.77875 * 301.39825 * 21 20 18 23 23 C 1.53094 * 109.25966 * 58.64652 * 22 21 20 24 24 N 1.47015 * 109.50545 * 179.91180 * 18 16 15 25 25 C 1.46903 * 111.00058 * 57.67188 * 24 18 16 26 26 C 1.52997 * 109.46895 * 163.93182 * 25 24 18 27 27 F 1.39901 * 109.47477 * 293.11720 * 26 25 24 28 28 F 1.39891 * 109.47363 * 53.12263 * 26 25 24 29 29 H 1.08992 * 109.47130 * 59.99855 * 1 2 3 30 30 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46637 * 299.99668 * 1 2 3 32 32 H 1.09001 * 109.47022 * 305.00077 * 4 2 1 33 33 H 1.08998 * 109.46710 * 65.00047 * 4 2 1 34 34 H 1.09005 * 109.47361 * 94.61745 * 6 5 4 35 35 H 1.08999 * 109.47129 * 214.61776 * 6 5 4 36 36 H 1.08994 * 109.47261 * 334.62513 * 6 5 4 37 37 H 0.96999 * 120.00455 * 180.02562 * 10 9 7 38 38 H 0.96989 * 120.00378 * 94.99464 * 15 2 1 39 39 H 1.08991 * 109.50420 * 296.71614 * 20 18 16 40 40 H 1.08998 * 109.50322 * 56.84802 * 20 18 16 41 41 H 1.09000 * 109.50401 * 298.71095 * 22 21 20 42 42 H 1.09005 * 109.50428 * 178.58403 * 22 21 20 43 43 H 1.09003 * 109.50995 * 183.21869 * 23 22 21 44 44 H 1.08997 * 109.50787 * 63.08535 * 23 22 21 45 45 H 1.08999 * 109.47110 * 283.93652 * 25 24 18 46 46 H 1.08997 * 109.46810 * 43.93383 * 25 24 18 47 47 H 1.09004 * 109.46939 * 173.11950 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1908 6 6 4.3343 0.2340 -1.7614 7 6 4.0849 -1.9159 -0.6025 8 1 3.5214 -2.8283 -0.4750 9 6 5.4023 -1.8475 -0.1701 10 7 5.9949 -0.6788 -0.0475 11 14 6.3339 -3.4145 0.2376 12 1 7.1171 -3.8474 -0.9475 13 1 7.2553 -3.1609 1.3743 14 1 5.3699 -4.4808 0.6103 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3571 17 8 1.8592 1.1585 2.4115 18 6 2.6490 -0.7290 3.5876 19 1 1.9765 -1.5510 3.8330 20 6 4.0533 -1.2788 3.3235 21 8 4.5547 -1.8853 4.5177 22 6 4.6193 -0.9935 5.6340 23 6 3.2204 -0.4418 5.9212 24 7 2.7010 0.2154 4.7130 25 6 1.3809 0.8095 4.9631 26 6 1.3676 1.4576 6.3490 27 9 1.4771 0.4653 7.3290 28 9 2.4447 2.3434 6.4599 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6053 -1.7198 -1.2952 33 1 1.7515 -0.1582 -2.1370 34 1 4.6081 0.9418 -0.9789 35 1 5.2370 -0.2036 -2.1876 36 1 3.7785 0.7531 -2.5423 37 1 6.9155 -0.6310 0.2543 38 1 2.2491 -1.6318 1.1525 39 1 4.0093 -2.0223 2.5277 40 1 4.7130 -0.4640 3.0252 41 1 5.2951 -0.1700 5.4033 42 1 4.9851 -1.5313 6.5087 43 1 3.2744 0.2819 6.7345 44 1 2.5576 -1.2595 6.2041 45 1 1.1735 1.5659 4.2062 46 1 0.6183 0.0320 4.9183 47 1 0.4336 2.0024 6.4864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268737787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:48 Heat of formation + Delta-G solvation = -154.312631 kcal Electronic energy + Delta-G solvation = -32325.377318 eV Core-core repulsion = 27793.835651 eV Total energy + Delta-G solvation = -4531.541667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.10349 -47.93959 -41.53597 -39.78615 -38.06389 -36.79491 -35.61580 -33.58960 -32.58129 -31.48329 -30.94625 -28.00523 -27.33875 -27.27577 -25.97087 -23.69648 -23.41341 -22.61980 -21.39327 -21.05998 -19.13344 -18.63351 -18.37225 -18.02227 -17.70110 -17.29875 -16.95753 -16.74277 -16.57046 -16.16979 -15.83005 -15.61071 -15.53478 -15.34868 -14.95808 -14.81032 -14.62195 -14.44821 -14.33590 -13.99927 -13.79367 -13.50702 -13.20868 -13.12750 -13.04155 -13.01343 -12.79972 -12.66956 -12.58534 -12.49738 -12.13061 -12.08985 -11.91148 -11.90042 -11.63781 -11.49282 -10.92266 -10.55072 -10.46411 -9.83018 -9.46502 -8.74464 -7.73848 -5.17673 1.47620 1.52377 1.58579 1.64723 2.16544 2.53573 2.55720 2.83581 2.86437 3.28347 3.41884 3.59033 3.68120 3.71764 3.83972 3.87494 3.88611 3.98040 4.17959 4.19502 4.26058 4.44834 4.48743 4.52971 4.58731 4.66974 4.74738 4.78268 4.80181 4.88682 4.91212 4.96120 5.04751 5.21582 5.37809 5.44465 5.57332 5.70326 5.77867 5.79213 5.81855 5.99134 6.37238 6.74388 7.21232 7.39431 7.94663 8.40201 9.29043 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.004876 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.031840 B = 5740.836300 C = 7246.449410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.042 0.958 4 C 0.141 3.859 5 N -0.610 5.610 6 C 0.179 3.821 7 C -0.244 4.244 8 H 0.081 0.919 9 C -0.034 4.034 10 N -0.926 5.926 11 Si 0.934 3.066 12 H -0.297 1.297 13 H -0.307 1.307 14 H -0.259 1.259 15 N -0.684 5.684 16 C 0.522 3.478 17 O -0.568 6.568 18 C 0.046 3.954 19 H 0.091 0.909 20 C 0.094 3.906 21 O -0.392 6.392 22 C 0.053 3.947 23 C 0.013 3.987 24 N -0.531 5.531 25 C -0.003 4.003 26 C 0.262 3.738 27 F -0.211 7.211 28 F -0.211 7.211 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.073 0.927 34 H -0.008 1.008 35 H 0.018 0.982 36 H 0.027 0.973 37 H 0.240 0.760 38 H 0.405 0.595 39 H 0.103 0.897 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 -0.163 9.942 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.060 0.940 4 C 0.014 3.986 5 N -0.332 5.332 6 C 0.034 3.966 7 C -0.374 4.374 8 H 0.099 0.901 9 C -0.230 4.230 10 N -0.573 5.573 11 Si 0.765 3.235 12 H -0.225 1.225 13 H -0.235 1.235 14 H -0.183 1.183 15 N -0.333 5.333 16 C 0.308 3.692 17 O -0.449 6.449 18 C -0.066 4.066 19 H 0.108 0.892 20 C 0.016 3.984 21 O -0.311 6.311 22 C -0.023 4.023 23 C -0.114 4.114 24 N -0.257 5.257 25 C -0.131 4.131 26 C 0.208 3.792 27 F -0.192 7.192 28 F -0.193 7.193 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.010 0.990 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.241 0.759 39 H 0.121 0.879 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.107 0.860 9.889 16.442 hybrid contribution 1.016 -1.196 0.376 1.614 sum -12.091 -0.336 10.266 15.865 Atomic orbital electron populations 1.22014 0.93570 1.02647 1.02143 1.21729 0.94161 0.96190 0.86367 0.94011 1.21389 0.83171 0.99451 0.94577 1.44118 1.00854 1.21995 1.66274 1.20476 0.92745 0.89971 0.93431 1.19380 0.95527 0.90706 1.31751 0.90141 1.25368 0.99459 0.97345 1.00815 1.70249 1.12058 1.23261 1.51704 0.85743 0.79542 0.81828 0.76401 1.22522 1.23483 1.18271 1.45772 1.64644 1.14322 1.08559 1.20189 0.77250 0.86838 0.84960 1.90526 1.52433 1.16617 1.85279 1.22198 0.99014 0.94330 0.91051 0.89170 1.22307 0.91125 0.97722 0.87239 1.87975 1.85344 1.37943 1.19814 1.22960 0.96031 0.93718 0.89629 1.23346 0.96627 0.99035 0.92439 1.61981 1.25880 1.32933 1.04943 1.23640 0.90544 1.01987 0.96906 1.22376 0.90302 0.80942 0.85549 1.92933 1.96708 1.63826 1.65742 1.92971 1.60305 1.69449 1.96565 0.90223 0.91121 0.93846 0.91319 0.90915 0.98965 0.96361 0.95503 0.94994 0.75926 0.87919 0.94865 0.93617 0.85457 0.87482 0.92446 0.86367 0.90711 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.48 71.98 0.68 -2.94 16 2 C 0.12 4.12 2.88 45.00 0.13 4.25 16 3 H 0.04 1.71 7.58 -2.39 -0.02 1.70 16 4 C 0.14 4.77 5.36 86.38 0.46 5.23 16 5 N -0.61 -27.09 2.82 -726.93 -2.05 -29.14 16 6 C 0.18 8.52 9.02 127.77 1.15 9.68 16 7 C -0.24 -11.54 8.02 84.03 0.67 -10.86 16 8 H 0.08 3.57 7.86 -2.91 -0.02 3.55 16 9 C -0.03 -1.73 5.06 84.86 0.43 -1.31 16 10 N -0.93 -52.32 10.66 21.65 0.23 -52.09 16 11 Si 0.93 42.82 29.58 68.60 2.03 44.85 16 12 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 N -0.68 -23.89 4.39 -442.51 -1.94 -25.83 16 16 C 0.52 19.26 6.85 87.65 0.60 19.86 16 17 O -0.57 -23.63 13.43 -3.04 -0.04 -23.67 16 18 C 0.05 1.52 2.31 44.18 0.10 1.62 16 19 H 0.09 2.56 8.13 -2.38 -0.02 2.54 16 20 C 0.09 3.59 6.17 72.02 0.44 4.04 16 21 O -0.39 -13.98 10.82 -148.98 -1.61 -15.60 16 22 C 0.05 1.55 7.01 72.01 0.50 2.05 16 23 C 0.01 0.34 4.16 86.31 0.36 0.70 16 24 N -0.53 -16.52 4.38 -874.39 -3.83 -20.35 16 25 C 0.00 -0.08 4.98 86.30 0.43 0.35 16 26 C 0.26 5.26 5.13 71.98 0.37 5.63 16 27 F -0.21 -4.39 13.97 44.97 0.63 -3.76 16 28 F -0.21 -5.63 16.18 44.97 0.73 -4.90 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 33 H 0.07 2.20 7.86 -2.39 -0.02 2.18 16 34 H -0.01 -0.44 7.44 -2.38 -0.02 -0.46 16 35 H 0.02 0.93 7.16 -2.39 -0.02 0.91 16 36 H 0.03 1.08 7.84 -2.39 -0.02 1.06 16 37 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.40 13.84 6.89 -92.72 -0.64 13.20 16 39 H 0.10 4.09 7.67 -2.39 -0.02 4.07 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.11 2.75 4.95 -2.39 -0.01 2.74 16 44 H 0.06 1.43 7.80 -2.39 -0.02 1.41 16 45 H 0.12 3.51 5.77 -2.39 -0.01 3.50 16 46 H 0.07 1.61 7.98 -2.39 -0.02 1.59 16 47 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.70 372.25 0.82 -64.88 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.34 Total: 27.31 kcal Atomic # 6 Polarization: 31.96 SS G_CDS: 6.34 Total: 38.30 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -7.59 Total: -127.41 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.65 Total: -39.26 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 1.36 Total: -8.66 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -65.70 0.82 -64.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268737787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.437 kcal (2) G-P(sol) polarization free energy of solvation -65.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds