Wall clock time and date at job start Tue Mar 31 2020 18:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47691 * 2 1 4 4 C 1.53002 * 109.47420 * 239.99581 * 2 1 3 5 5 N 1.46496 * 109.47576 * 184.99931 * 4 2 1 6 6 C 1.46499 * 120.00265 * 270.00437 * 5 4 2 7 7 C 1.36939 * 119.99890 * 89.99732 * 5 4 2 8 8 H 1.08005 * 119.99989 * 344.63427 * 7 5 4 9 9 C 1.38811 * 119.99954 * 164.62442 * 7 5 4 10 10 N 1.31618 * 119.99993 * 319.42030 * 9 7 5 11 11 Si 1.86800 * 120.00061 * 139.42025 * 9 7 5 12 12 H 1.48497 * 109.47297 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.46975 * 300.00372 * 11 9 7 14 14 H 1.48502 * 109.46815 * 60.00090 * 11 9 7 15 15 N 1.46508 * 109.47242 * 119.99682 * 2 1 3 16 16 C 1.34775 * 119.99877 * 275.00107 * 15 2 1 17 17 O 1.21283 * 120.00099 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99735 * 180.02562 * 16 15 2 19 19 H 1.08997 * 109.51082 * 33.53548 * 18 16 15 20 20 C 1.53108 * 109.50646 * 273.44844 * 18 16 15 21 21 O 1.43011 * 109.25831 * 183.21877 * 20 18 16 22 22 C 1.43009 * 113.74267 * 58.67121 * 21 20 18 23 23 C 1.53095 * 109.25920 * 301.33006 * 22 21 20 24 24 N 1.47009 * 109.50967 * 153.67127 * 18 16 15 25 25 C 1.46906 * 110.99887 * 302.32260 * 24 18 16 26 26 C 1.52991 * 109.47465 * 164.47269 * 25 24 18 27 27 F 1.39908 * 109.47380 * 305.63081 * 26 25 24 28 28 F 1.39897 * 109.47385 * 65.62665 * 26 25 24 29 29 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46932 * 300.00216 * 1 2 3 31 31 H 1.09000 * 109.47102 * 59.99943 * 1 2 3 32 32 H 1.09004 * 109.46873 * 65.00084 * 4 2 1 33 33 H 1.08997 * 109.46840 * 305.00390 * 4 2 1 34 34 H 1.09003 * 109.46984 * 272.05346 * 6 5 4 35 35 H 1.09002 * 109.46920 * 32.05093 * 6 5 4 36 36 H 1.08994 * 109.47116 * 152.05449 * 6 5 4 37 37 H 0.96996 * 120.00220 * 0.05324 * 10 9 7 38 38 H 0.96997 * 119.99373 * 94.99711 * 15 2 1 39 39 H 1.09004 * 109.50525 * 303.15460 * 20 18 16 40 40 H 1.08994 * 109.50209 * 63.27876 * 20 18 16 41 41 H 1.09004 * 109.50717 * 61.26066 * 22 21 20 42 42 H 1.08999 * 109.50942 * 181.39267 * 22 21 20 43 43 H 1.09003 * 109.51318 * 176.78349 * 23 22 21 44 44 H 1.09005 * 109.50553 * 296.86768 * 23 22 21 45 45 H 1.09001 * 109.47011 * 284.47936 * 25 24 18 46 46 H 1.09008 * 109.46888 * 44.46982 * 25 24 18 47 47 H 1.08999 * 109.47543 * 185.63193 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0849 -1.9159 -0.6021 8 1 3.4998 -2.5674 0.0301 9 6 5.4298 -2.1830 -0.8184 10 7 5.9478 -2.0240 -2.0179 11 14 6.5046 -2.7682 0.5929 12 1 7.8908 -2.9806 0.1045 13 1 6.5106 -1.7440 1.6682 14 1 5.9668 -4.0448 1.1282 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8590 1.1587 2.4115 18 6 2.6499 -0.7283 3.5875 19 1 3.3750 -1.4890 3.2979 20 6 1.4749 -1.3914 4.3112 21 8 1.9461 -1.9997 5.5167 22 6 2.5733 -1.0829 6.4173 23 6 3.7594 -0.4167 5.7150 24 7 3.2886 0.2423 4.4881 25 6 4.3883 0.9434 3.8119 26 6 4.7709 2.1875 4.6160 27 9 3.6345 2.9770 4.8225 28 9 5.3000 1.7997 5.8516 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2950 34 1 4.5122 0.0279 -2.8167 35 1 3.8246 1.1920 -1.6589 36 1 5.2869 0.2709 -1.2327 37 1 5.3899 -1.7194 -2.7506 38 1 2.2490 -1.6317 1.1527 39 1 0.7245 -0.6385 4.5526 40 1 1.0338 -2.1524 3.6676 41 1 1.8549 -0.3210 6.7200 42 1 2.9265 -1.6209 7.2970 43 1 4.2056 0.3244 6.3781 44 1 4.5029 -1.1722 5.4608 45 1 5.2501 0.2802 3.7366 46 1 4.0699 1.2403 2.8126 47 1 5.5165 2.7610 4.0653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268737788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:53 Heat of formation + Delta-G solvation = -145.192172 kcal Electronic energy + Delta-G solvation = -32130.379290 eV Core-core repulsion = 27599.233115 eV Total energy + Delta-G solvation = -4531.146174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.88087 -46.82282 -40.37205 -38.63960 -36.66341 -35.71575 -34.27600 -32.11883 -31.09814 -30.43095 -29.85026 -26.56900 -26.30554 -25.43069 -24.84547 -22.39647 -22.20907 -21.20010 -20.07740 -19.82083 -17.90121 -17.46767 -17.32449 -16.76916 -16.73999 -16.24848 -16.04640 -15.57216 -14.94258 -14.81177 -14.56731 -14.28225 -14.00476 -13.91975 -13.78782 -13.76878 -13.63231 -13.17988 -13.03083 -12.81213 -12.55728 -12.35575 -12.27688 -12.00543 -11.76779 -11.60713 -11.51961 -11.41056 -11.13617 -10.90167 -10.80869 -10.61588 -10.53760 -10.49555 -10.15625 -9.85913 -9.80719 -9.29057 -8.57664 -8.48402 -8.29324 -7.08354 -6.36272 -3.19900 2.89061 3.28380 3.35678 3.39254 3.56063 3.57312 3.85541 3.94734 4.26957 4.45268 4.56345 4.78848 4.87937 4.90579 4.97912 5.02650 5.03979 5.19633 5.23214 5.32558 5.45550 5.48550 5.51847 5.59455 5.64359 5.69546 5.75384 5.78301 5.84071 5.99517 6.07841 6.27628 6.34373 6.40051 6.59295 6.62796 6.76126 6.83399 6.96936 6.97553 7.02269 7.77894 8.02576 8.39858 8.65734 8.95096 9.73747 10.15486 11.00020 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.004947 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.137457 B = 5658.628239 C = 6320.128871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.076 0.924 4 C 0.143 3.857 5 N -0.600 5.600 6 C 0.136 3.864 7 C -0.373 4.373 8 H 0.060 0.940 9 C -0.012 4.012 10 N -0.889 5.889 11 Si 1.043 2.957 12 H -0.285 1.285 13 H -0.297 1.297 14 H -0.291 1.291 15 N -0.692 5.692 16 C 0.517 3.483 17 O -0.533 6.533 18 C 0.030 3.970 19 H 0.075 0.925 20 C 0.081 3.919 21 O -0.380 6.380 22 C 0.064 3.936 23 C -0.001 4.001 24 N -0.505 5.505 25 C -0.001 4.001 26 C 0.274 3.726 27 F -0.190 7.190 28 F -0.209 7.209 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.007 0.993 35 H 0.016 0.984 36 H 0.050 0.950 37 H 0.272 0.728 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 3.965 12.021 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.094 0.906 4 C 0.015 3.985 5 N -0.323 5.323 6 C -0.010 4.010 7 C -0.501 4.501 8 H 0.078 0.922 9 C -0.217 4.217 10 N -0.527 5.527 11 Si 0.873 3.127 12 H -0.211 1.211 13 H -0.225 1.225 14 H -0.218 1.218 15 N -0.343 5.343 16 C 0.301 3.699 17 O -0.409 6.409 18 C -0.082 4.082 19 H 0.093 0.907 20 C 0.003 3.997 21 O -0.298 6.298 22 C -0.013 4.013 23 C -0.129 4.129 24 N -0.231 5.231 25 C -0.130 4.130 26 C 0.220 3.780 27 F -0.171 7.171 28 F -0.191 7.191 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.133 0.867 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.033 4.471 12.626 14.309 hybrid contribution -0.662 -0.307 -0.685 1.001 sum -5.694 4.164 11.941 13.869 Atomic orbital electron populations 1.22123 0.96376 1.01516 1.01773 1.21808 0.92295 0.98069 0.86457 0.90614 1.21018 0.85716 0.98390 0.93369 1.43891 0.99183 1.20326 1.68888 1.20913 0.95025 0.88734 0.96302 1.19622 0.95600 1.07602 1.27269 0.92246 1.25502 0.96269 0.99975 0.99953 1.70833 1.42214 1.40590 0.99090 0.83806 0.76978 0.75784 0.76143 1.21111 1.22493 1.21808 1.46003 1.65239 1.14513 1.08575 1.19974 0.78536 0.87391 0.84043 1.90687 1.49886 1.15434 1.84929 1.22348 0.98860 0.94252 0.92778 0.90715 1.22507 0.93594 0.97568 0.86000 1.87999 1.77266 1.35088 1.29443 1.22694 0.93736 0.92753 0.92100 1.23308 0.97682 0.99097 0.92817 1.61925 1.28374 1.27592 1.05178 1.23343 0.94801 0.95016 0.99874 1.21880 0.83994 0.90971 0.81162 1.93017 1.53498 1.75212 1.95415 1.92852 1.86759 1.91805 1.47664 0.92825 0.92716 0.92122 0.93254 0.92883 0.97501 0.96536 0.93151 0.91742 0.75944 0.91506 0.87845 0.92037 0.88201 0.87347 0.93463 0.91387 0.86714 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.15 0.35 -1.84 16 2 C 0.12 2.02 2.88 -67.93 -0.20 1.82 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 4 C 0.14 2.61 5.33 -4.04 -0.02 2.59 16 5 N -0.60 -13.42 2.77 -181.12 -0.50 -13.92 16 6 C 0.14 3.03 9.06 59.85 0.54 3.57 16 7 C -0.37 -9.18 8.48 -15.06 -0.13 -9.31 16 8 H 0.06 1.43 6.66 -52.48 -0.35 1.08 16 9 C -0.01 -0.31 4.32 -17.43 -0.08 -0.38 16 10 N -0.89 -25.10 12.82 55.49 0.71 -24.39 16 11 Si 1.04 23.56 30.06 -169.99 -5.11 18.45 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.30 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 15 N -0.69 -11.54 4.49 -53.80 -0.24 -11.78 16 16 C 0.52 8.77 5.77 -10.99 -0.06 8.70 16 17 O -0.53 -10.49 15.12 5.55 0.08 -10.41 16 18 C 0.03 0.45 2.38 -68.75 -0.16 0.28 16 19 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.08 1.07 6.27 37.21 0.23 1.30 16 21 O -0.38 -5.09 10.83 -35.23 -0.38 -5.47 16 22 C 0.06 0.73 7.01 37.21 0.26 0.99 16 23 C 0.00 -0.02 5.31 -3.71 -0.02 -0.04 16 24 N -0.51 -7.47 4.06 -227.72 -0.92 -8.39 16 25 C 0.00 -0.02 5.00 -3.83 -0.02 -0.04 16 26 C 0.27 3.51 5.55 37.15 0.21 3.72 16 27 F -0.19 -2.96 17.16 2.25 0.04 -2.92 16 28 F -0.21 -2.66 14.45 2.25 0.03 -2.63 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.01 0.16 7.13 -51.93 -0.37 -0.21 16 35 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 36 H 0.05 1.23 7.06 -51.93 -0.37 0.86 16 37 H 0.27 7.75 6.78 -40.82 -0.28 7.47 16 38 H 0.40 6.76 6.62 -40.82 -0.27 6.49 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.11 1.31 5.39 -51.93 -0.28 1.03 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 46 H 0.11 1.93 5.91 -51.92 -0.31 1.62 16 47 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -30.27 376.72 -7.02 -37.28 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.31 Total: 7.11 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 0.91 Total: 11.38 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.96 Total: -58.48 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.30 Total: -15.88 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.07 Total: -5.55 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.11 Total: 18.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.27 -7.02 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268737788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.909 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds