Wall clock time and date at job start Tue Mar 31 2020 18:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47691 * 2 1 4 4 C 1.53002 * 109.47420 * 239.99581 * 2 1 3 5 5 N 1.46496 * 109.47576 * 184.99931 * 4 2 1 6 6 C 1.46499 * 120.00265 * 270.00437 * 5 4 2 7 7 C 1.36939 * 119.99890 * 89.99732 * 5 4 2 8 8 H 1.08005 * 119.99989 * 344.63427 * 7 5 4 9 9 C 1.38811 * 119.99954 * 164.62442 * 7 5 4 10 10 N 1.31618 * 119.99993 * 319.42030 * 9 7 5 11 11 Si 1.86800 * 120.00061 * 139.42025 * 9 7 5 12 12 H 1.48497 * 109.47297 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.46975 * 300.00372 * 11 9 7 14 14 H 1.48502 * 109.46815 * 60.00090 * 11 9 7 15 15 N 1.46508 * 109.47242 * 119.99682 * 2 1 3 16 16 C 1.34775 * 119.99877 * 275.00107 * 15 2 1 17 17 O 1.21283 * 120.00099 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99735 * 180.02562 * 16 15 2 19 19 H 1.08997 * 109.51082 * 33.53548 * 18 16 15 20 20 C 1.53108 * 109.50646 * 273.44844 * 18 16 15 21 21 O 1.43011 * 109.25831 * 183.21877 * 20 18 16 22 22 C 1.43009 * 113.74267 * 58.67121 * 21 20 18 23 23 C 1.53095 * 109.25920 * 301.33006 * 22 21 20 24 24 N 1.47009 * 109.50967 * 153.67127 * 18 16 15 25 25 C 1.46906 * 110.99887 * 302.32260 * 24 18 16 26 26 C 1.52991 * 109.47465 * 164.47269 * 25 24 18 27 27 F 1.39908 * 109.47380 * 305.63081 * 26 25 24 28 28 F 1.39897 * 109.47385 * 65.62665 * 26 25 24 29 29 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46932 * 300.00216 * 1 2 3 31 31 H 1.09000 * 109.47102 * 59.99943 * 1 2 3 32 32 H 1.09004 * 109.46873 * 65.00084 * 4 2 1 33 33 H 1.08997 * 109.46840 * 305.00390 * 4 2 1 34 34 H 1.09003 * 109.46984 * 272.05346 * 6 5 4 35 35 H 1.09002 * 109.46920 * 32.05093 * 6 5 4 36 36 H 1.08994 * 109.47116 * 152.05449 * 6 5 4 37 37 H 0.96996 * 120.00220 * 0.05324 * 10 9 7 38 38 H 0.96997 * 119.99373 * 94.99711 * 15 2 1 39 39 H 1.09004 * 109.50525 * 303.15460 * 20 18 16 40 40 H 1.08994 * 109.50209 * 63.27876 * 20 18 16 41 41 H 1.09004 * 109.50717 * 61.26066 * 22 21 20 42 42 H 1.08999 * 109.50942 * 181.39267 * 22 21 20 43 43 H 1.09003 * 109.51318 * 176.78349 * 23 22 21 44 44 H 1.09005 * 109.50553 * 296.86768 * 23 22 21 45 45 H 1.09001 * 109.47011 * 284.47936 * 25 24 18 46 46 H 1.09008 * 109.46888 * 44.46982 * 25 24 18 47 47 H 1.08999 * 109.47543 * 185.63193 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0849 -1.9159 -0.6021 8 1 3.4998 -2.5674 0.0301 9 6 5.4298 -2.1830 -0.8184 10 7 5.9478 -2.0240 -2.0179 11 14 6.5046 -2.7682 0.5929 12 1 7.8908 -2.9806 0.1045 13 1 6.5106 -1.7440 1.6682 14 1 5.9668 -4.0448 1.1282 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8590 1.1587 2.4115 18 6 2.6499 -0.7283 3.5875 19 1 3.3750 -1.4890 3.2979 20 6 1.4749 -1.3914 4.3112 21 8 1.9461 -1.9997 5.5167 22 6 2.5733 -1.0829 6.4173 23 6 3.7594 -0.4167 5.7150 24 7 3.2886 0.2423 4.4881 25 6 4.3883 0.9434 3.8119 26 6 4.7709 2.1875 4.6160 27 9 3.6345 2.9770 4.8225 28 9 5.3000 1.7997 5.8516 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1584 -2.1370 33 1 1.6054 -1.7198 -1.2950 34 1 4.5122 0.0279 -2.8167 35 1 3.8246 1.1920 -1.6589 36 1 5.2869 0.2709 -1.2327 37 1 5.3899 -1.7194 -2.7506 38 1 2.2490 -1.6317 1.1527 39 1 0.7245 -0.6385 4.5526 40 1 1.0338 -2.1524 3.6676 41 1 1.8549 -0.3210 6.7200 42 1 2.9265 -1.6209 7.2970 43 1 4.2056 0.3244 6.3781 44 1 4.5029 -1.1722 5.4608 45 1 5.2501 0.2802 3.7366 46 1 4.0699 1.2403 2.8126 47 1 5.5165 2.7610 4.0653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268737788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:52 Heat of formation + Delta-G solvation = -166.076341 kcal Electronic energy + Delta-G solvation = -32131.284895 eV Core-core repulsion = 27599.233115 eV Total energy + Delta-G solvation = -4532.051780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.93936 -47.91014 -41.58269 -39.86636 -38.21280 -36.89102 -35.86258 -33.50880 -32.63866 -31.53001 -31.14848 -28.27270 -27.36283 -27.13141 -25.95210 -23.70314 -23.45409 -22.63313 -21.44417 -21.10998 -19.43744 -18.84022 -18.44768 -18.04581 -17.81469 -17.35092 -17.19760 -16.69686 -16.40453 -16.09801 -15.83654 -15.76598 -15.48459 -15.44936 -15.07232 -15.03083 -14.85684 -14.55509 -14.26805 -14.02939 -13.86668 -13.70220 -13.38276 -13.29713 -13.04351 -12.85382 -12.81898 -12.66181 -12.57790 -12.52193 -12.32110 -12.17836 -11.99730 -11.90513 -11.70386 -11.53618 -10.95573 -10.57161 -10.25518 -9.92444 -9.63001 -8.96102 -8.37171 -5.17244 1.55075 1.57136 1.59531 1.77456 2.08690 2.44711 2.62522 2.83290 2.89684 3.13978 3.26149 3.47615 3.56456 3.69587 3.74402 3.88100 3.90173 3.99374 4.06046 4.20226 4.21763 4.34055 4.38930 4.45291 4.47525 4.57213 4.61560 4.62574 4.67289 4.79019 4.80799 4.83836 4.87096 5.03701 5.10938 5.13212 5.35810 5.47383 5.65606 5.71018 5.86061 5.98852 6.38378 6.66411 7.02404 7.31683 7.83246 8.25393 8.98558 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.004947 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.137457 B = 5658.628239 C = 6320.128871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.053 0.947 4 C 0.144 3.856 5 N -0.613 5.613 6 C 0.147 3.853 7 C -0.355 4.355 8 H 0.068 0.932 9 C -0.066 4.066 10 N -0.927 5.927 11 Si 1.086 2.914 12 H -0.302 1.302 13 H -0.285 1.285 14 H -0.273 1.273 15 N -0.692 5.692 16 C 0.520 3.480 17 O -0.562 6.562 18 C 0.033 3.967 19 H 0.069 0.931 20 C 0.086 3.914 21 O -0.387 6.387 22 C 0.062 3.938 23 C 0.000 4.000 24 N -0.517 5.517 25 C -0.002 4.002 26 C 0.275 3.725 27 F -0.207 7.207 28 F -0.207 7.207 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.058 0.942 34 H -0.006 1.006 35 H 0.040 0.960 36 H 0.023 0.977 37 H 0.256 0.744 38 H 0.405 0.595 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 3.542 13.605 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.071 0.929 4 C 0.017 3.983 5 N -0.336 5.336 6 C 0.001 3.999 7 C -0.484 4.484 8 H 0.086 0.914 9 C -0.265 4.265 10 N -0.569 5.569 11 Si 0.913 3.087 12 H -0.229 1.229 13 H -0.212 1.212 14 H -0.199 1.199 15 N -0.342 5.342 16 C 0.305 3.695 17 O -0.441 6.441 18 C -0.079 4.079 19 H 0.087 0.913 20 C 0.008 3.992 21 O -0.305 6.305 22 C -0.014 4.014 23 C -0.127 4.127 24 N -0.243 5.243 25 C -0.131 4.131 26 C 0.222 3.778 27 F -0.188 7.188 28 F -0.188 7.188 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.012 0.988 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.241 0.759 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.066 4.042 14.234 15.992 hybrid contribution -0.428 -0.139 -1.184 1.267 sum -6.495 3.903 13.050 15.090 Atomic orbital electron populations 1.22012 0.93711 1.02643 1.02265 1.21614 0.94201 0.96334 0.85630 0.92872 1.21185 0.83221 0.99154 0.94748 1.44115 1.01005 1.19668 1.68829 1.20732 0.94210 0.89885 0.95066 1.19889 0.95517 1.07287 1.25663 0.91435 1.26528 0.98080 1.01138 1.00780 1.70958 1.42115 1.44159 0.99625 0.83213 0.74846 0.76509 0.74161 1.22850 1.21231 1.19865 1.46015 1.65134 1.14449 1.08644 1.20256 0.77780 0.86976 0.84511 1.90671 1.51257 1.16732 1.85416 1.22333 0.99406 0.93911 0.92257 0.91288 1.22508 0.92607 0.97799 0.86240 1.87996 1.77354 1.35691 1.29491 1.22878 0.93193 0.92940 0.92400 1.23371 0.98232 0.99154 0.91972 1.61986 1.28698 1.27910 1.05732 1.23302 0.94819 0.95923 0.99086 1.22092 0.84097 0.90401 0.81253 1.92982 1.54741 1.75589 1.95529 1.92851 1.86574 1.91814 1.47589 0.91343 0.93504 0.90356 0.91763 0.92357 0.98786 0.94175 0.95850 0.93384 0.75864 0.91984 0.86243 0.91976 0.85416 0.86784 0.93532 0.91073 0.89220 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.48 71.98 0.68 -3.04 16 2 C 0.13 4.12 2.88 44.99 0.13 4.25 16 3 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 4 C 0.14 5.00 5.33 86.38 0.46 5.46 16 5 N -0.61 -27.04 2.77 -726.94 -2.01 -29.05 16 6 C 0.15 6.60 9.06 127.77 1.16 7.75 16 7 C -0.35 -17.19 8.48 84.03 0.71 -16.48 16 8 H 0.07 3.13 6.66 -2.91 -0.02 3.11 16 9 C -0.07 -3.47 4.32 84.86 0.37 -3.10 16 10 N -0.93 -53.38 12.82 21.65 0.28 -53.10 16 11 Si 1.09 47.48 30.06 68.60 2.06 49.54 16 12 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 15 N -0.69 -22.21 4.49 -442.53 -1.99 -24.20 16 16 C 0.52 17.24 5.77 87.66 0.51 17.75 16 17 O -0.56 -22.01 15.12 -3.04 -0.05 -22.05 16 18 C 0.03 0.96 2.38 44.18 0.11 1.06 16 19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 20 C 0.09 2.13 6.27 72.02 0.45 2.58 16 21 O -0.39 -9.49 10.83 -148.98 -1.61 -11.10 16 22 C 0.06 1.28 7.01 72.01 0.50 1.79 16 23 C 0.00 0.00 5.31 86.31 0.46 0.45 16 24 N -0.52 -14.73 4.06 -874.37 -3.55 -18.27 16 25 C 0.00 -0.06 5.00 86.30 0.43 0.37 16 26 C 0.28 6.69 5.55 71.98 0.40 7.09 16 27 F -0.21 -6.27 17.16 44.97 0.77 -5.50 16 28 F -0.21 -4.88 14.45 44.97 0.65 -4.23 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 33 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16 34 H -0.01 -0.28 7.13 -2.39 -0.02 -0.30 16 35 H 0.04 1.57 8.09 -2.39 -0.02 1.55 16 36 H 0.02 1.15 7.06 -2.39 -0.02 1.13 16 37 H 0.26 15.04 6.78 -92.71 -0.63 14.42 16 38 H 0.40 12.90 6.62 -92.71 -0.61 12.28 16 39 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.11 2.53 5.39 -2.39 -0.01 2.51 16 44 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 46 H 0.09 3.02 5.91 -2.38 -0.01 3.01 16 47 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -65.18 376.72 1.43 -63.74 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.51 Total: 28.31 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 6.37 Total: 25.92 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -7.27 Total: -124.63 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.66 Total: -33.16 kcal Atomic # 9 Polarization: -11.15 SS G_CDS: 1.42 Total: -9.73 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.06 Total: 49.54 kcal Total: -65.18 1.43 -63.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268737788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.334 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds