Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46873 * 2 1 4 4 C 1.52997 * 109.46576 * 119.99753 * 2 1 3 5 5 N 1.46505 * 109.46743 * 174.99591 * 4 2 1 6 6 C 1.46498 * 120.00203 * 269.99969 * 5 4 2 7 7 C 1.36944 * 119.99477 * 90.00333 * 5 4 2 8 8 H 1.07993 * 120.00077 * 21.41724 * 7 5 4 9 9 C 1.38815 * 119.99701 * 201.41467 * 7 5 4 10 10 N 1.31621 * 120.00109 * 10.40500 * 9 7 5 11 11 Si 1.86794 * 119.99962 * 190.40616 * 9 7 5 12 12 H 1.48495 * 109.47094 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47184 * 120.00016 * 11 9 7 14 14 H 1.48494 * 109.47199 * 239.99846 * 11 9 7 15 15 N 1.46498 * 109.47074 * 239.99833 * 2 1 3 16 16 C 1.34770 * 120.00011 * 84.99919 * 15 2 1 17 17 O 1.21278 * 120.00343 * 0.02562 * 16 15 2 18 18 C 1.50707 * 119.99904 * 179.97438 * 16 15 2 19 19 H 1.08992 * 109.53889 * 33.45294 * 18 16 15 20 20 C 1.53093 * 109.50918 * 273.34089 * 18 16 15 21 21 O 1.43007 * 109.25999 * 183.21687 * 20 18 16 22 22 C 1.43013 * 113.73969 * 58.67008 * 21 20 18 23 23 C 1.53096 * 109.26100 * 301.33020 * 22 21 20 24 24 N 1.47018 * 109.25665 * 56.84709 * 23 22 21 25 25 C 1.46894 * 111.00189 * 177.61086 * 24 23 22 26 26 C 1.52999 * 109.47314 * 73.96686 * 25 24 23 27 27 F 1.39891 * 109.47121 * 65.15922 * 26 25 24 28 28 F 1.39904 * 109.46926 * 305.15799 * 26 25 24 29 29 H 1.08994 * 109.47381 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47355 * 300.00675 * 1 2 3 31 31 H 1.09006 * 109.47079 * 60.00001 * 1 2 3 32 32 H 1.08999 * 109.47572 * 294.99606 * 4 2 1 33 33 H 1.09008 * 109.47128 * 54.99974 * 4 2 1 34 34 H 1.09003 * 109.47158 * 94.85371 * 6 5 4 35 35 H 1.08995 * 109.47129 * 214.84944 * 6 5 4 36 36 H 1.08997 * 109.46958 * 334.85287 * 6 5 4 37 37 H 0.96995 * 120.00177 * 180.02562 * 10 9 7 38 38 H 0.97005 * 119.99741 * 265.00805 * 15 2 1 39 39 H 1.09003 * 109.50703 * 63.27924 * 20 18 16 40 40 H 1.09003 * 109.54446 * 303.17446 * 20 18 16 41 41 H 1.08997 * 109.51245 * 181.39448 * 22 21 20 42 42 H 1.09007 * 109.50545 * 61.26519 * 22 21 20 43 43 H 1.08997 * 109.51033 * 296.91372 * 23 22 21 44 44 H 1.08997 * 109.51080 * 176.77815 * 23 22 21 45 45 H 1.09000 * 109.46961 * 313.96416 * 25 24 23 46 46 H 1.09008 * 109.47108 * 193.96449 * 25 24 23 47 47 H 1.09005 * 109.46998 * 185.16005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5613 7 6 4.2798 0.1648 1.7241 8 1 3.8720 0.8296 2.4711 9 6 5.5945 0.3150 1.3047 10 7 6.0316 -0.3521 0.2577 11 14 6.7434 1.4640 2.2262 12 1 6.0140 2.0902 3.3580 13 1 7.8998 0.6930 2.7493 14 1 7.2299 2.5217 1.3044 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6500 -0.7287 -3.5874 19 1 2.3105 -1.7643 -3.5748 20 6 4.1803 -0.6925 -3.6090 21 8 4.6496 -1.3015 -4.8149 22 6 4.1650 -0.6721 -6.0041 23 6 2.6345 -0.7080 -6.0069 24 7 2.1320 -0.0570 -4.7882 25 6 0.6636 -0.0196 -4.7785 26 6 0.1197 -1.4189 -4.4834 27 9 0.4858 -1.7977 -3.1874 28 9 0.6514 -2.3294 -5.4030 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 1.6052 -1.7198 1.2952 34 1 4.3583 -1.7625 -0.4785 35 1 5.0441 -2.2423 1.0923 36 1 3.4403 -2.8386 0.6020 37 1 6.9504 -0.2475 -0.0352 38 1 2.2489 -1.6319 -1.1525 39 1 4.5695 -1.2390 -2.7499 40 1 4.5212 0.3419 -3.5672 41 1 4.5431 -1.2037 -6.8773 42 1 4.5048 0.3633 -6.0323 43 1 2.2947 -1.7433 -6.0329 44 1 2.2595 -0.1791 -6.8830 45 1 0.3021 0.3129 -5.7516 46 1 0.3228 0.6725 -4.0084 47 1 -0.9671 -1.4113 -4.5664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268737789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = -128.540814 kcal Electronic energy + Delta-G solvation = -32900.177592 eV Core-core repulsion = 28369.753475 eV Total energy + Delta-G solvation = -4530.424117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.37989 -47.24770 -40.11525 -38.41390 -36.41292 -35.59693 -33.93645 -31.87961 -30.89165 -30.46973 -29.70087 -26.21664 -26.15541 -25.59436 -24.60047 -22.75096 -22.06823 -21.04428 -19.99813 -19.68972 -17.99762 -17.65048 -17.20586 -16.77614 -16.35788 -16.29750 -15.77391 -15.50013 -14.87468 -14.77718 -14.48850 -14.25432 -13.89378 -13.82321 -13.69981 -13.55875 -13.31241 -13.23128 -12.87311 -12.67216 -12.43246 -12.25753 -12.07462 -11.92459 -11.79133 -11.48648 -11.39607 -11.14273 -10.93575 -10.82133 -10.75078 -10.55189 -10.49102 -10.15917 -9.92096 -9.82556 -9.71965 -9.07013 -8.56892 -8.31304 -8.25064 -6.74504 -5.70040 -3.14288 3.13148 3.36755 3.40872 3.48404 3.49794 3.61859 3.82168 4.06501 4.14695 4.32498 4.52320 4.53894 4.91864 5.03722 5.07104 5.23319 5.28924 5.35671 5.37724 5.43618 5.52014 5.59473 5.64959 5.71485 5.83576 5.88404 5.99282 6.02134 6.12756 6.24387 6.28582 6.48265 6.55175 6.66787 6.68728 6.78473 6.91004 7.24008 7.26276 7.38009 7.69576 7.83769 8.19332 8.40862 8.88229 9.26154 9.88205 10.35600 11.35248 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.004728 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.426570 B = 5920.820198 C = 7064.983405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.119 3.881 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.004 3.996 10 N -0.906 5.906 11 Si 0.903 3.097 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.690 5.690 16 C 0.534 3.466 17 O -0.540 6.540 18 C 0.019 3.981 19 H 0.084 0.916 20 C 0.079 3.921 21 O -0.378 6.378 22 C 0.061 3.939 23 C -0.004 4.004 24 N -0.505 5.505 25 C 0.005 3.995 26 C 0.219 3.781 27 F -0.193 7.193 28 F -0.202 7.202 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.029 0.971 35 H 0.046 0.954 36 H -0.007 1.007 37 H 0.251 0.749 38 H 0.395 0.605 39 H 0.118 0.882 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 -4.183 -12.202 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.551 5.551 11 Si 0.734 3.266 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.339 5.339 16 C 0.318 3.682 17 O -0.417 6.417 18 C -0.093 4.093 19 H 0.101 0.899 20 C 0.001 3.999 21 O -0.296 6.296 22 C -0.016 4.016 23 C -0.131 4.131 24 N -0.229 5.229 25 C -0.125 4.125 26 C 0.163 3.837 27 F -0.175 7.175 28 F -0.183 7.183 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.011 0.989 37 H 0.061 0.939 38 H 0.229 0.771 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.123 0.877 46 H 0.138 0.862 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.158 -3.051 -12.259 17.533 hybrid contribution 0.355 -0.427 0.346 0.654 sum -11.804 -3.478 -11.913 17.127 Atomic orbital electron populations 1.22123 0.97013 1.01000 1.01370 1.21845 0.91582 0.99066 0.86407 0.89727 1.21184 0.85811 0.97220 0.94326 1.43903 0.99017 1.20973 1.68111 1.20860 0.94604 0.84948 0.97702 1.19218 0.93463 1.09607 1.15924 0.91402 1.24960 0.98549 0.99081 0.96789 1.70031 1.15915 1.44551 1.24590 0.86204 0.80987 0.80360 0.79084 1.20474 1.21767 1.21816 1.45727 1.65561 1.13589 1.09023 1.19696 0.77658 0.86902 0.83957 1.90628 1.50741 1.15430 1.84920 1.22736 0.98580 0.98047 0.89910 0.89875 1.22632 0.89278 1.00206 0.87752 1.88025 1.71096 1.56703 1.13787 1.22653 0.91947 0.98568 0.88471 1.23298 0.97259 1.00106 0.92461 1.62008 1.06209 1.53145 1.01500 1.23562 0.89304 0.93380 1.06228 1.23020 0.99180 0.89153 0.72308 1.92977 1.93025 1.92549 1.38925 1.92873 1.88324 1.70466 1.66680 0.93225 0.92254 0.93239 0.92378 0.94076 0.95271 0.93481 0.98895 0.93899 0.77137 0.86413 0.91580 0.88518 0.92370 0.91025 0.89556 0.87675 0.86156 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.19 2.88 -67.93 -0.20 2.00 16 3 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 4 C 0.14 2.75 5.33 -4.04 -0.02 2.72 16 5 N -0.60 -14.16 2.78 -181.12 -0.50 -14.66 16 6 C 0.16 3.76 7.59 59.85 0.45 4.22 16 7 C -0.25 -6.76 9.69 -15.05 -0.15 -6.91 16 8 H 0.07 1.81 7.84 -52.49 -0.41 1.39 16 9 C 0.00 0.12 5.16 -17.43 -0.09 0.03 16 10 N -0.91 -25.47 10.48 55.49 0.58 -24.89 16 11 Si 0.90 22.04 29.57 -169.99 -5.03 17.02 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 N -0.69 -12.51 3.86 -53.81 -0.21 -12.72 16 16 C 0.53 10.01 4.76 -10.98 -0.05 9.95 16 17 O -0.54 -11.70 14.91 5.56 0.08 -11.61 16 18 C 0.02 0.31 1.75 -68.75 -0.12 0.19 16 19 H 0.08 1.33 5.49 -51.93 -0.28 1.05 16 20 C 0.08 1.42 6.27 37.21 0.23 1.65 16 21 O -0.38 -6.26 10.83 -35.23 -0.38 -6.64 16 22 C 0.06 0.78 7.01 37.21 0.26 1.04 16 23 C 0.00 -0.04 5.25 -3.71 -0.02 -0.06 16 24 N -0.50 -7.21 4.48 -227.73 -1.02 -8.23 16 25 C 0.00 0.05 5.46 -3.83 -0.02 0.03 16 26 C 0.22 2.29 5.15 37.16 0.19 2.48 16 27 F -0.19 -2.56 12.25 2.25 0.03 -2.53 16 28 F -0.20 -2.31 13.93 2.25 0.03 -2.28 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.04 0.71 7.86 -51.92 -0.41 0.30 16 34 H 0.03 0.71 6.74 -51.93 -0.35 0.36 16 35 H 0.05 1.20 7.14 -51.93 -0.37 0.83 16 36 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 37 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.39 6.91 7.18 -40.82 -0.29 6.62 16 39 H 0.12 2.31 7.92 -51.93 -0.41 1.90 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.88 5.29 -51.93 -0.27 0.60 16 44 H 0.09 0.82 8.05 -51.93 -0.42 0.41 16 45 H 0.10 0.89 7.96 -51.93 -0.41 0.48 16 46 H 0.12 1.60 6.50 -51.92 -0.34 1.26 16 47 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -31.64 366.89 -7.35 -38.98 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.29 Total: 6.66 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 0.83 Total: 15.39 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -1.15 Total: -60.50 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.30 Total: -18.26 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.06 Total: -4.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -7.35 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268737789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.559 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds