Wall clock time and date at job start Tue Mar 31 2020 18:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46873 * 2 1 4 4 C 1.52997 * 109.46576 * 119.99753 * 2 1 3 5 5 N 1.46505 * 109.46743 * 174.99591 * 4 2 1 6 6 C 1.46498 * 120.00203 * 269.99969 * 5 4 2 7 7 C 1.36944 * 119.99477 * 90.00333 * 5 4 2 8 8 H 1.07993 * 120.00077 * 21.41724 * 7 5 4 9 9 C 1.38815 * 119.99701 * 201.41467 * 7 5 4 10 10 N 1.31621 * 120.00109 * 10.40500 * 9 7 5 11 11 Si 1.86794 * 119.99962 * 190.40616 * 9 7 5 12 12 H 1.48495 * 109.47094 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47184 * 120.00016 * 11 9 7 14 14 H 1.48494 * 109.47199 * 239.99846 * 11 9 7 15 15 N 1.46498 * 109.47074 * 239.99833 * 2 1 3 16 16 C 1.34770 * 120.00011 * 84.99919 * 15 2 1 17 17 O 1.21278 * 120.00343 * 0.02562 * 16 15 2 18 18 C 1.50707 * 119.99904 * 179.97438 * 16 15 2 19 19 H 1.08992 * 109.53889 * 33.45294 * 18 16 15 20 20 C 1.53093 * 109.50918 * 273.34089 * 18 16 15 21 21 O 1.43007 * 109.25999 * 183.21687 * 20 18 16 22 22 C 1.43013 * 113.73969 * 58.67008 * 21 20 18 23 23 C 1.53096 * 109.26100 * 301.33020 * 22 21 20 24 24 N 1.47018 * 109.25665 * 56.84709 * 23 22 21 25 25 C 1.46894 * 111.00189 * 177.61086 * 24 23 22 26 26 C 1.52999 * 109.47314 * 73.96686 * 25 24 23 27 27 F 1.39891 * 109.47121 * 65.15922 * 26 25 24 28 28 F 1.39904 * 109.46926 * 305.15799 * 26 25 24 29 29 H 1.08994 * 109.47381 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47355 * 300.00675 * 1 2 3 31 31 H 1.09006 * 109.47079 * 60.00001 * 1 2 3 32 32 H 1.08999 * 109.47572 * 294.99606 * 4 2 1 33 33 H 1.09008 * 109.47128 * 54.99974 * 4 2 1 34 34 H 1.09003 * 109.47158 * 94.85371 * 6 5 4 35 35 H 1.08995 * 109.47129 * 214.84944 * 6 5 4 36 36 H 1.08997 * 109.46958 * 334.85287 * 6 5 4 37 37 H 0.96995 * 120.00177 * 180.02562 * 10 9 7 38 38 H 0.97005 * 119.99741 * 265.00805 * 15 2 1 39 39 H 1.09003 * 109.50703 * 63.27924 * 20 18 16 40 40 H 1.09003 * 109.54446 * 303.17446 * 20 18 16 41 41 H 1.08997 * 109.51245 * 181.39448 * 22 21 20 42 42 H 1.09007 * 109.50545 * 61.26519 * 22 21 20 43 43 H 1.08997 * 109.51033 * 296.91372 * 23 22 21 44 44 H 1.08997 * 109.51080 * 176.77815 * 23 22 21 45 45 H 1.09000 * 109.46961 * 313.96416 * 25 24 23 46 46 H 1.09008 * 109.47108 * 193.96449 * 25 24 23 47 47 H 1.09005 * 109.46998 * 185.16005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5613 7 6 4.2798 0.1648 1.7241 8 1 3.8720 0.8296 2.4711 9 6 5.5945 0.3150 1.3047 10 7 6.0316 -0.3521 0.2577 11 14 6.7434 1.4640 2.2262 12 1 6.0140 2.0902 3.3580 13 1 7.8998 0.6930 2.7493 14 1 7.2299 2.5217 1.3044 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6500 -0.7287 -3.5874 19 1 2.3105 -1.7643 -3.5748 20 6 4.1803 -0.6925 -3.6090 21 8 4.6496 -1.3015 -4.8149 22 6 4.1650 -0.6721 -6.0041 23 6 2.6345 -0.7080 -6.0069 24 7 2.1320 -0.0570 -4.7882 25 6 0.6636 -0.0196 -4.7785 26 6 0.1197 -1.4189 -4.4834 27 9 0.4858 -1.7977 -3.1874 28 9 0.6514 -2.3294 -5.4030 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 1.6052 -1.7198 1.2952 34 1 4.3583 -1.7625 -0.4785 35 1 5.0441 -2.2423 1.0923 36 1 3.4403 -2.8386 0.6020 37 1 6.9504 -0.2475 -0.0352 38 1 2.2489 -1.6319 -1.1525 39 1 4.5695 -1.2390 -2.7499 40 1 4.5212 0.3419 -3.5672 41 1 4.5431 -1.2037 -6.8773 42 1 4.5048 0.3633 -6.0323 43 1 2.2947 -1.7433 -6.0329 44 1 2.2595 -0.1791 -6.8830 45 1 0.3021 0.3129 -5.7516 46 1 0.3228 0.6725 -4.0084 47 1 -0.9671 -1.4113 -4.5664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268737789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:56 Heat of formation + Delta-G solvation = -151.836085 kcal Electronic energy + Delta-G solvation = -32901.187751 eV Core-core repulsion = 28369.753475 eV Total energy + Delta-G solvation = -4531.434276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.23836 -48.11777 -41.43951 -39.79453 -38.02960 -36.83614 -35.66214 -33.37449 -32.61512 -31.54920 -31.02327 -27.96797 -27.37895 -27.25756 -25.91497 -23.80207 -23.50826 -22.54290 -21.45521 -21.07676 -18.91622 -18.76826 -18.53488 -18.43890 -17.58096 -17.47393 -17.06484 -16.83681 -16.58971 -16.05692 -15.84651 -15.57101 -15.31160 -15.12946 -15.07030 -14.81835 -14.76632 -14.46795 -14.28636 -13.90217 -13.72004 -13.47486 -13.28851 -13.17381 -13.05150 -12.84819 -12.76673 -12.65784 -12.55816 -12.50434 -12.26267 -12.17263 -11.99634 -11.79447 -11.72486 -11.66096 -11.01561 -10.62665 -10.50670 -9.84441 -9.31835 -8.70637 -7.78198 -5.22554 1.43789 1.46476 1.54542 1.68962 2.14759 2.52085 2.54875 2.81570 2.99445 3.27127 3.35971 3.48530 3.70935 3.71779 3.76695 3.85660 3.90955 4.02031 4.16967 4.25908 4.34434 4.44177 4.45439 4.57163 4.57479 4.64350 4.68988 4.79789 4.82786 4.86654 4.93292 4.95005 5.03397 5.21390 5.40849 5.42516 5.57747 5.67724 5.77080 5.81213 5.83987 6.02047 6.36921 6.72073 7.21357 7.40810 7.93125 8.33633 9.23954 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.004728 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.426570 B = 5920.820198 C = 7064.983405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.124 3.876 3 H 0.038 0.962 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.177 3.823 7 C -0.255 4.255 8 H 0.067 0.933 9 C -0.049 4.049 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.291 1.291 14 H -0.302 1.302 15 N -0.686 5.686 16 C 0.532 3.468 17 O -0.574 6.574 18 C 0.035 3.965 19 H 0.090 0.910 20 C 0.089 3.911 21 O -0.391 6.391 22 C 0.050 3.950 23 C 0.001 3.999 24 N -0.526 5.526 25 C 0.004 3.996 26 C 0.216 3.784 27 F -0.212 7.212 28 F -0.206 7.206 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.030 0.970 37 H 0.243 0.757 38 H 0.399 0.601 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.130 0.870 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.140 0.860 46 H 0.099 0.901 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -5.034 -13.103 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.057 0.943 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.032 3.968 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.244 4.244 10 N -0.574 5.574 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.218 1.218 14 H -0.230 1.230 15 N -0.335 5.335 16 C 0.318 3.682 17 O -0.454 6.454 18 C -0.077 4.077 19 H 0.108 0.892 20 C 0.011 3.989 21 O -0.310 6.310 22 C -0.026 4.026 23 C -0.126 4.126 24 N -0.250 5.250 25 C -0.125 4.125 26 C 0.161 3.839 27 F -0.193 7.193 28 F -0.188 7.188 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.147 0.853 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.158 0.842 46 H 0.118 0.882 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.501 -3.922 -13.148 19.963 hybrid contribution 1.027 -0.148 0.587 1.193 sum -13.473 -4.069 -12.560 18.864 Atomic orbital electron populations 1.21974 0.93567 1.02585 1.01884 1.21660 0.94129 0.96325 0.86183 0.94321 1.21364 0.83247 0.99131 0.94743 1.44080 1.00834 1.20492 1.67943 1.20625 0.94200 0.85963 0.96025 1.19479 0.93909 1.09654 1.15527 0.91515 1.25603 1.00049 1.00910 0.97863 1.70187 1.15500 1.45912 1.25759 0.85350 0.79354 0.78518 0.78101 1.19315 1.21817 1.22951 1.45736 1.65227 1.13678 1.08875 1.20087 0.76913 0.86522 0.84682 1.90603 1.52319 1.16911 1.85551 1.22466 0.96930 0.98178 0.90093 0.89244 1.22272 0.90748 0.97832 0.88071 1.87998 1.71695 1.56969 1.14295 1.23003 0.93177 0.98603 0.87800 1.23367 0.96200 1.00581 0.92410 1.61960 1.08351 1.53515 1.01210 1.23620 0.87413 0.93954 1.07501 1.23315 1.01369 0.88035 0.71200 1.92931 1.93337 1.92646 1.40410 1.92860 1.88659 1.70525 1.66731 0.90988 0.90602 0.93893 0.91746 0.90975 0.97038 0.96714 0.95178 0.94777 0.76665 0.88936 0.94671 0.85274 0.93008 0.90782 0.86381 0.84196 0.88247 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.48 71.98 0.68 -3.21 16 2 C 0.12 4.55 2.88 44.99 0.13 4.68 16 3 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 4 C 0.14 5.25 5.33 86.38 0.46 5.71 16 5 N -0.61 -28.91 2.78 -726.93 -2.02 -30.93 16 6 C 0.18 8.18 7.59 127.77 0.97 9.15 16 7 C -0.26 -13.81 9.69 84.03 0.81 -12.99 16 8 H 0.07 3.56 7.84 -2.91 -0.02 3.54 16 9 C -0.05 -2.74 5.16 84.86 0.44 -2.30 16 10 N -0.93 -54.02 10.48 21.65 0.23 -53.79 16 11 Si 0.96 46.30 29.57 68.60 2.03 48.33 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 15 N -0.69 -24.92 3.86 -442.54 -1.71 -26.62 16 16 C 0.53 20.34 4.76 87.66 0.42 20.76 16 17 O -0.57 -25.60 14.91 -3.02 -0.05 -25.64 16 18 C 0.04 1.16 1.75 44.18 0.08 1.24 16 19 H 0.09 2.83 5.49 -2.39 -0.01 2.82 16 20 C 0.09 3.36 6.27 72.01 0.45 3.81 16 21 O -0.39 -13.11 10.83 -148.98 -1.61 -14.72 16 22 C 0.05 1.24 7.01 72.01 0.50 1.74 16 23 C 0.00 0.02 5.25 86.31 0.45 0.48 16 24 N -0.53 -14.46 4.48 -874.39 -3.92 -18.38 16 25 C 0.00 0.08 5.46 86.30 0.47 0.55 16 26 C 0.22 3.89 5.15 71.98 0.37 4.26 16 27 F -0.21 -5.20 12.25 44.97 0.55 -4.64 16 28 F -0.21 -4.10 13.93 44.97 0.63 -3.47 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.06 2.31 8.03 -2.39 -0.02 2.29 16 33 H 0.07 2.25 7.86 -2.38 -0.02 2.23 16 34 H 0.01 0.57 6.74 -2.39 -0.02 0.55 16 35 H 0.01 0.74 7.14 -2.39 -0.02 0.73 16 36 H 0.03 1.14 7.84 -2.39 -0.02 1.13 16 37 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.40 13.79 7.18 -92.70 -0.67 13.13 16 39 H 0.09 3.90 7.92 -2.39 -0.02 3.88 16 40 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.07 1.61 5.29 -2.39 -0.01 1.60 16 44 H 0.12 1.82 8.05 -2.39 -0.02 1.80 16 45 H 0.14 1.86 7.96 -2.39 -0.02 1.84 16 46 H 0.10 2.54 6.50 -2.38 -0.02 2.53 16 47 H 0.15 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -71.59 366.89 0.69 -70.91 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.32 Total: 25.11 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 6.24 Total: 33.86 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -7.42 Total: -129.72 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.66 Total: -40.37 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 1.18 Total: -8.12 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.59 0.69 -70.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268737789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.928 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds