Wall clock time and date at job start Tue Mar 31 2020 18:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47135 * 2 1 4 4 N 1.28438 * 125.18834 * 85.68795 * 3 2 1 5 5 C 1.30867 * 110.92864 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.85796 * 0.02562 * 5 4 3 7 7 C 1.36594 * 125.18983 * 266.00365 * 3 2 1 8 8 C 1.47161 * 126.88606 * 0.02562 * 7 3 2 9 9 O 1.21622 * 120.00083 * 5.57213 * 8 7 3 10 10 N 1.34780 * 120.00109 * 185.56570 * 8 7 3 11 11 C 1.46497 * 119.99990 * 185.04433 * 10 8 7 12 12 C 1.50711 * 109.47082 * 180.02562 * 11 10 8 13 13 C 1.30998 * 119.99922 * 127.19521 * 12 11 10 14 14 C 1.50703 * 119.99968 * 7.60941 * 13 12 11 15 15 N 1.46896 * 109.47041 * 127.05734 * 14 13 12 16 16 C 1.46901 * 110.99918 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47242 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99966 * 359.97438 * 17 16 15 19 19 N 1.34781 * 120.00248 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99996 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00080 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99506 * 179.97438 * 20 19 17 23 23 N 1.31401 * 120.00417 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99649 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47106 * 89.99938 * 24 22 20 26 26 H 1.48494 * 109.47169 * 210.00213 * 24 22 20 27 27 H 1.48501 * 109.46770 * 329.99962 * 24 22 20 28 28 H 1.08992 * 109.47266 * 300.00053 * 1 2 3 29 29 H 1.09005 * 109.47116 * 60.00486 * 1 2 3 30 30 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47382 * 239.99891 * 2 1 3 32 32 H 1.08997 * 109.47193 * 119.99841 * 2 1 3 33 33 H 1.07991 * 126.07054 * 179.97438 * 5 4 3 34 34 H 1.08003 * 127.32237 * 180.02562 * 6 5 4 35 35 H 0.96999 * 119.99758 * 5.05447 * 10 8 7 36 36 H 1.08996 * 109.47529 * 300.00233 * 11 10 8 37 37 H 1.08996 * 109.47376 * 60.00701 * 11 10 8 38 38 H 1.07998 * 119.99930 * 307.19851 * 12 11 10 39 39 H 1.08000 * 119.99973 * 187.60393 * 13 12 11 40 40 H 1.09002 * 109.47309 * 247.05760 * 14 13 12 41 41 H 1.09004 * 109.47292 * 7.05750 * 14 13 12 42 42 H 1.00899 * 111.00403 * 56.04821 * 15 14 13 43 43 H 1.08999 * 109.47364 * 300.00017 * 16 15 14 44 44 H 1.09005 * 109.47232 * 60.00191 * 16 15 14 45 45 H 0.97000 * 119.99776 * 0.02562 * 19 17 16 46 46 H 0.97001 * 120.00215 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1906 2.1054 1.0467 5 6 2.6368 3.2929 0.7253 6 6 2.7646 3.3407 -0.6647 7 6 2.3541 2.0975 -1.1136 8 6 2.2946 1.6381 -2.5104 9 8 1.8199 0.5496 -2.7729 10 7 2.7661 2.4238 -3.4989 11 6 2.6073 2.0165 -4.8971 12 6 3.2163 3.0610 -5.7968 13 6 4.0973 2.7130 -6.7017 14 6 4.3756 1.2547 -6.9607 15 7 4.2304 0.9759 -8.3957 16 6 4.4955 -0.4394 -8.6864 17 6 4.3379 -0.6867 -10.1646 18 8 4.0341 0.2262 -10.9033 19 7 4.5335 -1.9224 -10.6659 20 6 4.3896 -2.1475 -12.0106 21 1 4.1200 -1.3345 -12.6683 22 6 4.5918 -3.4214 -12.5273 23 7 4.9204 -4.4105 -11.7271 24 14 4.3965 -3.7279 -14.3596 25 1 5.6999 -3.5155 -15.0387 26 1 3.9441 -5.1245 -14.5824 27 1 3.3902 -2.7871 -14.9143 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8647 4.0940 1.4127 34 1 3.1072 4.1723 -1.2626 35 1 3.2106 3.2588 -3.2844 36 1 3.1095 1.0624 -5.0569 37 1 1.5470 1.9120 -5.1270 38 1 2.9263 4.0964 -5.6955 39 1 4.6241 3.4712 -7.2621 40 1 5.3916 1.0171 -6.6454 41 1 3.6686 0.6444 -6.3987 42 1 4.8295 1.5755 -8.9430 43 1 5.5124 -0.6884 -8.3832 44 1 3.7896 -1.0618 -8.1363 45 1 4.7754 -2.6527 -10.0750 46 1 5.0620 -5.2997 -12.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273974295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:55 Heat of formation + Delta-G solvation = 31.883292 kcal Electronic energy + Delta-G solvation = -27016.548495 eV Core-core repulsion = 22943.770075 eV Total energy + Delta-G solvation = -4072.778420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.92087 -39.77924 -38.35636 -37.08722 -35.38791 -34.71241 -33.90952 -33.02171 -31.29376 -31.16092 -30.15255 -28.06372 -26.38811 -24.81251 -24.40105 -23.19111 -23.16812 -21.71094 -20.46640 -19.54738 -19.04117 -18.08311 -17.76986 -16.79516 -16.66928 -16.16864 -15.89440 -15.76029 -15.34622 -15.07182 -14.81433 -14.59639 -14.48159 -14.26138 -14.16817 -13.72627 -13.64451 -13.36559 -13.02563 -12.95513 -12.79235 -12.51543 -12.43563 -11.87485 -11.68712 -11.55589 -11.49678 -11.20034 -11.04191 -10.90218 -10.49564 -10.39173 -10.21871 -9.75742 -9.58243 -9.51006 -9.45676 -9.20563 -8.47168 -8.06389 -7.96020 -6.41573 -3.82494 0.86973 1.67911 2.07247 2.23051 2.83024 2.96480 3.18043 3.26755 3.32910 3.90579 4.11202 4.12931 4.19103 4.40490 4.52825 4.57771 4.62195 4.75084 4.78812 4.88218 5.07509 5.13146 5.14931 5.22526 5.25020 5.29624 5.29931 5.43083 5.49074 5.56457 5.66202 5.69180 5.79180 5.94635 5.97153 6.08331 6.25077 6.31042 6.34064 6.52990 7.01448 7.15091 7.55346 7.61199 7.64318 7.75371 8.06242 8.61181 9.17827 9.54199 10.05518 10.76135 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.001622 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.744785 B =17254.546221 C =18316.753110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.252 5.252 4 N -0.277 5.277 5 C -0.005 4.005 6 C -0.191 4.191 7 C -0.037 4.037 8 C 0.589 3.411 9 O -0.535 6.535 10 N -0.709 5.709 11 C 0.142 3.858 12 C -0.186 4.186 13 C -0.107 4.107 14 C 0.068 3.932 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.186 0.814 34 H 0.160 0.840 35 H 0.404 0.596 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.038 0.962 41 H 0.086 0.914 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 14.012 26.067 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.040 5.040 4 N -0.110 5.110 5 C -0.180 4.180 6 C -0.220 4.220 7 C -0.166 4.166 8 C 0.374 3.626 9 O -0.412 6.412 10 N -0.360 5.360 11 C 0.020 3.980 12 C -0.205 4.205 13 C -0.126 4.126 14 C -0.060 4.060 15 N -0.295 5.295 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.203 0.797 34 H 0.178 0.822 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.335 12.702 26.244 29.477 hybrid contribution 1.494 0.303 -0.989 1.817 sum -2.841 13.005 25.255 28.549 Atomic orbital electron populations 1.22074 0.93255 1.03714 1.03058 1.22252 0.96445 0.76319 1.05964 1.45911 1.43956 1.12373 1.01795 1.73220 1.18650 1.05187 1.13925 1.23582 1.04171 0.95233 0.95030 1.22259 1.07155 0.96828 0.95754 1.21417 1.11000 0.94352 0.89858 1.16915 0.78327 0.84303 0.83078 1.90818 1.45915 1.20624 1.83877 1.45657 1.59581 1.24840 1.05934 1.20574 1.01886 0.97589 0.77917 1.22633 0.99007 0.99472 0.99398 1.22870 0.95689 0.97245 0.96793 1.21301 1.00100 0.93837 0.90806 1.60108 1.60902 1.04639 1.03867 1.21699 0.99870 0.90078 0.96650 1.19783 0.84709 0.84076 0.88826 1.90523 1.52732 1.43382 1.60124 1.41863 1.60818 1.08272 1.09034 1.19710 1.44248 0.95588 0.83403 0.87894 1.25267 0.97185 0.95131 1.00373 1.69608 1.47564 1.01440 1.35666 0.85848 0.78693 0.77561 0.82131 1.20433 1.20917 1.19391 0.91859 0.91575 0.89910 0.86355 0.88403 0.79656 0.82201 0.76103 0.89569 0.90298 0.86242 0.86414 0.94400 0.89645 0.83082 0.93783 0.89480 0.77436 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.11 0.89 6.57 -4.04 -0.03 0.86 16 3 N -0.25 -2.46 3.35 -57.14 -0.19 -2.65 16 4 N -0.28 -2.72 11.90 30.59 0.36 -2.36 16 5 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 6 C -0.19 -1.34 10.50 -38.98 -0.41 -1.75 16 7 C -0.04 -0.35 6.96 -82.06 -0.57 -0.92 16 8 C 0.59 6.00 7.78 -12.64 -0.10 5.90 16 9 O -0.54 -6.99 14.69 5.26 0.08 -6.91 16 10 N -0.71 -5.53 5.53 -62.65 -0.35 -5.87 16 11 C 0.14 1.29 5.76 -5.19 -0.03 1.26 16 12 C -0.19 -1.50 9.63 -36.02 -0.35 -1.85 16 13 C -0.11 -1.02 9.77 -36.02 -0.35 -1.37 16 14 C 0.07 0.80 5.77 -4.98 -0.03 0.77 16 15 N -0.66 -10.51 6.12 -116.33 -0.71 -11.22 16 16 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 17 C 0.44 10.45 7.82 -10.98 -0.09 10.37 16 18 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 1.06 6.21 -51.93 -0.32 0.74 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.16 0.60 7.62 -52.48 -0.40 0.20 16 35 H 0.40 2.05 7.54 -40.82 -0.31 1.74 16 36 H 0.09 0.89 5.30 -51.93 -0.28 0.61 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 1.00 5.30 -51.93 -0.28 0.73 16 42 H 0.35 5.62 8.42 -39.29 -0.33 5.29 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -34.76 393.82 -7.59 -42.35 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -6.40 Total: 13.79 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.05 Total: 5.00 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.22 Total: -60.43 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.16 Total: -22.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.76 -7.59 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273974295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.232 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds