Wall clock time and date at job start Tue Mar 31 2020 18:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.50697 * 109.47159 * 180.02562 * 11 10 8 13 13 C 1.31001 * 120.00461 * 125.00197 * 12 11 10 14 14 C 1.50698 * 120.00158 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47000 * 124.99305 * 14 13 12 16 16 C 1.46897 * 110.99958 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47056 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00419 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99956 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00229 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00033 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46941 * 90.00130 * 24 22 20 26 26 H 1.48496 * 109.47057 * 210.00228 * 24 22 20 27 27 H 1.48503 * 109.47201 * 330.00250 * 24 22 20 28 28 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 29 29 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 31 31 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 32 32 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 33 33 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 34 34 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 35 35 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 36 36 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 37 37 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 38 38 H 1.07999 * 119.99916 * 304.99146 * 12 11 10 39 39 H 1.07999 * 119.99623 * 359.97438 * 13 12 11 40 40 H 1.08995 * 109.47416 * 244.99003 * 14 13 12 41 41 H 1.08998 * 109.47240 * 5.00083 * 14 13 12 42 42 H 1.00906 * 111.00209 * 56.04774 * 15 14 13 43 43 H 1.09003 * 109.47538 * 299.99817 * 16 15 14 44 44 H 1.08998 * 109.47414 * 60.00446 * 16 15 14 45 45 H 0.97000 * 120.00497 * 359.97438 * 19 17 16 46 46 H 0.97002 * 119.99904 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.3981 2.9794 5.7761 13 6 2.7257 3.3709 6.8300 14 6 3.2938 4.4343 7.7341 15 7 2.3258 5.5311 7.8684 16 6 2.8465 6.5883 8.7453 17 6 1.8282 7.6934 8.8592 18 8 0.7728 7.6088 8.2677 19 7 2.0908 8.7761 9.6176 20 6 1.1646 9.7817 9.7208 21 1 0.2248 9.7065 9.1941 22 6 1.4351 10.8978 10.5031 23 7 2.5788 10.9897 11.1437 24 14 0.1734 12.2682 10.6432 25 1 -0.7313 11.9930 11.7881 26 1 0.8695 13.5615 10.8620 27 1 -0.6211 12.3395 9.3906 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8658 4.0937 -1.4127 34 1 3.1046 4.1733 1.2628 35 1 3.0901 3.3159 3.2976 36 1 1.8236 1.6588 5.2019 37 1 3.4630 1.0288 4.9122 38 1 4.3596 3.4189 5.5551 39 1 1.7642 2.9315 7.0509 40 1 3.4963 4.0063 8.7159 41 1 4.2202 4.8177 7.3066 42 1 1.4368 5.1901 8.2023 43 1 3.0457 6.1750 9.7341 44 1 3.7701 6.9868 8.3253 45 1 2.9350 8.8440 10.0904 46 1 2.7677 11.7690 11.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273974296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:59 Heat of formation + Delta-G solvation = 23.339644 kcal Electronic energy + Delta-G solvation = -26690.712599 eV Core-core repulsion = 22617.563699 eV Total energy + Delta-G solvation = -4073.148900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.86864 -39.73287 -38.35804 -36.82782 -35.50949 -34.74906 -33.93292 -33.02350 -31.31449 -31.16100 -30.12114 -28.51211 -26.26813 -24.65475 -24.21265 -23.26180 -22.53114 -21.54827 -20.66694 -19.86985 -19.17392 -18.35481 -17.89656 -16.64307 -16.42059 -16.36931 -15.90887 -15.58591 -15.25349 -15.10277 -14.81009 -14.56699 -14.45011 -14.15376 -13.98919 -13.90540 -13.64247 -13.32218 -13.28995 -12.93302 -12.55788 -12.45906 -12.36222 -11.81965 -11.70148 -11.60591 -11.52935 -11.25331 -11.15115 -11.05749 -10.49431 -10.40629 -10.23736 -9.76150 -9.56652 -9.52748 -9.40000 -9.25904 -8.49907 -8.09414 -7.98103 -6.43622 -3.84515 0.90447 1.69483 2.10729 2.28853 2.85281 2.99845 3.16671 3.25569 3.31644 3.88383 4.09361 4.14587 4.22395 4.31105 4.57783 4.61207 4.66070 4.78331 4.81956 4.87038 5.08681 5.15894 5.20725 5.22202 5.23677 5.30402 5.35435 5.37612 5.43942 5.47463 5.62963 5.68629 5.76017 5.92946 5.93396 6.14439 6.22749 6.36417 6.38479 6.52043 7.03358 7.13042 7.53529 7.58140 7.66926 7.77543 8.04262 8.59065 9.15962 9.52028 10.03361 10.74035 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.001553 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.159054 B =18028.353955 C =18904.680888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.254 5.254 4 N -0.277 5.277 5 C -0.003 4.003 6 C -0.186 4.186 7 C -0.041 4.041 8 C 0.592 3.408 9 O -0.542 6.542 10 N -0.708 5.708 11 C 0.156 3.844 12 C -0.187 4.187 13 C -0.106 4.106 14 C 0.081 3.919 15 N -0.665 5.665 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -20.817 -17.258 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.042 5.042 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.215 4.215 7 C -0.169 4.169 8 C 0.377 3.623 9 O -0.420 6.420 10 N -0.360 5.360 11 C 0.034 3.966 12 C -0.206 4.206 13 C -0.125 4.125 14 C -0.048 4.048 15 N -0.298 5.298 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.204 0.796 34 H 0.180 0.820 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.200 -22.008 -18.806 29.252 hybrid contribution 0.337 1.435 1.898 2.403 sum 4.537 -20.573 -16.908 27.013 Atomic orbital electron populations 1.22078 0.93315 1.03560 1.03206 1.22211 0.96409 0.76467 1.05747 1.45875 1.44158 1.12342 1.01864 1.73213 1.18627 1.05261 1.13886 1.23607 1.03974 0.95216 0.95091 1.22324 1.06709 0.96702 0.95811 1.21383 1.11294 0.94435 0.89798 1.16905 0.77926 0.84326 0.83119 1.90784 1.45587 1.21670 1.83953 1.45677 1.64532 1.18293 1.07460 1.20359 1.01498 0.95724 0.79069 1.22702 1.01061 1.00125 0.96725 1.22903 0.98834 0.95149 0.95655 1.21097 0.96145 0.90206 0.97329 1.60134 1.05606 1.10160 1.53853 1.21691 0.98534 0.92990 0.95036 1.19790 0.88882 0.84556 0.84239 1.90526 1.26831 1.80113 1.49255 1.41863 1.18778 1.16852 1.42491 1.19712 0.99374 0.96479 1.27401 0.87902 1.25265 0.97335 0.98906 0.96411 1.69611 1.22782 1.30770 1.31123 0.85852 0.79905 0.79633 0.78868 1.20424 1.20907 1.19389 0.91782 0.90048 0.91549 0.88518 0.86510 0.79556 0.82001 0.75664 0.90666 0.90562 0.86374 0.86876 0.94232 0.90418 0.83025 0.93778 0.89521 0.77450 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.11 0.88 6.58 -4.04 -0.03 0.86 16 3 N -0.25 -2.57 3.35 -57.14 -0.19 -2.76 16 4 N -0.28 -2.90 11.90 30.59 0.36 -2.54 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.55 10.50 -38.98 -0.41 -1.96 16 7 C -0.04 -0.41 6.96 -82.05 -0.57 -0.98 16 8 C 0.59 6.16 7.78 -12.64 -0.10 6.07 16 9 O -0.54 -6.82 14.68 5.25 0.08 -6.75 16 10 N -0.71 -5.93 5.54 -62.65 -0.35 -6.27 16 11 C 0.16 1.28 6.12 -5.20 -0.03 1.25 16 12 C -0.19 -1.50 9.24 -36.03 -0.33 -1.83 16 13 C -0.11 -1.00 9.38 -36.03 -0.34 -1.34 16 14 C 0.08 0.89 6.12 -4.98 -0.03 0.86 16 15 N -0.67 -10.20 6.12 -116.34 -0.71 -10.91 16 16 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 17 C 0.44 10.23 7.82 -10.98 -0.09 10.15 16 18 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 19 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.12 0.98 6.20 -51.93 -0.32 0.66 16 33 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.16 0.91 7.59 -52.49 -0.40 0.51 16 35 H 0.41 2.71 7.50 -40.82 -0.31 2.40 16 36 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.12 0.83 7.84 -52.49 -0.41 0.42 16 39 H 0.11 1.04 7.84 -52.49 -0.41 0.63 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 42 H 0.35 5.57 8.42 -39.29 -0.33 5.24 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -34.26 398.22 -7.73 -41.99 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.63 Total: 13.83 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.02 Total: 4.88 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.22 Total: -60.20 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.16 Total: -22.38 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.26 -7.73 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273974296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.327 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds