Wall clock time and date at job start Tue Mar 31 2020 18:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.50697 * 109.47159 * 180.02562 * 11 10 8 13 13 C 1.31001 * 120.00461 * 125.00197 * 12 11 10 14 14 C 1.50698 * 120.00158 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47000 * 124.99305 * 14 13 12 16 16 C 1.46897 * 110.99958 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47056 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00419 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99956 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00229 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00033 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46941 * 90.00130 * 24 22 20 26 26 H 1.48496 * 109.47057 * 210.00228 * 24 22 20 27 27 H 1.48503 * 109.47201 * 330.00250 * 24 22 20 28 28 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 29 29 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 31 31 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 32 32 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 33 33 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 34 34 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 35 35 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 36 36 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 37 37 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 38 38 H 1.07999 * 119.99916 * 304.99146 * 12 11 10 39 39 H 1.07999 * 119.99623 * 359.97438 * 13 12 11 40 40 H 1.08995 * 109.47416 * 244.99003 * 14 13 12 41 41 H 1.08998 * 109.47240 * 5.00083 * 14 13 12 42 42 H 1.00906 * 111.00209 * 56.04774 * 15 14 13 43 43 H 1.09003 * 109.47538 * 299.99817 * 16 15 14 44 44 H 1.08998 * 109.47414 * 60.00446 * 16 15 14 45 45 H 0.97000 * 120.00497 * 359.97438 * 19 17 16 46 46 H 0.97002 * 119.99904 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.3981 2.9794 5.7761 13 6 2.7257 3.3709 6.8300 14 6 3.2938 4.4343 7.7341 15 7 2.3258 5.5311 7.8684 16 6 2.8465 6.5883 8.7453 17 6 1.8282 7.6934 8.8592 18 8 0.7728 7.6088 8.2677 19 7 2.0908 8.7761 9.6176 20 6 1.1646 9.7817 9.7208 21 1 0.2248 9.7065 9.1941 22 6 1.4351 10.8978 10.5031 23 7 2.5788 10.9897 11.1437 24 14 0.1734 12.2682 10.6432 25 1 -0.7313 11.9930 11.7881 26 1 0.8695 13.5615 10.8620 27 1 -0.6211 12.3395 9.3906 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8658 4.0937 -1.4127 34 1 3.1046 4.1733 1.2628 35 1 3.0901 3.3159 3.2976 36 1 1.8236 1.6588 5.2019 37 1 3.4630 1.0288 4.9122 38 1 4.3596 3.4189 5.5551 39 1 1.7642 2.9315 7.0509 40 1 3.4963 4.0063 8.7159 41 1 4.2202 4.8177 7.3066 42 1 1.4368 5.1901 8.2023 43 1 3.0457 6.1750 9.7341 44 1 3.7701 6.9868 8.3253 45 1 2.9350 8.8440 10.0904 46 1 2.7677 11.7690 11.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273974296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:58 Heat of formation + Delta-G solvation = -2.999283 kcal Electronic energy + Delta-G solvation = -26691.854741 eV Core-core repulsion = 22617.563699 eV Total energy + Delta-G solvation = -4074.291042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.54610 -40.51582 -40.14376 -37.77564 -36.47918 -35.87207 -35.40150 -33.96095 -33.23563 -31.97856 -30.75551 -29.59302 -27.61160 -26.00792 -25.05630 -24.16920 -23.38192 -22.23980 -21.46667 -21.08888 -20.41866 -19.86370 -19.03786 -17.88743 -17.37584 -17.14494 -16.96943 -16.70914 -16.42919 -16.07894 -15.95062 -15.73853 -15.47988 -15.30218 -15.09787 -14.85932 -14.76551 -14.42654 -14.09568 -13.94396 -13.53800 -13.52030 -13.23984 -13.05885 -13.03738 -12.89122 -12.69798 -12.41134 -12.32727 -12.11982 -12.01699 -11.85200 -11.50159 -11.29235 -10.52540 -10.34646 -10.29712 -10.06773 -10.00745 -9.96570 -9.25419 -8.46063 -5.94713 0.18300 0.98452 1.38718 1.42822 1.46233 1.55440 1.62735 2.06393 2.10886 2.29612 2.31270 3.02891 3.21414 3.53788 3.55444 3.60148 3.77709 3.98264 4.06587 4.11547 4.17997 4.28063 4.32107 4.44265 4.49307 4.53694 4.57630 4.60145 4.66290 4.67985 4.70435 4.81306 4.86010 4.89385 5.07241 5.23161 5.41766 5.54126 5.68269 5.73182 5.77998 5.91052 6.11279 6.34581 6.39168 6.61074 6.96530 7.07353 7.13546 7.57343 8.12799 8.71172 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.001553 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.159054 B =18028.353955 C =18904.680888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.107 3.893 3 N -0.264 5.264 4 N -0.300 5.300 5 C -0.009 4.009 6 C -0.180 4.180 7 C -0.062 4.062 8 C 0.589 3.411 9 O -0.570 6.570 10 N -0.698 5.698 11 C 0.157 3.843 12 C -0.164 4.164 13 C -0.123 4.123 14 C 0.085 3.915 15 N -0.682 5.682 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.215 0.785 34 H 0.189 0.811 35 H 0.417 0.583 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.344 0.656 43 H 0.068 0.932 44 H 0.107 0.893 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -20.584 -17.495 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.053 5.053 4 N -0.133 5.133 5 C -0.184 4.184 6 C -0.208 4.208 7 C -0.190 4.190 8 C 0.376 3.624 9 O -0.451 6.451 10 N -0.350 5.350 11 C 0.034 3.966 12 C -0.183 4.183 13 C -0.143 4.143 14 C -0.043 4.043 15 N -0.314 5.314 16 C -0.067 4.067 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.231 0.769 34 H 0.206 0.794 35 H 0.255 0.745 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.162 0.838 43 H 0.086 0.914 44 H 0.125 0.875 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.510 -21.775 -19.029 29.438 hybrid contribution -0.025 1.310 1.918 2.323 sum 5.484 -20.465 -17.111 27.234 Atomic orbital electron populations 1.22021 0.92985 1.04540 1.01833 1.22319 0.96669 0.76067 1.06150 1.46077 1.44484 1.12879 1.01857 1.73190 1.19479 1.06195 1.14411 1.24174 1.03077 0.95269 0.95852 1.22708 1.05488 0.96643 0.96006 1.21549 1.12437 0.95379 0.89661 1.17043 0.77663 0.84100 0.83633 1.90765 1.46994 1.22915 1.84386 1.45605 1.63729 1.18502 1.07130 1.20350 1.01139 0.96143 0.78973 1.22743 1.01186 0.98948 0.95462 1.22820 0.99322 0.95715 0.96420 1.21144 0.95437 0.89219 0.98463 1.60144 1.06378 1.11460 1.53409 1.21551 0.96738 0.91409 0.97043 1.20938 0.89395 0.85046 0.82245 1.90493 1.29086 1.81062 1.50504 1.41932 1.18617 1.17185 1.43283 1.19667 0.99580 0.98399 1.28830 0.90394 1.26019 0.99165 1.00471 0.95520 1.69666 1.23737 1.31517 1.31079 0.84940 0.77709 0.77148 0.78614 1.19667 1.19513 1.19870 0.92104 0.87947 0.93725 0.86877 0.87258 0.76868 0.79411 0.74522 0.91732 0.89935 0.84688 0.87143 0.92978 0.89195 0.83797 0.91393 0.87463 0.76899 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 10.24 71.98 0.74 -1.56 16 2 C 0.11 1.71 6.58 86.38 0.57 2.28 16 3 N -0.26 -5.30 3.35 -334.68 -1.12 -6.42 16 4 N -0.30 -6.08 11.90 -57.14 -0.68 -6.76 16 5 C -0.01 -0.14 12.03 85.18 1.02 0.89 16 6 C -0.18 -2.69 10.50 22.66 0.24 -2.46 16 7 C -0.06 -1.21 6.96 40.79 0.28 -0.92 16 8 C 0.59 12.08 7.78 86.59 0.67 12.75 16 9 O -0.57 -14.57 14.68 -4.13 -0.06 -14.63 16 10 N -0.70 -10.79 5.54 -470.37 -2.60 -13.40 16 11 C 0.16 2.36 6.12 85.63 0.52 2.89 16 12 C -0.16 -2.25 9.24 25.64 0.24 -2.01 16 13 C -0.12 -2.11 9.38 25.64 0.24 -1.87 16 14 C 0.09 1.66 6.12 85.56 0.52 2.19 16 15 N -0.68 -19.90 6.12 -522.00 -3.19 -23.09 16 16 C 0.06 2.09 6.17 85.56 0.53 2.61 16 17 C 0.44 20.32 7.82 87.66 0.69 21.00 16 18 O -0.62 -34.33 15.78 -3.05 -0.05 -34.38 16 19 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 20 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 24 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.90 6.20 -2.39 -0.01 1.89 16 33 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.19 1.61 7.59 -2.91 -0.02 1.59 16 35 H 0.42 4.70 7.50 -92.70 -0.70 4.01 16 36 H 0.06 1.14 7.79 -2.38 -0.02 1.13 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.14 1.44 7.84 -2.91 -0.02 1.42 16 39 H 0.11 1.94 7.84 -2.91 -0.02 1.91 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.54 7.79 -2.39 -0.02 1.52 16 42 H 0.34 10.74 8.42 -89.69 -0.76 9.98 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 46 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -74.89 398.22 -0.63 -75.52 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -1.15 Total: 40.22 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 7.54 Total: 17.54 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -8.94 Total: -128.86 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.11 Total: -49.01 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -74.89 -0.63 -75.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273974296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.519 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds