Wall clock time and date at job start Tue Mar 31 2020 20:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47191 * 2 1 4 4 C 1.36932 * 120.00070 * 264.96500 * 3 2 1 5 5 H 1.08004 * 120.00290 * 186.68053 * 4 3 2 6 6 C 1.38813 * 119.99895 * 6.68422 * 4 3 2 7 7 N 1.31616 * 119.99973 * 32.35343 * 6 4 3 8 8 Si 1.86796 * 119.99985 * 212.34915 * 6 4 3 9 9 H 1.48501 * 109.46906 * 95.00050 * 8 6 4 10 10 H 1.48497 * 109.47379 * 214.99771 * 8 6 4 11 11 H 1.48504 * 109.47594 * 335.00140 * 8 6 4 12 12 C 1.46509 * 120.00013 * 84.95856 * 3 2 1 13 13 C 1.52995 * 109.47318 * 270.00367 * 12 3 2 14 14 C 1.53043 * 109.46003 * 174.99941 * 13 12 3 15 15 C 1.53191 * 109.31099 * 181.37152 * 14 13 12 16 16 N 1.46916 * 108.77718 * 305.36461 * 15 14 13 17 17 C 1.34781 * 120.63170 * 233.58716 * 16 15 14 18 18 O 1.21531 * 119.99815 * 10.89972 * 17 16 15 19 19 C 1.48054 * 120.00022 * 190.90001 * 17 16 15 20 20 C 1.39378 * 119.68935 * 187.70298 * 19 17 16 21 21 C 1.38468 * 119.09290 * 179.72399 * 20 19 17 22 22 C 1.38901 * 118.46670 * 0.27783 * 21 20 19 23 23 F 1.35105 * 120.35256 * 179.97438 * 22 21 20 24 24 C 1.38879 * 119.29839 * 359.97438 * 22 21 20 25 25 N 1.31459 * 120.85770 * 359.97438 * 24 22 21 26 26 C 1.46922 * 118.74078 * 53.86400 * 16 15 14 27 27 C 1.53042 * 109.45112 * 295.06213 * 13 12 3 28 28 H 1.09005 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47499 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47145 * 60.00463 * 1 2 3 31 31 H 1.08999 * 109.47499 * 240.00031 * 2 1 3 32 32 H 1.09000 * 109.47145 * 119.99537 * 2 1 3 33 33 H 0.97007 * 120.00042 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46632 * 150.00220 * 12 3 2 35 35 H 1.09004 * 109.46767 * 30.00476 * 12 3 2 36 36 H 1.09005 * 109.45942 * 55.02556 * 13 12 3 37 37 H 1.09001 * 109.49677 * 61.42167 * 14 13 12 38 38 H 1.08999 * 109.49499 * 301.32478 * 14 13 12 39 39 H 1.09005 * 109.58308 * 185.57484 * 15 14 13 40 40 H 1.08998 * 109.70372 * 65.22992 * 15 14 13 41 41 H 1.07994 * 120.45888 * 359.97438 * 20 19 17 42 42 H 1.07990 * 120.76964 * 180.29920 * 21 20 19 43 43 H 1.08000 * 119.56822 * 179.97438 * 24 22 21 44 44 H 1.09000 * 109.58857 * 65.92068 * 26 16 15 45 45 H 1.08997 * 109.59100 * 186.35304 * 26 16 15 46 46 H 1.08998 * 109.49743 * 298.57536 * 27 13 12 47 47 H 1.08998 * 109.49452 * 58.66606 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3446 1.9921 -1.1813 5 1 2.8053 2.9689 -1.1749 6 6 2.0834 1.3558 -2.3870 7 7 1.0385 0.5635 -2.5001 8 14 3.2147 1.6240 -3.8490 9 1 4.2239 0.5359 -3.9001 10 1 2.4159 1.6174 -5.1008 11 1 3.9037 2.9320 -3.7084 12 6 2.1574 2.1090 1.2639 13 6 0.8511 2.8413 1.5772 14 6 0.9530 3.4986 2.9555 15 6 -0.3687 4.2018 3.2803 16 7 -0.6894 5.1329 2.1900 17 6 -0.9473 6.4303 2.4484 18 8 -0.7251 6.8857 3.5531 19 6 -1.5013 7.3007 1.3866 20 6 -1.6150 8.6722 1.6076 21 6 -2.1294 9.4755 0.6039 22 6 -2.5193 8.8779 -0.5879 23 9 -3.0267 9.6255 -1.5924 24 6 -2.3820 7.5039 -0.7360 25 7 -1.8891 6.7670 0.2347 26 6 -0.7298 4.6215 0.8133 27 6 0.6013 3.9148 0.5154 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8556 0.1191 -3.3428 34 1 2.9682 2.8326 1.1791 35 1 2.3807 1.4052 2.0657 36 1 0.0259 2.1291 1.5746 37 1 1.7622 4.2289 2.9513 38 1 1.1541 2.7363 3.7081 39 1 -0.2687 4.7540 4.2149 40 1 -1.1643 3.4629 3.3759 41 1 -1.3023 9.1030 2.5472 42 1 -2.2250 10.5419 0.7442 43 1 -2.6842 7.0347 -1.6606 44 1 -1.5530 3.9146 0.7100 45 1 -0.8682 5.4506 0.1194 46 1 1.4138 4.6411 0.5342 47 1 0.5522 3.4486 -0.4687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274945166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:28 Heat of formation + Delta-G solvation = 0.893914 kcal Electronic energy + Delta-G solvation = -29782.185819 eV Core-core repulsion = 25688.143638 eV Total energy + Delta-G solvation = -4094.042182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.39018 -41.01951 -39.27371 -37.63503 -35.80744 -33.49294 -32.66340 -31.62837 -30.83255 -30.41100 -29.17177 -26.82545 -24.95989 -24.30631 -23.71109 -22.76786 -22.17254 -20.78136 -19.99404 -19.25106 -18.02222 -17.89306 -17.18106 -16.56748 -16.25784 -15.97872 -15.29151 -15.13277 -14.92894 -14.39009 -14.18392 -14.06222 -13.84019 -13.76787 -13.56796 -13.33777 -13.19188 -13.07822 -12.62378 -12.42322 -12.10527 -11.79663 -11.54287 -11.31741 -10.99749 -10.86429 -10.76995 -10.61828 -10.41403 -10.39908 -10.24298 -10.17413 -10.06269 -9.66437 -9.51793 -9.38401 -9.17966 -9.02132 -8.41286 -8.24738 -6.87562 -5.79134 -2.98994 0.16630 0.66047 2.48168 2.96802 3.41480 3.45650 3.50930 3.52364 3.55532 3.86502 4.27842 4.34651 4.43898 4.54734 4.85449 5.18150 5.24732 5.28725 5.33168 5.37917 5.42651 5.46979 5.61461 5.65165 5.76594 5.92827 5.97138 6.07696 6.20967 6.24821 6.33036 6.46000 6.57945 6.60644 6.64776 6.73415 6.83197 6.89632 6.99369 7.15714 7.21718 7.24079 7.27699 7.54297 7.66810 7.77990 8.10882 8.12929 8.36068 9.26392 9.92184 10.38507 11.26105 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.003588 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.646266 B = 7802.701008 C = 9501.466741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.169 3.831 3 N -0.596 5.596 4 C -0.247 4.247 5 H 0.073 0.927 6 C 0.004 3.996 7 N -0.885 5.885 8 Si 0.878 3.122 9 H -0.291 1.291 10 H -0.296 1.296 11 H -0.282 1.282 12 C 0.158 3.842 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.582 5.582 17 C 0.568 3.432 18 O -0.545 6.545 19 C 0.073 3.927 20 C -0.084 4.084 21 C -0.116 4.116 22 C 0.068 3.932 23 F -0.125 7.125 24 C 0.072 3.928 25 N -0.414 5.414 26 C 0.080 3.920 27 C -0.121 4.121 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.003 0.997 33 H 0.251 0.749 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.178 0.822 44 H 0.064 0.936 45 H 0.132 0.868 46 H 0.047 0.953 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 13.349 7.373 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 N -0.317 5.317 4 C -0.375 4.375 5 H 0.091 0.909 6 C -0.194 4.194 7 N -0.529 5.529 8 Si 0.708 3.292 9 H -0.219 1.219 10 H -0.223 1.223 11 H -0.207 1.207 12 C 0.030 3.970 13 C -0.133 4.133 14 C -0.167 4.167 15 C -0.010 4.010 16 N -0.312 5.312 17 C 0.354 3.646 18 O -0.423 6.423 19 C -0.065 4.065 20 C -0.105 4.105 21 C -0.142 4.142 22 C 0.046 3.954 23 F -0.104 7.104 24 C -0.088 4.088 25 N -0.125 5.125 26 C -0.042 4.042 27 C -0.159 4.159 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.195 0.805 44 H 0.082 0.918 45 H 0.148 0.852 46 H 0.066 0.934 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.422 12.582 7.694 16.510 hybrid contribution 0.248 1.050 -1.040 1.499 sum -7.173 13.632 6.653 16.780 Atomic orbital electron populations 1.22433 0.99280 0.98099 1.01535 1.20655 0.92541 0.84723 0.97711 1.44246 1.75910 1.10068 1.01475 1.19158 1.32575 1.02358 0.83429 0.90906 1.24586 0.97531 1.00503 0.96822 1.70208 1.23280 1.34586 1.24874 0.86622 0.82016 0.77709 0.82870 1.21858 1.22274 1.20737 1.20798 0.93992 0.93879 0.88301 1.21999 1.01831 0.97255 0.92225 1.21968 0.96354 0.99468 0.98885 1.21685 0.97520 0.91784 0.90045 1.48075 1.65796 1.07463 1.09855 1.17746 0.78530 0.81967 0.86333 1.90757 1.54137 1.73938 1.23510 1.21388 0.99672 0.92643 0.92758 1.22020 0.95644 0.92632 1.00160 1.21682 0.98651 1.02058 0.91808 1.19081 0.98868 0.90912 0.86523 1.91556 1.84243 1.76088 1.58494 1.23241 0.96979 0.88868 0.99739 1.67960 1.07523 1.37125 0.99910 1.23062 0.98627 1.01243 0.81246 1.22047 0.94844 0.96890 1.02095 0.96535 0.96568 0.88692 0.90643 0.97840 0.93898 0.93987 0.94622 0.91148 0.92046 0.91339 0.89656 0.91524 0.82409 0.82775 0.80518 0.91787 0.85189 0.93396 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.61 37.15 0.36 -3.04 16 2 C 0.17 3.90 5.65 -4.04 -0.02 3.88 16 3 N -0.60 -13.78 2.41 -173.23 -0.42 -14.20 16 4 C -0.25 -6.25 7.55 -15.06 -0.11 -6.36 16 5 H 0.07 1.86 7.99 -52.48 -0.42 1.44 16 6 C 0.00 0.09 4.70 -17.43 -0.08 0.01 16 7 N -0.88 -23.64 8.94 55.49 0.50 -23.14 16 8 Si 0.88 20.89 29.66 -169.99 -5.04 15.85 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.16 3.06 5.21 -4.04 -0.02 3.04 16 13 C -0.11 -1.92 2.29 -90.58 -0.21 -2.13 16 14 C -0.13 -1.84 5.36 -26.61 -0.14 -1.99 16 15 C 0.11 1.56 6.44 -3.72 -0.02 1.54 16 16 N -0.58 -8.71 2.97 -173.55 -0.51 -9.22 16 17 C 0.57 8.53 7.63 -12.23 -0.09 8.44 16 18 O -0.55 -9.13 15.80 5.34 0.08 -9.05 16 19 C 0.07 0.93 6.57 -83.02 -0.55 0.38 16 20 C -0.08 -0.84 9.63 -39.07 -0.38 -1.21 16 21 C -0.12 -0.94 10.15 -39.25 -0.40 -1.34 16 22 C 0.07 0.62 7.36 -39.10 -0.29 0.33 16 23 F -0.13 -1.16 17.28 2.25 0.04 -1.12 16 24 C 0.07 0.72 11.17 -17.47 -0.20 0.52 16 25 N -0.41 -5.09 6.17 -9.74 -0.06 -5.15 16 26 C 0.08 1.23 5.84 -3.49 -0.02 1.21 16 27 C -0.12 -2.14 4.97 -26.38 -0.13 -2.27 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.32 5.95 -51.93 -0.31 0.01 16 30 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 31 H 0.08 1.95 6.05 -51.93 -0.31 1.64 16 32 H 0.00 0.07 7.96 -51.93 -0.41 -0.34 16 33 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.04 0.82 8.03 -51.93 -0.42 0.41 16 35 H 0.04 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.07 1.31 5.81 -51.93 -0.30 1.01 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.19 7.02 -51.93 -0.36 0.82 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.16 1.41 7.66 -52.49 -0.40 1.01 16 42 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.13 1.95 4.18 -77.81 -0.33 1.63 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.11 2.29 6.26 -51.93 -0.32 1.97 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -28.28 368.97 -9.00 -37.28 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.84 Total: 2.17 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.30 Total: 1.02 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.50 Total: -51.71 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.28 -9.00 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274945166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds