Wall clock time and date at job start Tue Mar 31 2020 20:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47191 * 2 1 4 4 C 1.36932 * 120.00070 * 264.96500 * 3 2 1 5 5 H 1.08004 * 120.00290 * 186.68053 * 4 3 2 6 6 C 1.38813 * 119.99895 * 6.68422 * 4 3 2 7 7 N 1.31616 * 119.99973 * 32.35343 * 6 4 3 8 8 Si 1.86796 * 119.99985 * 212.34915 * 6 4 3 9 9 H 1.48501 * 109.46906 * 95.00050 * 8 6 4 10 10 H 1.48497 * 109.47379 * 214.99771 * 8 6 4 11 11 H 1.48504 * 109.47594 * 335.00140 * 8 6 4 12 12 C 1.46509 * 120.00013 * 84.95856 * 3 2 1 13 13 C 1.52995 * 109.47318 * 270.00367 * 12 3 2 14 14 C 1.53043 * 109.46003 * 174.99941 * 13 12 3 15 15 C 1.53191 * 109.31099 * 181.37152 * 14 13 12 16 16 N 1.46916 * 108.77718 * 305.36461 * 15 14 13 17 17 C 1.34781 * 120.63170 * 233.58716 * 16 15 14 18 18 O 1.21531 * 119.99815 * 10.89972 * 17 16 15 19 19 C 1.48054 * 120.00022 * 190.90001 * 17 16 15 20 20 C 1.39378 * 119.68935 * 187.70298 * 19 17 16 21 21 C 1.38468 * 119.09290 * 179.72399 * 20 19 17 22 22 C 1.38901 * 118.46670 * 0.27783 * 21 20 19 23 23 F 1.35105 * 120.35256 * 179.97438 * 22 21 20 24 24 C 1.38879 * 119.29839 * 359.97438 * 22 21 20 25 25 N 1.31459 * 120.85770 * 359.97438 * 24 22 21 26 26 C 1.46922 * 118.74078 * 53.86400 * 16 15 14 27 27 C 1.53042 * 109.45112 * 295.06213 * 13 12 3 28 28 H 1.09005 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47499 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47145 * 60.00463 * 1 2 3 31 31 H 1.08999 * 109.47499 * 240.00031 * 2 1 3 32 32 H 1.09000 * 109.47145 * 119.99537 * 2 1 3 33 33 H 0.97007 * 120.00042 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46632 * 150.00220 * 12 3 2 35 35 H 1.09004 * 109.46767 * 30.00476 * 12 3 2 36 36 H 1.09005 * 109.45942 * 55.02556 * 13 12 3 37 37 H 1.09001 * 109.49677 * 61.42167 * 14 13 12 38 38 H 1.08999 * 109.49499 * 301.32478 * 14 13 12 39 39 H 1.09005 * 109.58308 * 185.57484 * 15 14 13 40 40 H 1.08998 * 109.70372 * 65.22992 * 15 14 13 41 41 H 1.07994 * 120.45888 * 359.97438 * 20 19 17 42 42 H 1.07990 * 120.76964 * 180.29920 * 21 20 19 43 43 H 1.08000 * 119.56822 * 179.97438 * 24 22 21 44 44 H 1.09000 * 109.58857 * 65.92068 * 26 16 15 45 45 H 1.08997 * 109.59100 * 186.35304 * 26 16 15 46 46 H 1.08998 * 109.49743 * 298.57536 * 27 13 12 47 47 H 1.08998 * 109.49452 * 58.66606 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3446 1.9921 -1.1813 5 1 2.8053 2.9689 -1.1749 6 6 2.0834 1.3558 -2.3870 7 7 1.0385 0.5635 -2.5001 8 14 3.2147 1.6240 -3.8490 9 1 4.2239 0.5359 -3.9001 10 1 2.4159 1.6174 -5.1008 11 1 3.9037 2.9320 -3.7084 12 6 2.1574 2.1090 1.2639 13 6 0.8511 2.8413 1.5772 14 6 0.9530 3.4986 2.9555 15 6 -0.3687 4.2018 3.2803 16 7 -0.6894 5.1329 2.1900 17 6 -0.9473 6.4303 2.4484 18 8 -0.7251 6.8857 3.5531 19 6 -1.5013 7.3007 1.3866 20 6 -1.6150 8.6722 1.6076 21 6 -2.1294 9.4755 0.6039 22 6 -2.5193 8.8779 -0.5879 23 9 -3.0267 9.6255 -1.5924 24 6 -2.3820 7.5039 -0.7360 25 7 -1.8891 6.7670 0.2347 26 6 -0.7298 4.6215 0.8133 27 6 0.6013 3.9148 0.5154 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8556 0.1191 -3.3428 34 1 2.9682 2.8326 1.1791 35 1 2.3807 1.4052 2.0657 36 1 0.0259 2.1291 1.5746 37 1 1.7622 4.2289 2.9513 38 1 1.1541 2.7363 3.7081 39 1 -0.2687 4.7540 4.2149 40 1 -1.1643 3.4629 3.3759 41 1 -1.3023 9.1030 2.5472 42 1 -2.2250 10.5419 0.7442 43 1 -2.6842 7.0347 -1.6606 44 1 -1.5530 3.9146 0.7100 45 1 -0.8682 5.4506 0.1194 46 1 1.4138 4.6411 0.5342 47 1 0.5522 3.4486 -0.4687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274945166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:27 Heat of formation + Delta-G solvation = -12.645138 kcal Electronic energy + Delta-G solvation = -29782.772917 eV Core-core repulsion = 25688.143638 eV Total energy + Delta-G solvation = -4094.629279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.12672 -41.98561 -40.33705 -39.02442 -37.40582 -34.73494 -33.69906 -32.87144 -32.39660 -31.55636 -30.91089 -28.32456 -26.21104 -25.25255 -25.08121 -23.98875 -23.62802 -22.23734 -21.50225 -20.50551 -18.88074 -18.77903 -18.49197 -18.08809 -17.11264 -17.00570 -16.83027 -16.37360 -16.00883 -15.78382 -15.38939 -15.31369 -15.04985 -14.99067 -14.75614 -14.63856 -14.41308 -14.27286 -13.88517 -13.74005 -13.59674 -13.42930 -13.10995 -12.85909 -12.69044 -12.60391 -12.36599 -12.10973 -11.94720 -11.81900 -11.69987 -11.44900 -11.31435 -11.22061 -11.10981 -10.88481 -10.26054 -10.20185 -10.06369 -9.60666 -8.75729 -7.77266 -4.96528 -0.67333 -0.06770 1.48096 1.48984 1.55511 1.59451 1.89562 2.55122 2.60754 2.76303 2.98417 3.31074 3.46143 3.62513 3.71292 3.72157 3.95510 4.05738 4.10240 4.20038 4.30214 4.47414 4.58585 4.63580 4.64151 4.70306 4.73289 4.76940 4.89279 4.92095 5.00018 5.09461 5.13981 5.15858 5.20679 5.24530 5.29736 5.36721 5.43564 5.57640 5.66673 5.74510 5.79691 5.86084 6.24127 6.28228 6.41694 6.45270 6.97929 7.30015 8.03441 8.44866 9.26230 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.003588 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.646266 B = 7802.701008 C = 9501.466741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 N -0.607 5.607 4 C -0.240 4.240 5 H 0.067 0.933 6 C -0.039 4.039 7 N -0.903 5.903 8 Si 0.927 3.073 9 H -0.298 1.298 10 H -0.302 1.302 11 H -0.278 1.278 12 C 0.155 3.845 13 C -0.101 4.101 14 C -0.117 4.117 15 C 0.111 3.889 16 N -0.586 5.586 17 C 0.566 3.434 18 O -0.567 6.567 19 C 0.047 3.953 20 C -0.079 4.079 21 C -0.100 4.100 22 C 0.074 3.926 23 F -0.123 7.123 24 C 0.067 3.933 25 N -0.437 5.437 26 C 0.092 3.908 27 C -0.111 4.111 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.024 0.976 33 H 0.244 0.756 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.168 0.832 42 H 0.190 0.810 43 H 0.194 0.806 44 H 0.058 0.942 45 H 0.139 0.861 46 H 0.039 0.961 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.025 14.951 8.421 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 N -0.328 5.328 4 C -0.369 4.369 5 H 0.085 0.915 6 C -0.235 4.235 7 N -0.550 5.550 8 Si 0.758 3.242 9 H -0.226 1.226 10 H -0.229 1.229 11 H -0.203 1.203 12 C 0.029 3.971 13 C -0.122 4.122 14 C -0.155 4.155 15 C -0.011 4.011 16 N -0.317 5.317 17 C 0.353 3.647 18 O -0.447 6.447 19 C -0.089 4.089 20 C -0.100 4.100 21 C -0.126 4.126 22 C 0.052 3.948 23 F -0.101 7.101 24 C -0.093 4.093 25 N -0.148 5.148 26 C -0.030 4.030 27 C -0.149 4.149 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.186 0.814 42 H 0.207 0.793 43 H 0.211 0.789 44 H 0.076 0.924 45 H 0.155 0.845 46 H 0.057 0.943 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.853 14.197 8.764 18.440 hybrid contribution 0.365 0.633 -1.357 1.541 sum -7.488 14.830 7.408 18.190 Atomic orbital electron populations 1.22202 0.98495 0.98506 1.00595 1.20568 0.93123 0.84665 0.97101 1.44390 1.76008 1.10375 1.02076 1.19244 1.31388 1.01927 0.84380 0.91538 1.25041 0.98504 1.01407 0.98539 1.70331 1.24121 1.35768 1.24762 0.85837 0.80362 0.77309 0.80690 1.22575 1.22946 1.20330 1.20943 0.94892 0.94087 0.87165 1.21789 0.99955 0.96708 0.93768 1.21859 0.96564 0.99723 0.97394 1.21744 0.97504 0.91889 0.89946 1.48111 1.66048 1.07885 1.09607 1.18101 0.77935 0.81948 0.86681 1.90730 1.55155 1.74264 1.24518 1.21206 1.01567 0.93421 0.92729 1.22145 0.95201 0.91608 1.01014 1.21999 0.96647 1.03498 0.90459 1.19108 0.98254 0.90605 0.86814 1.91570 1.84131 1.75926 1.58508 1.23503 0.96611 0.89528 0.99683 1.67737 1.08581 1.38142 1.00364 1.22884 0.96794 1.01204 0.82075 1.21845 0.95955 0.96777 1.00334 0.95408 0.95147 0.91824 0.93741 0.95794 0.94635 0.94412 0.92896 0.92188 0.92477 0.89142 0.89278 0.90511 0.81414 0.79316 0.78935 0.92373 0.84484 0.94254 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 9.61 71.98 0.69 -5.37 16 2 C 0.17 7.85 5.65 86.38 0.49 8.34 16 3 N -0.61 -28.05 2.41 -701.99 -1.69 -29.74 16 4 C -0.24 -12.29 7.55 84.03 0.63 -11.66 16 5 H 0.07 3.44 7.99 -2.91 -0.02 3.42 16 6 C -0.04 -2.07 4.70 84.86 0.40 -1.67 16 7 N -0.90 -49.42 8.94 21.65 0.19 -49.23 16 8 Si 0.93 43.72 29.66 68.60 2.03 45.76 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 10 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.16 5.87 5.21 86.38 0.45 6.32 16 13 C -0.10 -3.39 2.29 -10.77 -0.02 -3.42 16 14 C -0.12 -3.16 5.36 30.67 0.16 -2.99 16 15 C 0.11 2.94 6.44 86.36 0.56 3.50 16 16 N -0.59 -17.18 2.97 -821.26 -2.44 -19.61 16 17 C 0.57 16.61 7.63 86.85 0.66 17.27 16 18 O -0.57 -18.52 15.80 -3.81 -0.06 -18.58 16 19 C 0.05 1.15 6.57 41.89 0.28 1.43 16 20 C -0.08 -1.42 9.63 22.60 0.22 -1.20 16 21 C -0.10 -1.33 10.15 22.48 0.23 -1.10 16 22 C 0.07 1.17 7.36 22.58 0.17 1.34 16 23 F -0.12 -1.95 17.28 44.97 0.78 -1.17 16 24 C 0.07 1.25 11.17 84.90 0.95 2.20 16 25 N -0.44 -10.42 6.17 -184.74 -1.14 -11.56 16 26 C 0.09 2.86 5.84 86.51 0.50 3.36 16 27 C -0.11 -3.98 4.97 30.82 0.15 -3.82 16 28 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.03 1.20 5.95 -2.39 -0.01 1.19 16 30 H 0.06 3.22 6.17 -2.39 -0.01 3.21 16 31 H 0.04 2.32 6.05 -2.39 -0.01 2.31 16 32 H 0.02 0.99 7.96 -2.39 -0.02 0.97 16 33 H 0.24 13.25 8.31 -92.70 -0.77 12.48 16 34 H 0.04 1.45 8.03 -2.38 -0.02 1.44 16 35 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 36 H 0.06 2.17 5.81 -2.38 -0.01 2.15 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 2.34 7.02 -2.38 -0.02 2.32 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.17 2.65 7.66 -2.91 -0.02 2.63 16 42 H 0.19 1.17 8.06 -2.92 -0.02 1.14 16 43 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.14 4.14 4.18 -53.48 -0.22 3.92 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 3.03 6.26 -2.39 -0.01 3.01 16 Total: -1.00 -61.36 368.97 4.97 -56.39 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.77 Total: 15.21 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.52 Total: 12.52 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -5.07 Total: -110.13 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.36 4.97 -56.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274945166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.748 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds