Wall clock time and date at job start Tue Mar 31 2020 18:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47119 * 2 1 4 4 C 1.35037 * 124.88591 * 112.31565 * 3 2 1 5 5 C 1.35361 * 107.22670 * 179.76056 * 4 3 2 6 6 C 1.41491 * 105.50722 * 0.35921 * 5 4 3 7 7 C 1.47715 * 126.52237 * 179.90097 * 6 5 4 8 8 O 1.21571 * 119.99493 * 354.98945 * 7 6 5 9 9 N 1.34779 * 120.00137 * 174.98754 * 7 6 5 10 10 C 1.46501 * 119.99782 * 185.34855 * 9 7 6 11 11 C 1.52996 * 109.46905 * 175.17428 * 10 9 7 12 12 N 1.46899 * 115.54626 * 260.28906 * 11 10 9 13 13 C 1.46902 * 111.00337 * 294.65486 * 12 11 10 14 14 C 1.50698 * 109.47391 * 184.71096 * 13 12 11 15 15 O 1.21290 * 120.00149 * 4.94509 * 14 13 12 16 16 N 1.34778 * 120.00003 * 184.94560 * 14 13 12 17 17 C 1.37102 * 119.99985 * 185.53722 * 16 14 13 18 18 H 1.07996 * 120.00045 * 5.15669 * 17 16 14 19 19 C 1.38952 * 119.99892 * 185.16445 * 17 16 14 20 20 N 1.31415 * 119.99817 * 354.89615 * 19 17 16 21 21 Si 1.86799 * 119.99814 * 174.89441 * 19 17 16 22 22 H 1.48492 * 109.47242 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46692 * 120.00068 * 21 19 17 24 24 H 1.48500 * 109.47087 * 239.99568 * 21 19 17 25 25 C 1.53001 * 117.50006 * 114.62368 * 11 10 9 26 26 C 1.52990 * 117.50377 * 45.95755 * 11 10 9 27 27 N 1.28464 * 124.88371 * 292.31235 * 3 2 1 28 28 H 1.08996 * 109.46779 * 65.01645 * 1 2 3 29 29 H 1.08997 * 109.47256 * 185.02409 * 1 2 3 30 30 H 1.09001 * 109.46414 * 305.02142 * 1 2 3 31 31 H 1.09001 * 109.46768 * 240.00082 * 2 1 3 32 32 H 1.08995 * 109.46887 * 120.00115 * 2 1 3 33 33 H 1.07997 * 126.38302 * 0.03186 * 4 3 2 34 34 H 1.08009 * 127.24301 * 180.24366 * 5 4 3 35 35 H 0.96994 * 119.99709 * 5.34728 * 9 7 6 36 36 H 1.09004 * 109.46923 * 295.16775 * 10 9 7 37 37 H 1.08995 * 109.47422 * 55.16615 * 10 9 7 38 38 H 1.00904 * 111.00416 * 170.69961 * 12 11 10 39 39 H 1.09004 * 109.47020 * 304.71003 * 13 12 11 40 40 H 1.08997 * 109.47621 * 64.70560 * 13 12 11 41 41 H 0.96998 * 119.99825 * 5.54174 * 16 14 13 42 42 H 0.97003 * 119.99263 * 185.00477 * 20 19 17 43 43 H 1.08997 * 117.49834 * 359.97438 * 25 11 10 44 44 H 1.09000 * 117.49884 * 145.01850 * 25 11 10 45 45 H 1.08998 * 117.50401 * 214.97765 * 26 11 10 46 46 H 1.09003 * 117.50242 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6724 1.9692 1.0247 5 6 2.9601 3.2355 0.6428 6 6 2.4315 3.3661 -0.6632 7 6 2.4862 4.5699 -1.5174 8 8 2.9450 5.6065 -1.0781 9 7 2.0275 4.5192 -2.7837 10 6 2.1879 5.6762 -3.6678 11 6 1.6952 5.3179 -5.0712 12 7 2.7423 4.9667 -6.0398 13 6 3.6063 6.1207 -6.3226 14 6 4.5927 5.7571 -7.4023 15 8 4.5206 4.6779 -7.9513 16 7 5.5551 6.6310 -7.7580 17 6 6.3808 6.3487 -8.8155 18 1 6.2080 5.4673 -9.4151 19 6 7.4400 7.1965 -9.1156 20 7 7.5912 8.3198 -8.4505 21 14 8.6489 6.7394 -10.4643 22 1 8.2596 5.4345 -11.0566 23 1 8.6330 7.7853 -11.5184 24 1 10.0146 6.6356 -9.8906 25 6 0.4648 6.0587 -5.5986 26 6 0.3549 4.5890 -5.1847 27 7 1.8861 2.2073 -0.9749 28 1 -0.3633 0.4340 -0.9315 29 1 -0.3633 -1.0237 0.0900 30 1 -0.3632 0.5898 0.8416 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.9234 1.5126 1.9707 34 1 3.4815 3.9885 1.2154 35 1 1.5912 3.7165 -3.1096 36 1 1.6057 6.5126 -3.2809 37 1 3.2404 5.9561 -3.7126 38 1 2.3407 4.5990 -6.8893 39 1 2.9949 6.9591 -6.6565 40 1 4.1452 6.4016 -5.4178 41 1 5.6636 7.4598 -7.2657 42 1 8.2863 8.9457 -8.7076 43 1 0.0061 6.8011 -4.9455 44 1 0.4320 6.2851 -6.6643 45 1 0.2498 3.8493 -5.9784 46 1 -0.1759 4.3643 -4.2595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277188993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:19 Heat of formation + Delta-G solvation = 38.142041 kcal Electronic energy + Delta-G solvation = -27907.127879 eV Core-core repulsion = 23834.620859 eV Total energy + Delta-G solvation = -4072.507020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87151 -39.73814 -38.62234 -37.71273 -34.93528 -34.24259 -33.91380 -32.53337 -31.16910 -30.98365 -30.41164 -27.48756 -26.49777 -24.75680 -24.03946 -22.81021 -22.28202 -21.57720 -20.02108 -19.64296 -19.22377 -18.06383 -17.86188 -16.92490 -16.49916 -16.19652 -15.96581 -15.32280 -15.27072 -14.97216 -14.67983 -14.42217 -14.23293 -14.02072 -13.88593 -13.75922 -13.23834 -13.18066 -12.97946 -12.66932 -12.56558 -12.47012 -12.14289 -11.89967 -11.68794 -11.57997 -11.46087 -11.10521 -11.08358 -10.77762 -10.38044 -10.33123 -10.21462 -10.04166 -9.51209 -9.49329 -9.30897 -8.99673 -8.41951 -8.05491 -7.94177 -6.38667 -3.80606 1.43538 1.93983 2.13574 3.03986 3.17902 3.28748 3.35809 3.40873 3.66479 3.90598 3.96830 4.11572 4.30141 4.37174 4.48659 4.50700 4.54077 4.64426 4.70673 4.87310 4.96677 5.10402 5.13495 5.23525 5.26892 5.43823 5.51572 5.54236 5.54927 5.60111 5.63557 5.77689 5.83733 5.89897 6.00258 6.04348 6.17672 6.28878 6.41343 6.49574 7.18053 7.42422 7.57541 7.62035 7.74303 8.07760 8.20732 8.62675 9.19176 9.55707 10.06108 10.78019 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002138 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.961923 B =13094.768664 C =13572.272526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.282 5.282 4 C -0.021 4.021 5 C -0.178 4.178 6 C -0.015 4.015 7 C 0.603 3.397 8 O -0.535 6.535 9 N -0.708 5.708 10 C 0.165 3.835 11 C 0.041 3.959 12 N -0.628 5.628 13 C 0.049 3.951 14 C 0.441 3.559 15 O -0.587 6.587 16 N -0.562 5.562 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.899 5.899 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.206 4.206 26 C -0.168 4.168 27 N -0.258 5.258 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.356 0.644 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.393 0.607 42 H 0.271 0.729 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 -12.508 19.575 28.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.071 5.071 4 C -0.164 4.164 5 C -0.206 4.206 6 C -0.175 4.175 7 C 0.388 3.612 8 O -0.410 6.410 9 N -0.360 5.360 10 C 0.041 3.959 11 C -0.053 4.053 12 N -0.260 5.260 13 C -0.083 4.083 14 C 0.227 3.773 15 O -0.471 6.471 16 N -0.198 5.198 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.540 5.540 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.246 4.246 26 C -0.206 4.206 27 N -0.094 5.094 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.244 0.756 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.177 0.823 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.384 -13.306 19.102 28.467 hybrid contribution 0.377 0.838 -0.429 1.013 sum -16.007 -12.469 18.674 27.575 Atomic orbital electron populations 1.22127 0.93303 1.03392 1.03864 1.22019 0.96381 0.76868 1.05164 1.45622 1.40131 1.11476 1.09882 1.22871 1.02817 0.94800 0.95889 1.21789 1.06113 0.97112 0.95634 1.21952 1.05857 0.93162 0.96556 1.16871 0.77736 0.85653 0.80971 1.90804 1.46387 1.30184 1.73592 1.45815 1.60093 1.18612 1.11451 1.20771 1.02643 0.87409 0.85088 1.21850 0.85693 1.03636 0.94108 1.59933 1.19335 1.30344 1.16368 1.21703 0.95402 0.91987 0.99246 1.19773 0.84982 0.86022 0.86526 1.90517 1.75474 1.23215 1.57941 1.41847 1.28977 1.19382 1.29609 1.19743 1.06102 1.10348 1.06689 0.87942 1.25287 0.97900 0.95707 0.99057 1.69617 1.34651 1.09225 1.40550 0.85804 0.79960 0.78689 0.79900 1.19246 1.20825 1.20673 1.23689 1.03555 0.95104 1.02286 1.23146 0.98224 0.95559 1.03687 1.73472 1.20964 1.00233 1.14747 0.90942 0.90155 0.91848 0.88390 0.87847 0.80182 0.82022 0.75611 0.90775 0.89729 0.82277 0.93189 0.89447 0.77377 0.91860 0.88390 0.88399 0.88079 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.19 37.16 0.38 -0.28 16 2 C 0.12 0.50 7.07 -4.04 -0.03 0.47 16 3 N -0.28 -2.38 3.32 -61.33 -0.20 -2.58 16 4 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 5 C -0.18 -1.93 10.81 -39.37 -0.43 -2.36 16 6 C -0.02 -0.20 7.13 -82.76 -0.59 -0.79 16 7 C 0.60 8.92 7.82 -12.39 -0.10 8.82 16 8 O -0.53 -9.42 16.94 5.30 0.09 -9.33 16 9 N -0.71 -9.26 5.35 -61.29 -0.33 -9.59 16 10 C 0.16 2.20 5.79 -4.04 -0.02 2.17 16 11 C 0.04 0.52 2.08 -131.61 -0.27 0.25 16 12 N -0.63 -10.35 6.42 -101.23 -0.65 -11.00 16 13 C 0.05 0.89 5.95 -4.98 -0.03 0.86 16 14 C 0.44 10.62 7.81 -10.99 -0.09 10.54 16 15 O -0.59 -16.09 15.65 5.55 0.09 -16.01 16 16 N -0.56 -14.54 5.28 -10.96 -0.06 -14.60 16 17 C -0.30 -8.48 9.66 -14.93 -0.14 -8.62 16 18 H 0.10 3.04 7.20 -52.49 -0.38 2.66 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.89 13.06 55.50 0.72 -24.16 16 21 Si 0.93 21.37 29.56 -169.99 -5.02 16.35 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.21 -2.23 10.03 -26.69 -0.27 -2.50 16 26 C -0.17 -1.74 9.17 -26.70 -0.24 -1.98 16 27 N -0.26 -2.95 11.63 33.42 0.39 -2.56 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.15 8.05 -51.93 -0.42 -0.27 16 33 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.16 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.41 4.85 7.20 -40.82 -0.29 4.56 16 36 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 37 H 0.08 1.30 6.64 -51.93 -0.34 0.96 16 38 H 0.36 6.06 8.05 -39.29 -0.32 5.74 16 39 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.09 1.53 6.82 -51.93 -0.35 1.17 16 41 H 0.39 9.76 7.92 -40.82 -0.32 9.44 16 42 H 0.27 7.08 8.32 -40.82 -0.34 6.74 16 43 H 0.10 0.95 8.04 -51.93 -0.42 0.53 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.10 0.90 7.70 -51.93 -0.40 0.50 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -35.55 395.78 -7.72 -43.27 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -6.59 Total: 17.51 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.12 Total: 6.73 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.13 Total: -64.48 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.18 Total: -25.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.55 -7.72 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277188993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.416 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds