Wall clock time and date at job start Tue Mar 31 2020 18:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47119 * 2 1 4 4 C 1.35037 * 124.88591 * 112.31565 * 3 2 1 5 5 C 1.35361 * 107.22670 * 179.76056 * 4 3 2 6 6 C 1.41491 * 105.50722 * 0.35921 * 5 4 3 7 7 C 1.47715 * 126.52237 * 179.90097 * 6 5 4 8 8 O 1.21571 * 119.99493 * 354.98945 * 7 6 5 9 9 N 1.34779 * 120.00137 * 174.98754 * 7 6 5 10 10 C 1.46501 * 119.99782 * 185.34855 * 9 7 6 11 11 C 1.52996 * 109.46905 * 175.17428 * 10 9 7 12 12 N 1.46899 * 115.54626 * 260.28906 * 11 10 9 13 13 C 1.46902 * 111.00337 * 294.65486 * 12 11 10 14 14 C 1.50698 * 109.47391 * 184.71096 * 13 12 11 15 15 O 1.21290 * 120.00149 * 4.94509 * 14 13 12 16 16 N 1.34778 * 120.00003 * 184.94560 * 14 13 12 17 17 C 1.37102 * 119.99985 * 185.53722 * 16 14 13 18 18 H 1.07996 * 120.00045 * 5.15669 * 17 16 14 19 19 C 1.38952 * 119.99892 * 185.16445 * 17 16 14 20 20 N 1.31415 * 119.99817 * 354.89615 * 19 17 16 21 21 Si 1.86799 * 119.99814 * 174.89441 * 19 17 16 22 22 H 1.48492 * 109.47242 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46692 * 120.00068 * 21 19 17 24 24 H 1.48500 * 109.47087 * 239.99568 * 21 19 17 25 25 C 1.53001 * 117.50006 * 114.62368 * 11 10 9 26 26 C 1.52990 * 117.50377 * 45.95755 * 11 10 9 27 27 N 1.28464 * 124.88371 * 292.31235 * 3 2 1 28 28 H 1.08996 * 109.46779 * 65.01645 * 1 2 3 29 29 H 1.08997 * 109.47256 * 185.02409 * 1 2 3 30 30 H 1.09001 * 109.46414 * 305.02142 * 1 2 3 31 31 H 1.09001 * 109.46768 * 240.00082 * 2 1 3 32 32 H 1.08995 * 109.46887 * 120.00115 * 2 1 3 33 33 H 1.07997 * 126.38302 * 0.03186 * 4 3 2 34 34 H 1.08009 * 127.24301 * 180.24366 * 5 4 3 35 35 H 0.96994 * 119.99709 * 5.34728 * 9 7 6 36 36 H 1.09004 * 109.46923 * 295.16775 * 10 9 7 37 37 H 1.08995 * 109.47422 * 55.16615 * 10 9 7 38 38 H 1.00904 * 111.00416 * 170.69961 * 12 11 10 39 39 H 1.09004 * 109.47020 * 304.71003 * 13 12 11 40 40 H 1.08997 * 109.47621 * 64.70560 * 13 12 11 41 41 H 0.96998 * 119.99825 * 5.54174 * 16 14 13 42 42 H 0.97003 * 119.99263 * 185.00477 * 20 19 17 43 43 H 1.08997 * 117.49834 * 359.97438 * 25 11 10 44 44 H 1.09000 * 117.49884 * 145.01850 * 25 11 10 45 45 H 1.08998 * 117.50401 * 214.97765 * 26 11 10 46 46 H 1.09003 * 117.50242 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6724 1.9692 1.0247 5 6 2.9601 3.2355 0.6428 6 6 2.4315 3.3661 -0.6632 7 6 2.4862 4.5699 -1.5174 8 8 2.9450 5.6065 -1.0781 9 7 2.0275 4.5192 -2.7837 10 6 2.1879 5.6762 -3.6678 11 6 1.6952 5.3179 -5.0712 12 7 2.7423 4.9667 -6.0398 13 6 3.6063 6.1207 -6.3226 14 6 4.5927 5.7571 -7.4023 15 8 4.5206 4.6779 -7.9513 16 7 5.5551 6.6310 -7.7580 17 6 6.3808 6.3487 -8.8155 18 1 6.2080 5.4673 -9.4151 19 6 7.4400 7.1965 -9.1156 20 7 7.5912 8.3198 -8.4505 21 14 8.6489 6.7394 -10.4643 22 1 8.2596 5.4345 -11.0566 23 1 8.6330 7.7853 -11.5184 24 1 10.0146 6.6356 -9.8906 25 6 0.4648 6.0587 -5.5986 26 6 0.3549 4.5890 -5.1847 27 7 1.8861 2.2073 -0.9749 28 1 -0.3633 0.4340 -0.9315 29 1 -0.3633 -1.0237 0.0900 30 1 -0.3632 0.5898 0.8416 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.9234 1.5126 1.9707 34 1 3.4815 3.9885 1.2154 35 1 1.5912 3.7165 -3.1096 36 1 1.6057 6.5126 -3.2809 37 1 3.2404 5.9561 -3.7126 38 1 2.3407 4.5990 -6.8893 39 1 2.9949 6.9591 -6.6565 40 1 4.1452 6.4016 -5.4178 41 1 5.6636 7.4598 -7.2657 42 1 8.2863 8.9457 -8.7076 43 1 0.0061 6.8011 -4.9455 44 1 0.4320 6.2851 -6.6643 45 1 0.2498 3.8493 -5.9784 46 1 -0.1759 4.3643 -4.2595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277188993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:18 Heat of formation + Delta-G solvation = 9.965153 kcal Electronic energy + Delta-G solvation = -27908.349721 eV Core-core repulsion = 23834.620859 eV Total energy + Delta-G solvation = -4073.728862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59733 -40.88070 -40.18348 -39.15886 -36.06469 -35.48710 -35.24269 -33.90937 -33.22354 -31.71830 -31.03732 -28.52219 -28.17740 -25.89764 -25.41883 -23.62856 -23.07586 -22.26555 -21.17656 -20.98927 -20.61687 -19.93707 -18.86097 -18.01569 -17.62365 -17.15471 -17.06249 -16.83772 -16.41851 -16.35436 -15.87671 -15.73340 -15.51348 -15.35305 -14.92620 -14.66384 -14.46765 -14.19916 -14.00683 -13.82477 -13.60682 -13.50434 -13.28176 -13.00980 -12.94456 -12.89690 -12.44643 -12.43848 -12.26248 -12.12551 -11.88065 -11.85505 -11.52922 -11.41143 -11.14221 -10.38716 -10.33864 -10.12465 -10.04443 -9.94449 -9.30016 -8.47606 -5.97900 0.53524 1.22084 1.34892 1.40709 1.55185 1.56427 1.99574 2.07391 2.26126 2.38328 2.60922 3.01476 3.18062 3.35621 3.39830 3.56923 3.72477 3.90903 3.98229 4.00362 4.07273 4.24955 4.27973 4.38736 4.45343 4.50999 4.54238 4.64306 4.72321 4.74625 4.77045 4.80921 4.83240 4.90219 4.95672 5.17416 5.23752 5.31699 5.39339 5.39979 5.83344 5.92698 6.03875 6.31425 6.43179 6.56441 6.91884 7.09259 7.14420 7.51936 8.05696 8.69097 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002138 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.961923 B =13094.768664 C =13572.272526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.276 5.276 4 C 0.001 3.999 5 C -0.207 4.207 6 C -0.049 4.049 7 C 0.598 3.402 8 O -0.575 6.575 9 N -0.699 5.699 10 C 0.168 3.832 11 C 0.021 3.979 12 N -0.641 5.641 13 C 0.065 3.935 14 C 0.439 3.561 15 O -0.623 6.623 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.919 5.919 21 Si 0.995 3.005 22 H -0.272 1.272 23 H -0.268 1.268 24 H -0.273 1.273 25 C -0.192 4.192 26 C -0.150 4.150 27 N -0.272 5.272 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.228 0.772 34 H 0.161 0.839 35 H 0.414 0.586 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.352 0.648 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.715 -13.953 20.735 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.235 4.235 6 C -0.208 4.208 7 C 0.384 3.616 8 O -0.453 6.453 9 N -0.351 5.351 10 C 0.044 3.956 11 C -0.071 4.071 12 N -0.273 5.273 13 C -0.067 4.067 14 C 0.227 3.773 15 O -0.510 6.510 16 N -0.209 5.209 17 C -0.463 4.463 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.560 5.560 21 Si 0.818 3.182 22 H -0.197 1.197 23 H -0.193 1.193 24 H -0.198 1.198 25 C -0.232 4.232 26 C -0.188 4.188 27 N -0.110 5.110 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.160 0.840 33 H 0.244 0.756 34 H 0.178 0.822 35 H 0.251 0.749 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.173 0.827 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.133 0.867 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.420 -14.753 20.262 30.523 hybrid contribution 0.613 1.168 -0.716 1.501 sum -16.807 -13.585 19.547 29.139 Atomic orbital electron populations 1.22101 0.93003 1.04644 1.02506 1.22481 0.96652 0.74862 1.07271 1.46127 1.38904 1.12313 1.09207 1.23486 1.00367 0.93516 0.96781 1.22007 1.07382 0.98878 0.95272 1.21840 1.08167 0.93266 0.97480 1.17239 0.77023 0.85944 0.81394 1.90761 1.48301 1.31768 1.74450 1.45783 1.59541 1.18745 1.10998 1.20706 1.01334 0.87892 0.85671 1.21772 0.85736 1.06789 0.92809 1.59880 1.20841 1.29923 1.16627 1.21508 0.94656 0.93326 0.97164 1.20764 0.84833 0.84988 0.86761 1.90481 1.76364 1.24714 1.59450 1.41927 1.29530 1.19901 1.29510 1.19717 1.07988 1.10500 1.08104 0.90204 1.26109 0.98819 0.95326 1.01190 1.69681 1.35174 1.09703 1.41467 0.84845 0.77556 0.78399 0.77361 1.19695 1.19260 1.19829 1.23725 1.01128 0.95856 1.02479 1.23246 0.95519 0.95495 1.04496 1.73407 1.21291 1.00181 1.16089 0.93038 0.87713 0.92297 0.88135 0.83958 0.75593 0.82171 0.74918 0.89686 0.92268 0.82731 0.90992 0.88764 0.77022 0.91213 0.86729 0.88494 0.87634 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.19 71.98 0.73 -0.18 16 2 C 0.11 0.60 7.07 86.38 0.61 1.21 16 3 N -0.28 -4.10 3.32 -347.95 -1.16 -5.25 16 4 C 0.00 0.02 11.40 83.54 0.95 0.97 16 5 C -0.21 -4.43 10.81 22.41 0.24 -4.19 16 6 C -0.05 -1.30 7.13 42.45 0.30 -0.99 16 7 C 0.60 18.38 7.82 86.75 0.68 19.06 16 8 O -0.57 -21.29 16.94 -3.94 -0.07 -21.36 16 9 N -0.70 -18.58 5.35 -466.10 -2.49 -21.08 16 10 C 0.17 4.50 5.79 86.38 0.50 5.00 16 11 C 0.02 0.53 2.08 3.52 0.01 0.54 16 12 N -0.64 -21.13 6.42 -474.17 -3.04 -24.17 16 13 C 0.07 2.39 5.95 85.56 0.51 2.90 16 14 C 0.44 21.67 7.81 87.66 0.68 22.35 16 15 O -0.62 -35.23 15.65 -3.06 -0.05 -35.28 16 16 N -0.57 -30.43 5.28 -306.98 -1.62 -32.05 16 17 C -0.33 -19.41 9.66 84.04 0.81 -18.60 16 18 H 0.08 4.92 7.20 -2.91 -0.02 4.90 16 19 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 20 N -0.92 -50.94 13.06 21.66 0.28 -50.66 16 21 Si 0.99 43.87 29.56 68.60 2.03 45.90 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.19 -3.77 10.03 30.62 0.31 -3.46 16 26 C -0.15 -2.82 9.17 30.62 0.28 -2.54 16 27 N -0.27 -6.07 11.63 -48.18 -0.56 -6.63 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.14 -0.26 8.05 -2.39 -0.02 -0.28 16 33 H 0.23 0.66 8.06 -2.91 -0.02 0.63 16 34 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.41 9.82 7.20 -92.71 -0.67 9.15 16 36 H 0.09 2.08 7.88 -2.38 -0.02 2.06 16 37 H 0.06 1.89 6.64 -2.39 -0.02 1.88 16 38 H 0.35 12.00 8.05 -89.69 -0.72 11.28 16 39 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 40 H 0.09 3.35 6.82 -2.39 -0.02 3.33 16 41 H 0.40 20.18 7.92 -92.71 -0.73 19.45 16 42 H 0.28 14.36 8.32 -92.71 -0.77 13.59 16 43 H 0.11 1.91 8.04 -2.39 -0.02 1.89 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.12 1.84 7.70 -2.39 -0.02 1.82 16 Total: -1.00 -80.27 395.78 -0.67 -80.95 By element: Atomic # 1 Polarization: 48.97 SS G_CDS: -1.08 Total: 47.88 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 7.09 Total: 21.75 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -8.59 Total: -139.84 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.11 Total: -56.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -80.27 -0.67 -80.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277188993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.914 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds