Wall clock time and date at job start Tue Mar 31 2020 18:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.50699 * 109.47256 * 239.99980 * 2 1 3 5 5 O 1.21275 * 119.99699 * 240.00495 * 4 2 1 6 6 N 1.34776 * 119.99882 * 59.99870 * 4 2 1 7 7 C 1.46499 * 119.99975 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.87529 * 328.85307 * 7 6 4 9 9 C 1.55400 * 111.05553 * 92.58808 * 7 6 4 10 10 C 1.54323 * 102.89803 * 153.65194 * 9 7 6 11 11 N 1.47441 * 107.37092 * 337.89564 * 10 9 7 12 12 C 1.46899 * 110.99964 * 236.66280 * 11 10 9 13 13 C 1.50699 * 109.47326 * 176.64981 * 12 11 10 14 14 O 1.21299 * 119.99842 * 6.12626 * 13 12 11 15 15 N 1.34771 * 120.00290 * 186.12786 * 13 12 11 16 16 C 1.37095 * 120.00152 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99930 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00076 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00099 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47198 * 90.00248 * 20 18 16 22 22 H 1.48508 * 109.47113 * 210.00232 * 20 18 16 23 23 H 1.48497 * 109.46968 * 329.99998 * 20 18 16 24 24 C 1.47848 * 108.56525 * 358.92790 * 11 10 9 25 25 N 1.46504 * 109.46746 * 119.99934 * 2 1 3 26 26 C 1.34945 * 126.03684 * 34.71271 * 25 2 1 27 27 C 1.35315 * 107.74361 * 179.83580 * 26 25 2 28 28 C 1.39868 * 107.92009 * 0.43013 * 27 26 25 29 29 N 1.30838 * 108.20515 * 359.73286 * 28 27 26 30 30 H 1.09000 * 109.47645 * 300.00505 * 1 2 3 31 31 H 1.09000 * 109.47108 * 60.00120 * 1 2 3 32 32 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99941 * 0.02562 * 6 4 2 34 34 H 1.08996 * 110.67803 * 35.34744 * 9 7 6 35 35 H 1.09000 * 110.84698 * 272.03452 * 9 7 6 36 36 H 1.08995 * 109.88817 * 218.40442 * 10 9 7 37 37 H 1.09003 * 109.88542 * 97.38072 * 10 9 7 38 38 H 1.09007 * 109.46960 * 296.64772 * 12 11 10 39 39 H 1.08998 * 109.47400 * 56.64670 * 12 11 10 40 40 H 0.97003 * 120.00050 * 359.97438 * 15 13 12 41 41 H 0.96998 * 119.99737 * 179.97438 * 19 18 16 42 42 H 1.09008 * 110.36952 * 142.92768 * 24 11 10 43 43 H 1.08991 * 110.37321 * 265.26505 * 24 11 10 44 44 H 1.07994 * 126.12822 * 0.02562 * 26 25 2 45 45 H 1.07997 * 126.04237 * 180.16472 * 27 26 25 46 46 H 1.07998 * 125.89901 * 179.75696 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7295 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1956 -0.9402 -3.6507 8 1 3.1663 -1.3999 -3.4645 9 6 1.1684 -1.9966 -4.1446 10 6 1.4758 -2.0966 -5.6536 11 7 2.1571 -0.8498 -6.0477 12 6 1.4352 -0.1767 -7.1357 13 6 2.1131 1.1309 -7.4548 14 8 3.1613 1.4179 -6.9161 15 7 1.5547 1.9813 -8.3387 16 6 2.1711 3.1711 -8.6285 17 1 3.1044 3.4266 -8.1489 18 6 1.5957 4.0477 -9.5402 19 7 0.4603 3.7365 -10.1242 20 14 2.4360 5.6684 -9.9357 21 1 3.3630 5.4791 -11.0802 22 1 1.4116 6.6833 -10.2910 23 1 3.2011 6.1315 -8.7503 24 6 2.2615 0.0250 -4.8604 25 7 2.0183 -0.6906 1.1962 26 6 1.4371 -1.7525 1.7927 27 6 2.1965 -2.0928 2.8597 28 6 3.2733 -1.2024 2.9231 29 7 3.1676 -0.3614 1.9264 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.1494 0.5389 -2.5435 34 1 0.1488 -1.6477 -3.9813 35 1 1.3320 -2.9559 -3.6536 36 1 0.5477 -2.2053 -6.2147 37 1 2.1260 -2.9505 -5.8438 38 1 1.4373 -0.8126 -8.0211 39 1 0.4072 0.0129 -6.8270 40 1 0.7166 1.7517 -8.7697 41 1 0.0584 4.3486 -10.7603 42 1 3.2105 0.5614 -4.8666 43 1 1.4281 0.7269 -4.8318 44 1 0.5304 -2.2446 1.4736 45 1 2.0027 -2.9053 3.5443 46 1 4.0570 -1.2084 3.6662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316969605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:34 Heat of formation + Delta-G solvation = 26.320658 kcal Electronic energy + Delta-G solvation = -28500.126845 eV Core-core repulsion = 24427.107212 eV Total energy + Delta-G solvation = -4073.019634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54445 -40.15397 -39.00412 -37.51678 -34.97717 -34.55975 -33.90206 -31.42236 -30.97040 -30.28147 -29.75541 -28.42637 -26.67499 -25.21521 -24.21306 -22.25628 -21.28005 -21.16488 -20.79170 -20.12402 -19.23204 -18.03316 -17.91365 -17.48714 -16.40628 -16.16229 -15.59202 -15.29957 -15.05644 -14.69347 -14.57589 -14.34966 -14.22573 -13.93752 -13.83317 -13.42454 -13.32591 -13.15881 -13.01203 -12.97533 -12.77442 -12.43324 -12.13088 -11.89832 -11.83694 -11.55909 -11.41886 -11.21681 -10.96223 -10.88387 -10.79420 -10.43533 -10.33442 -10.26951 -9.58593 -9.55174 -9.28886 -8.79132 -8.46282 -8.05320 -7.96589 -6.47135 -3.88068 1.61826 2.07474 2.24266 2.69866 2.88547 3.13991 3.23202 3.28548 3.83984 3.95218 4.04713 4.17564 4.29829 4.39318 4.54301 4.61664 4.63064 4.72795 4.91521 4.95023 5.06346 5.07571 5.19488 5.28837 5.30563 5.34687 5.40403 5.56107 5.58094 5.73193 5.76176 5.81341 5.86060 5.91983 6.04608 6.20213 6.27120 6.42686 6.44253 6.71399 7.12072 7.16459 7.20902 7.50173 7.50742 7.86774 8.00412 8.55551 9.12536 9.48100 9.99467 10.70442 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002155 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.032151 B =12991.369193 C =13794.193997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.130 0.870 4 C 0.503 3.497 5 O -0.519 6.519 6 N -0.712 5.712 7 C 0.131 3.869 8 H 0.106 0.894 9 C -0.151 4.151 10 C 0.041 3.959 11 N -0.504 5.504 12 C 0.041 3.959 13 C 0.439 3.561 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.053 3.947 25 N -0.355 5.355 26 C 0.067 3.933 27 C -0.275 4.275 28 C 0.047 3.953 29 N -0.290 5.290 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.402 0.598 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.169 0.831 45 H 0.147 0.853 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 -10.637 20.084 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.148 0.852 4 C 0.287 3.713 5 O -0.394 6.394 6 N -0.364 5.364 7 C 0.025 3.975 8 H 0.124 0.876 9 C -0.190 4.190 10 C -0.087 4.087 11 N -0.228 5.228 12 C -0.090 4.090 13 C 0.225 3.775 14 O -0.463 6.463 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.075 4.075 25 N -0.137 5.137 26 C -0.078 4.078 27 C -0.304 4.304 28 C -0.140 4.140 29 N -0.110 5.110 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.124 0.876 43 H 0.065 0.935 44 H 0.186 0.814 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.374 -10.085 19.469 22.358 hybrid contribution -1.700 0.466 -0.094 1.766 sum -6.075 -9.619 19.375 22.468 Atomic orbital electron populations 1.22166 0.90455 1.04350 1.04930 1.21099 0.96141 0.97907 0.81301 0.85232 1.20684 0.80840 0.85173 0.84650 1.90771 1.36561 1.25701 1.86325 1.45848 1.53513 1.31994 1.05080 1.22353 0.98399 0.93082 0.83639 0.87642 1.23188 0.99193 1.00129 0.96525 1.22852 0.97924 0.94195 0.93725 1.63332 1.48624 1.04043 1.06822 1.22145 0.95138 0.96043 0.95698 1.19737 0.87580 0.85829 0.84387 1.90514 1.24098 1.77008 1.54673 1.41866 1.23171 1.17134 1.37750 1.19694 1.06942 0.93659 1.22567 0.87893 1.25270 0.96136 1.00016 0.96519 1.69611 1.17783 1.37945 1.28908 0.85857 0.78617 0.80824 0.79000 1.20349 1.20932 1.19421 1.23239 1.03852 0.93888 0.86510 1.48173 1.19609 1.24693 1.21229 1.22398 0.99801 0.90799 0.94851 1.21462 0.99203 1.06263 1.03494 1.23883 0.99126 0.93940 0.97069 1.77390 1.02011 1.24388 1.07241 0.89967 0.89142 0.90845 0.76290 0.91282 0.90483 0.92389 0.90161 0.88967 0.93491 0.77493 0.91843 0.87556 0.93545 0.81380 0.83539 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.72 37.16 0.32 -0.49 16 2 C 0.14 1.26 3.73 -69.08 -0.26 1.00 16 3 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.50 5.85 7.22 -10.99 -0.08 5.77 16 5 O -0.52 -8.36 16.06 5.56 0.09 -8.27 16 6 N -0.71 -7.28 5.09 -51.61 -0.26 -7.54 16 7 C 0.13 1.65 3.41 -65.65 -0.22 1.42 16 8 H 0.11 1.57 7.54 -51.93 -0.39 1.18 16 9 C -0.15 -1.65 6.67 -24.76 -0.17 -1.81 16 10 C 0.04 0.50 6.89 -2.83 -0.02 0.48 16 11 N -0.50 -8.05 5.07 -232.69 -1.18 -9.22 16 12 C 0.04 0.70 5.07 -4.98 -0.03 0.68 16 13 C 0.44 9.96 7.34 -10.99 -0.08 9.87 16 14 O -0.58 -15.01 13.89 5.54 0.08 -14.94 16 15 N -0.56 -13.78 5.29 -10.97 -0.06 -13.84 16 16 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 20 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.05 0.82 4.92 -2.30 -0.01 0.81 16 25 N -0.35 -3.97 3.02 -55.99 -0.17 -4.13 16 26 C 0.07 0.64 10.58 -17.22 -0.18 0.46 16 27 C -0.27 -2.58 10.80 -40.01 -0.43 -3.01 16 28 C 0.05 0.49 12.03 -17.37 -0.21 0.28 16 29 N -0.29 -3.79 12.58 30.62 0.39 -3.40 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.31 7.56 -51.93 -0.39 -0.09 16 32 H 0.07 0.36 7.15 -51.93 -0.37 -0.02 16 33 H 0.40 3.08 7.98 -40.82 -0.33 2.75 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.63 7.58 -51.93 -0.39 0.23 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.11 1.98 6.94 -51.92 -0.36 1.62 16 43 H 0.05 0.70 7.60 -51.93 -0.39 0.31 16 44 H 0.17 1.09 7.26 -52.49 -0.38 0.71 16 45 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -35.53 383.56 -7.89 -43.42 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.65 Total: 12.06 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -1.60 Total: 7.69 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.56 Total: -61.37 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.53 -7.89 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316969605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.741 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds