Wall clock time and date at job start Tue Mar 31 2020 18:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.50699 * 109.47256 * 239.99980 * 2 1 3 5 5 O 1.21275 * 119.99699 * 240.00495 * 4 2 1 6 6 N 1.34776 * 119.99882 * 59.99870 * 4 2 1 7 7 C 1.46499 * 119.99975 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.87529 * 328.85307 * 7 6 4 9 9 C 1.55400 * 111.05553 * 92.58808 * 7 6 4 10 10 C 1.54323 * 102.89803 * 153.65194 * 9 7 6 11 11 N 1.47441 * 107.37092 * 337.89564 * 10 9 7 12 12 C 1.46899 * 110.99964 * 236.66280 * 11 10 9 13 13 C 1.50699 * 109.47326 * 176.64981 * 12 11 10 14 14 O 1.21299 * 119.99842 * 6.12626 * 13 12 11 15 15 N 1.34771 * 120.00290 * 186.12786 * 13 12 11 16 16 C 1.37095 * 120.00152 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99930 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00076 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00099 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47198 * 90.00248 * 20 18 16 22 22 H 1.48508 * 109.47113 * 210.00232 * 20 18 16 23 23 H 1.48497 * 109.46968 * 329.99998 * 20 18 16 24 24 C 1.47848 * 108.56525 * 358.92790 * 11 10 9 25 25 N 1.46504 * 109.46746 * 119.99934 * 2 1 3 26 26 C 1.34945 * 126.03684 * 34.71271 * 25 2 1 27 27 C 1.35315 * 107.74361 * 179.83580 * 26 25 2 28 28 C 1.39868 * 107.92009 * 0.43013 * 27 26 25 29 29 N 1.30838 * 108.20515 * 359.73286 * 28 27 26 30 30 H 1.09000 * 109.47645 * 300.00505 * 1 2 3 31 31 H 1.09000 * 109.47108 * 60.00120 * 1 2 3 32 32 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99941 * 0.02562 * 6 4 2 34 34 H 1.08996 * 110.67803 * 35.34744 * 9 7 6 35 35 H 1.09000 * 110.84698 * 272.03452 * 9 7 6 36 36 H 1.08995 * 109.88817 * 218.40442 * 10 9 7 37 37 H 1.09003 * 109.88542 * 97.38072 * 10 9 7 38 38 H 1.09007 * 109.46960 * 296.64772 * 12 11 10 39 39 H 1.08998 * 109.47400 * 56.64670 * 12 11 10 40 40 H 0.97003 * 120.00050 * 359.97438 * 15 13 12 41 41 H 0.96998 * 119.99737 * 179.97438 * 19 18 16 42 42 H 1.09008 * 110.36952 * 142.92768 * 24 11 10 43 43 H 1.08991 * 110.37321 * 265.26505 * 24 11 10 44 44 H 1.07994 * 126.12822 * 0.02562 * 26 25 2 45 45 H 1.07997 * 126.04237 * 180.16472 * 27 26 25 46 46 H 1.07998 * 125.89901 * 179.75696 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7295 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1956 -0.9402 -3.6507 8 1 3.1663 -1.3999 -3.4645 9 6 1.1684 -1.9966 -4.1446 10 6 1.4758 -2.0966 -5.6536 11 7 2.1571 -0.8498 -6.0477 12 6 1.4352 -0.1767 -7.1357 13 6 2.1131 1.1309 -7.4548 14 8 3.1613 1.4179 -6.9161 15 7 1.5547 1.9813 -8.3387 16 6 2.1711 3.1711 -8.6285 17 1 3.1044 3.4266 -8.1489 18 6 1.5957 4.0477 -9.5402 19 7 0.4603 3.7365 -10.1242 20 14 2.4360 5.6684 -9.9357 21 1 3.3630 5.4791 -11.0802 22 1 1.4116 6.6833 -10.2910 23 1 3.2011 6.1315 -8.7503 24 6 2.2615 0.0250 -4.8604 25 7 2.0183 -0.6906 1.1962 26 6 1.4371 -1.7525 1.7927 27 6 2.1965 -2.0928 2.8597 28 6 3.2733 -1.2024 2.9231 29 7 3.1676 -0.3614 1.9264 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.1494 0.5389 -2.5435 34 1 0.1488 -1.6477 -3.9813 35 1 1.3320 -2.9559 -3.6536 36 1 0.5477 -2.2053 -6.2147 37 1 2.1260 -2.9505 -5.8438 38 1 1.4373 -0.8126 -8.0211 39 1 0.4072 0.0129 -6.8270 40 1 0.7166 1.7517 -8.7697 41 1 0.0584 4.3486 -10.7603 42 1 3.2105 0.5614 -4.8666 43 1 1.4281 0.7269 -4.8318 44 1 0.5304 -2.2446 1.4736 45 1 2.0027 -2.9053 3.5443 46 1 4.0570 -1.2084 3.6662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316969605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:33 Heat of formation + Delta-G solvation = -1.988820 kcal Electronic energy + Delta-G solvation = -28501.354437 eV Core-core repulsion = 24427.107212 eV Total energy + Delta-G solvation = -4074.247225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30235 -41.19020 -40.37997 -39.00537 -36.03730 -35.76997 -35.38046 -33.30274 -32.19184 -31.04171 -30.46887 -29.47139 -28.16498 -26.19801 -25.65559 -23.15598 -22.33394 -21.99848 -21.76657 -21.12020 -20.80896 -19.86280 -18.85758 -18.32046 -17.77330 -17.34277 -16.68877 -16.47080 -16.38736 -16.09777 -15.84138 -15.63000 -15.36604 -15.05989 -14.65162 -14.48966 -14.44397 -14.36007 -13.95234 -13.78925 -13.56856 -13.48811 -13.34138 -13.22970 -12.95537 -12.84094 -12.64139 -12.51946 -12.41666 -12.31988 -12.11762 -11.81815 -11.65007 -11.48448 -11.26971 -10.39450 -10.32753 -10.19808 -10.00401 -9.53181 -9.25272 -8.46900 -5.94959 0.86134 1.33660 1.37229 1.40272 1.41833 1.53612 1.97198 2.02620 2.05100 2.28412 2.85159 3.20386 3.27998 3.42201 3.50810 3.61206 3.68219 3.77949 3.96906 4.02308 4.13143 4.22738 4.29600 4.34215 4.43682 4.54862 4.56320 4.60628 4.68519 4.70974 4.84342 4.87335 4.89592 5.04386 5.06834 5.15131 5.15703 5.31941 5.41393 5.72719 5.84922 5.98077 6.03981 6.11071 6.34497 6.60803 6.75508 6.99967 7.13322 7.56481 8.12341 8.70299 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002155 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.032151 B =12991.369193 C =13794.193997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.135 0.865 4 C 0.505 3.495 5 O -0.569 6.569 6 N -0.699 5.699 7 C 0.140 3.860 8 H 0.077 0.923 9 C -0.136 4.136 10 C 0.042 3.958 11 N -0.528 5.528 12 C 0.054 3.946 13 C 0.437 3.563 14 O -0.617 6.617 15 N -0.572 5.572 16 C -0.330 4.330 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.990 3.010 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.061 3.939 25 N -0.366 5.366 26 C 0.062 3.938 27 C -0.284 4.284 28 C 0.038 3.962 29 N -0.342 5.342 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.417 0.583 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.397 0.603 41 H 0.277 0.723 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.198 0.802 45 H 0.171 0.829 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -11.270 20.515 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.153 0.847 4 C 0.290 3.710 5 O -0.447 6.447 6 N -0.352 5.352 7 C 0.033 3.967 8 H 0.095 0.905 9 C -0.175 4.175 10 C -0.085 4.085 11 N -0.254 5.254 12 C -0.077 4.077 13 C 0.225 3.775 14 O -0.503 6.503 15 N -0.210 5.210 16 C -0.460 4.460 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.814 3.186 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.068 4.068 25 N -0.148 5.148 26 C -0.083 4.083 27 C -0.313 4.313 28 C -0.148 4.148 29 N -0.163 5.163 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.215 0.785 45 H 0.188 0.812 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.846 -10.712 19.892 23.607 hybrid contribution -0.883 0.609 -0.205 1.092 sum -7.729 -10.103 19.687 23.439 Atomic orbital electron populations 1.22213 0.87102 1.05282 1.06482 1.21313 0.98535 0.97275 0.79295 0.84737 1.21218 0.79781 0.84516 0.85487 1.90747 1.38806 1.28089 1.87013 1.45707 1.53115 1.32186 1.04194 1.22028 0.98206 0.92962 0.83459 0.90524 1.23106 0.99482 0.99524 0.95417 1.22924 0.98761 0.92084 0.94723 1.63219 1.50031 1.05224 1.06879 1.22034 0.95678 0.92932 0.97028 1.20792 0.86981 0.87114 0.82636 1.90505 1.25959 1.78232 1.55600 1.41917 1.23456 1.16997 1.38581 1.19613 1.06929 0.95568 1.23873 0.90455 1.25987 0.96656 1.02673 0.95869 1.69662 1.18340 1.38970 1.28987 0.84971 0.77902 0.77260 0.78479 1.19907 1.19490 1.19856 1.22967 1.01651 0.94302 0.87854 1.48391 1.19368 1.25419 1.21630 1.22987 1.00568 0.90208 0.94576 1.21860 0.98758 1.06667 1.04022 1.24411 0.99936 0.93576 0.96860 1.77308 1.03782 1.26359 1.08820 0.88873 0.87091 0.90187 0.74539 0.89032 0.90006 0.89979 0.89856 0.87054 0.90602 0.76948 0.91322 0.91948 0.93166 0.78530 0.81191 0.77861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.72 71.98 0.63 -0.50 16 2 C 0.14 2.36 3.73 44.24 0.17 2.52 16 3 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.50 11.48 7.22 87.66 0.63 12.11 16 5 O -0.57 -18.55 16.06 -3.01 -0.05 -18.59 16 6 N -0.70 -13.64 5.09 -435.58 -2.22 -15.86 16 7 C 0.14 3.47 3.41 46.47 0.16 3.63 16 8 H 0.08 2.38 7.54 -2.38 -0.02 2.36 16 9 C -0.14 -2.63 6.67 31.87 0.21 -2.42 16 10 C 0.04 0.92 6.89 86.65 0.60 1.52 16 11 N -0.53 -16.33 5.07 -890.10 -4.51 -20.84 16 12 C 0.05 1.76 5.07 85.56 0.43 2.19 16 13 C 0.44 19.97 7.34 87.66 0.64 20.61 16 14 O -0.62 -33.10 13.89 -3.09 -0.04 -33.14 16 15 N -0.57 -28.27 5.29 -306.99 -1.62 -29.89 16 16 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 17 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 18 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 19 N -0.92 -48.29 13.05 21.66 0.28 -48.00 16 20 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.06 1.88 4.92 86.77 0.43 2.30 16 25 N -0.37 -7.94 3.02 -331.06 -1.00 -8.94 16 26 C 0.06 1.09 10.58 83.54 0.88 1.98 16 27 C -0.28 -4.98 10.80 21.99 0.24 -4.74 16 28 C 0.04 0.79 12.03 85.24 1.02 1.81 16 29 N -0.34 -9.03 12.58 -57.02 -0.72 -9.75 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.37 7.56 -2.39 -0.02 0.35 16 32 H 0.08 0.52 7.15 -2.39 -0.02 0.50 16 33 H 0.42 5.68 7.98 -92.71 -0.74 4.94 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.43 7.58 -2.39 -0.02 1.41 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 39 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 40 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 41 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 42 H 0.06 2.47 6.94 -2.38 -0.02 2.46 16 43 H 0.05 1.48 7.60 -2.39 -0.02 1.46 16 44 H 0.20 2.06 7.26 -2.91 -0.02 2.03 16 45 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -80.35 383.56 -0.98 -81.32 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.45 Total: 36.06 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 7.33 Total: 23.39 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -9.78 Total: -133.29 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -80.35 -0.98 -81.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316969605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.333 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds