Wall clock time and date at job start Tue Mar 31 2020 18:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21282 * 119.99544 * 119.99884 * 4 2 1 6 6 N 1.34774 * 120.00011 * 300.00244 * 4 2 1 7 7 C 1.46500 * 119.99881 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.28571 * 35.67683 * 7 6 4 9 9 C 1.54260 * 110.32406 * 273.54538 * 7 6 4 10 10 C 1.54373 * 105.06114 * 241.10447 * 9 7 6 11 11 N 1.48562 * 104.59654 * 23.85427 * 10 9 7 12 12 C 1.46898 * 111.00194 * 200.95876 * 11 10 9 13 13 C 1.50696 * 109.47454 * 290.12868 * 12 11 10 14 14 O 1.21298 * 119.99610 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00357 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00111 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00085 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00236 * 180.02562 * 16 15 13 19 19 N 1.31421 * 119.99680 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00456 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47164 * 89.99573 * 20 18 16 22 22 H 1.48493 * 109.47192 * 209.99714 * 20 18 16 23 23 H 1.48505 * 109.46725 * 329.99964 * 20 18 16 24 24 C 1.48561 * 104.22040 * 320.51648 * 11 10 9 25 25 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 26 26 C 1.34943 * 126.03704 * 324.72284 * 25 2 1 27 27 C 1.35311 * 107.74821 * 179.83811 * 26 25 2 28 28 C 1.39873 * 107.91981 * 0.41900 * 27 26 25 29 29 N 1.30845 * 108.20005 * 359.73752 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96998 * 120.00125 * 0.02562 * 6 4 2 34 34 H 1.09002 * 110.32081 * 0.02562 * 9 7 6 35 35 H 1.08997 * 110.32265 * 122.20591 * 9 7 6 36 36 H 1.09003 * 110.41252 * 142.63329 * 10 9 7 37 37 H 1.09001 * 110.41591 * 264.95907 * 10 9 7 38 38 H 1.09007 * 109.47125 * 50.12828 * 12 11 10 39 39 H 1.08996 * 109.47566 * 170.12212 * 12 11 10 40 40 H 0.96994 * 119.99387 * 359.97438 * 15 13 12 41 41 H 0.96999 * 119.99569 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.41349 * 280.70271 * 24 11 10 43 43 H 1.08996 * 110.41380 * 158.25850 * 24 11 10 44 44 H 1.08002 * 126.12302 * 359.97438 * 26 25 2 45 45 H 1.07999 * 126.04430 * 180.15896 * 27 26 25 46 46 H 1.07993 * 125.90148 * 179.72196 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6508 8 1 3.1988 -1.3287 3.4800 9 6 1.2360 -2.0862 4.0364 10 6 0.7286 -1.7262 5.4492 11 7 0.8911 -0.2524 5.5411 12 6 0.9301 0.1866 6.9424 13 6 -0.4347 0.0200 7.5593 14 8 -1.3500 -0.4206 6.8965 15 7 -0.6385 0.3616 8.8470 16 6 -1.8802 0.2105 9.4080 17 1 -2.6953 -0.1818 8.8180 18 6 -2.0905 0.5632 10.7354 19 7 -1.0989 1.0411 11.4533 20 14 -3.7826 0.3580 11.4997 21 1 -3.8936 -0.9953 12.1006 22 1 -3.9774 1.3853 12.5541 23 1 -4.8221 0.5209 10.4516 24 6 2.1857 0.0150 4.8631 25 7 2.0184 -0.6906 -1.1961 26 6 1.4432 -1.7592 -1.7864 27 6 2.1964 -2.0925 -2.8599 28 6 3.2739 -1.2029 -2.9226 29 7 3.1682 -0.3620 -1.9257 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.1487 0.5385 2.5436 34 1 0.4028 -2.1347 3.3353 35 1 1.7701 -3.0362 4.0566 36 1 -0.3208 -2.0005 5.5576 37 1 1.3314 -2.2249 6.2082 38 1 1.6533 -0.4161 7.4920 39 1 1.2233 1.2355 6.9866 40 1 0.0935 0.7143 9.3768 41 1 -1.2458 1.2876 12.3799 42 1 3.0178 -0.2095 5.5304 43 1 2.2334 1.0518 4.5302 44 1 0.5418 -2.2575 -1.4614 45 1 2.0024 -2.9047 -3.5448 46 1 4.0579 -1.2091 -3.6653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316969607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:37 Heat of formation + Delta-G solvation = 26.084228 kcal Electronic energy + Delta-G solvation = -28366.316333 eV Core-core repulsion = 24293.286447 eV Total energy + Delta-G solvation = -4073.029886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54384 -40.18622 -38.89817 -37.56190 -34.94603 -34.50041 -33.82444 -31.46279 -30.99277 -30.27866 -29.72584 -28.47888 -26.66239 -25.16570 -24.22681 -22.20319 -21.33868 -21.24432 -20.63760 -20.12504 -19.23604 -18.03722 -17.84709 -17.48038 -16.42165 -16.04221 -15.63766 -15.51129 -15.01589 -14.67733 -14.61489 -14.50150 -14.11586 -13.83098 -13.80474 -13.75689 -13.24515 -13.12561 -12.92607 -12.76672 -12.50996 -12.31620 -12.05512 -12.02545 -11.81296 -11.55616 -11.52860 -11.15166 -10.96788 -10.90127 -10.78126 -10.42374 -10.31109 -10.25488 -9.57793 -9.53368 -9.34282 -8.78809 -8.57726 -8.11727 -7.99182 -6.45342 -3.86289 1.62161 2.08373 2.25436 2.69255 2.94221 3.14755 3.23794 3.29256 3.85604 3.96045 4.04565 4.21549 4.25582 4.38976 4.45658 4.60018 4.70206 4.74569 4.98997 5.02974 5.10800 5.14645 5.22612 5.27474 5.32876 5.36276 5.46328 5.58831 5.60142 5.63134 5.71374 5.74691 5.81924 5.89316 6.07162 6.21619 6.28701 6.37116 6.43665 6.71758 6.99070 7.08308 7.21778 7.49957 7.51575 7.88160 8.02095 8.57636 9.14389 9.50373 10.01939 10.72348 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.001893 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.619057 B =14788.034301 C =15120.044975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.128 0.872 4 C 0.501 3.499 5 O -0.524 6.524 6 N -0.709 5.709 7 C 0.145 3.855 8 H 0.094 0.906 9 C -0.132 4.132 10 C 0.037 3.963 11 N -0.484 5.484 12 C 0.034 3.966 13 C 0.444 3.556 14 O -0.579 6.579 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.021 3.979 25 N -0.355 5.355 26 C 0.070 3.930 27 C -0.276 4.276 28 C 0.046 3.954 29 N -0.293 5.293 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.147 0.853 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 -1.608 -21.992 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.146 0.854 4 C 0.285 3.715 5 O -0.399 6.399 6 N -0.362 5.362 7 C 0.040 3.960 8 H 0.112 0.888 9 C -0.171 4.171 10 C -0.091 4.091 11 N -0.208 5.208 12 C -0.098 4.098 13 C 0.230 3.770 14 O -0.463 6.463 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.108 4.108 25 N -0.137 5.137 26 C -0.076 4.076 27 C -0.305 4.305 28 C -0.140 4.140 29 N -0.113 5.113 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.187 0.813 45 H 0.164 0.836 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.526 -1.183 -21.833 23.124 hybrid contribution -0.229 -0.626 1.048 1.242 sum 7.297 -1.809 -20.785 22.103 Atomic orbital electron populations 1.22184 0.90238 1.04570 1.05058 1.21104 0.96306 0.97686 0.81243 0.85421 1.20706 0.80873 0.85197 0.84764 1.90766 1.36979 1.25689 1.86434 1.46022 1.53255 1.32200 1.04715 1.21709 0.98307 0.92481 0.83504 0.88835 1.22767 0.99083 0.97709 0.97523 1.23189 1.03419 0.87683 0.94812 1.65189 1.27982 1.13937 1.13676 1.22066 0.97377 1.01558 0.88801 1.19662 0.89412 0.84932 0.83029 1.90503 1.44204 1.49900 1.61648 1.41858 1.12235 1.56676 1.09328 1.19685 0.88282 1.40266 0.94602 0.87927 1.25264 0.99366 0.96968 0.96364 1.69615 1.31662 1.43534 1.09484 0.85857 0.81781 0.77932 0.78717 1.20435 1.20916 1.19419 1.23449 0.92568 0.99960 0.94828 1.48190 1.19725 1.24345 1.21408 1.22425 0.99888 0.90558 0.94741 1.21464 0.99412 1.06368 1.03297 1.23864 0.99077 0.94041 0.97037 1.77348 1.01996 1.24566 1.07438 0.90778 0.90058 0.88807 0.75789 0.90592 0.90910 0.88025 0.94161 0.93086 0.89216 0.77513 0.91865 0.92388 0.89405 0.81304 0.83551 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.74 37.16 0.32 -0.60 16 2 C 0.14 1.22 3.73 -69.08 -0.26 0.96 16 3 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.50 5.50 7.22 -10.98 -0.08 5.43 16 5 O -0.52 -8.01 16.11 5.56 0.09 -7.92 16 6 N -0.71 -6.73 4.89 -52.46 -0.26 -6.99 16 7 C 0.15 1.59 3.36 -66.55 -0.22 1.37 16 8 H 0.09 1.09 7.64 -51.93 -0.40 0.70 16 9 C -0.13 -1.61 6.78 -25.35 -0.17 -1.78 16 10 C 0.04 0.55 5.80 -2.18 -0.01 0.54 16 11 N -0.48 -7.22 5.06 -231.41 -1.17 -8.39 16 12 C 0.03 0.56 5.30 -4.98 -0.03 0.54 16 13 C 0.44 10.05 7.58 -10.99 -0.08 9.97 16 14 O -0.58 -14.97 14.42 5.54 0.08 -14.89 16 15 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 16 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 17 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 20 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.02 0.23 6.10 -2.18 -0.01 0.22 16 25 N -0.35 -3.86 3.02 -55.99 -0.17 -4.03 16 26 C 0.07 0.67 10.57 -17.23 -0.18 0.49 16 27 C -0.28 -2.57 10.80 -40.01 -0.43 -3.00 16 28 C 0.05 0.47 12.03 -17.36 -0.21 0.26 16 29 N -0.29 -3.64 12.58 30.63 0.39 -3.26 16 30 H 0.07 0.44 7.16 -51.93 -0.37 0.07 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.43 7.56 -51.93 -0.39 0.04 16 33 H 0.41 3.08 7.97 -40.82 -0.33 2.75 16 34 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 37 H 0.04 0.59 7.83 -51.93 -0.41 0.18 16 38 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 39 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 40 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 42 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 43 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16 44 H 0.17 1.18 7.27 -52.49 -0.38 0.80 16 45 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -35.28 384.66 -7.87 -43.14 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -6.65 Total: 11.64 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.61 Total: 6.57 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.55 Total: -60.00 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.28 -7.87 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316969607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.227 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds