Wall clock time and date at job start Tue Mar 31 2020 18:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 O 1.21277 * 120.00304 * 120.00026 * 4 2 1 6 6 N 1.34778 * 119.99637 * 299.99654 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09005 * 110.27097 * 327.08982 * 7 6 4 9 9 C 1.54592 * 110.30679 * 89.28257 * 7 6 4 10 10 C 1.54939 * 102.92104 * 96.96146 * 9 7 6 11 11 N 1.48532 * 103.22649 * 37.41320 * 10 9 7 12 12 C 1.46901 * 110.99970 * 200.27866 * 11 10 9 13 13 C 1.50697 * 109.47169 * 307.39724 * 12 11 10 14 14 O 1.21284 * 119.99914 * 359.97438 * 13 12 11 15 15 N 1.34786 * 119.99720 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99762 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99695 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00264 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00352 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47296 * 59.99790 * 20 18 16 22 22 H 1.48498 * 109.47371 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47217 * 300.00092 * 20 18 16 24 24 C 1.47900 * 105.81978 * 320.79301 * 11 10 9 25 25 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 26 26 C 1.34952 * 126.03514 * 324.99936 * 25 2 1 27 27 C 1.35319 * 107.74422 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.91996 * 0.02562 * 27 26 25 29 29 N 1.30841 * 108.20046 * 359.73790 * 28 27 26 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96994 * 120.00473 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.72627 * 215.31605 * 9 7 6 35 35 H 1.08997 * 110.72951 * 338.60258 * 9 7 6 36 36 H 1.09001 * 110.66992 * 278.97973 * 10 9 7 37 37 H 1.09004 * 110.81142 * 155.91501 * 10 9 7 38 38 H 1.09007 * 109.47068 * 67.39865 * 12 11 10 39 39 H 1.09004 * 109.47291 * 187.39321 * 12 11 10 40 40 H 0.96997 * 119.99962 * 0.02562 * 15 13 12 41 41 H 0.96992 * 120.00332 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.91748 * 265.97782 * 24 11 10 43 43 H 1.09001 * 109.91824 * 144.68435 * 24 11 10 44 44 H 1.07996 * 126.12920 * 0.02562 * 26 25 2 45 45 H 1.07996 * 126.03943 * 179.97438 * 27 26 25 46 46 H 1.08000 * 125.89451 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6507 8 1 2.2730 -2.0113 3.4635 9 6 3.5666 -0.3677 4.0780 10 6 3.1874 0.6535 5.1798 11 7 2.0680 -0.0146 5.8916 12 6 1.2653 0.9600 6.6425 13 6 2.1688 1.7797 7.5272 14 8 3.3637 1.5721 7.5322 15 7 1.6488 2.7436 8.3130 16 6 2.4707 3.4889 9.1183 17 1 3.5348 3.3040 9.1227 18 6 1.9349 4.4829 9.9279 19 7 0.6402 4.7082 9.9221 20 14 3.0548 5.4989 11.0246 21 1 4.0499 6.2159 10.1874 22 1 2.2434 6.4846 11.7831 23 1 3.7613 4.6037 11.9757 24 6 1.2586 -0.6723 4.8429 25 7 2.0184 -0.6906 -1.1962 26 6 1.4402 -1.7559 -1.7895 27 6 2.1961 -2.0923 -2.8603 28 6 3.2734 -1.2024 -2.9231 29 7 3.1650 -0.3585 -1.9292 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1489 0.5384 2.5436 34 1 4.2035 -1.1539 4.4835 35 1 4.0541 0.1315 3.2407 36 1 2.8556 1.5923 4.7364 37 1 4.0258 0.8237 5.8552 38 1 0.7459 1.6173 5.9449 39 1 0.5354 0.4331 7.2571 40 1 0.6931 2.9093 8.3092 41 1 0.2661 5.4017 10.4875 42 1 0.4449 -0.0154 4.5354 43 1 0.8576 -1.6135 5.2190 44 1 0.5357 -2.2508 -1.4679 45 1 2.0023 -2.9048 -3.5448 46 1 4.0571 -1.2084 -3.6663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316969609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:41 Heat of formation + Delta-G solvation = 30.480936 kcal Electronic energy + Delta-G solvation = -28445.250101 eV Core-core repulsion = 24372.410871 eV Total energy + Delta-G solvation = -4072.839230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58860 -40.26404 -38.99796 -37.53709 -35.01954 -34.53519 -33.83380 -31.50236 -30.98056 -30.30909 -29.73553 -28.49797 -26.64181 -25.24067 -24.21390 -22.28678 -21.36339 -21.26800 -20.64206 -20.12611 -19.28219 -18.04100 -17.91250 -17.47685 -16.64053 -15.90464 -15.74354 -15.27397 -15.17643 -14.73900 -14.56233 -14.42808 -14.29160 -13.94201 -13.86103 -13.59778 -13.38530 -13.19302 -13.01157 -12.81665 -12.61338 -12.22347 -12.19175 -11.96965 -11.80959 -11.59191 -11.31305 -11.14749 -10.92279 -10.91693 -10.83378 -10.47314 -10.35498 -10.26986 -9.61679 -9.55176 -9.34901 -8.82724 -8.46737 -8.09037 -7.97267 -6.47689 -3.88698 1.58117 2.03528 2.19065 2.66496 2.85375 3.16016 3.22459 3.26690 3.81963 3.94294 4.03293 4.15538 4.26341 4.33430 4.47967 4.53390 4.69088 4.71756 4.87672 4.97559 5.01627 5.08827 5.19163 5.26572 5.35424 5.36781 5.47432 5.54729 5.57669 5.65654 5.78221 5.81382 5.86694 5.96043 6.12232 6.20251 6.30518 6.40575 6.62242 6.67609 7.07062 7.12378 7.20031 7.47079 7.49688 7.80820 7.99396 8.54823 9.11756 9.46717 9.98257 10.69768 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.001939 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.197017 B =14438.569503 C =14518.490399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.129 0.871 4 C 0.502 3.498 5 O -0.518 6.518 6 N -0.717 5.717 7 C 0.134 3.866 8 H 0.099 0.901 9 C -0.134 4.134 10 C 0.038 3.962 11 N -0.493 5.493 12 C 0.037 3.963 13 C 0.440 3.560 14 O -0.580 6.580 15 N -0.560 5.560 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.029 3.971 25 N -0.355 5.355 26 C 0.067 3.933 27 C -0.275 4.275 28 C 0.047 3.953 29 N -0.291 5.291 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.121 0.879 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.273 0.727 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.169 0.831 45 H 0.147 0.853 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 -9.955 -22.029 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.146 0.854 4 C 0.285 3.715 5 O -0.392 6.392 6 N -0.370 5.370 7 C 0.029 3.971 8 H 0.117 0.883 9 C -0.173 4.173 10 C -0.089 4.089 11 N -0.218 5.218 12 C -0.095 4.095 13 C 0.226 3.774 14 O -0.465 6.465 15 N -0.196 5.196 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.100 4.100 25 N -0.138 5.138 26 C -0.078 4.078 27 C -0.304 4.304 28 C -0.140 4.140 29 N -0.111 5.111 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.236 -9.966 -20.880 23.521 hybrid contribution -1.188 0.941 -0.269 1.540 sum -5.424 -9.025 -21.149 23.625 Atomic orbital electron populations 1.22167 0.90445 1.04400 1.04895 1.21101 0.96164 0.97846 0.81354 0.85355 1.20691 0.80940 0.85164 0.84668 1.90778 1.36430 1.25689 1.86339 1.46167 1.53585 1.31984 1.05230 1.21903 0.94213 0.97907 0.83037 0.88310 1.22981 0.96012 0.99790 0.98553 1.23520 0.96792 0.93830 0.94742 1.64665 1.08119 1.27825 1.21174 1.22112 0.96053 0.93981 0.97322 1.19679 0.88961 0.83758 0.85044 1.90445 1.15721 1.70622 1.69674 1.41840 1.10306 1.30552 1.36938 1.19655 0.92878 1.12558 1.17905 0.87905 1.25271 0.96301 0.97945 0.98360 1.69598 1.10836 1.33397 1.40380 0.85907 0.79377 0.79162 0.79729 1.19894 1.20953 1.19838 1.23232 0.95130 1.00765 0.90837 1.48167 1.19896 1.24460 1.21231 1.22405 0.99840 0.90772 0.94805 1.21470 0.99224 1.06336 1.03367 1.23888 0.99081 0.93901 0.97093 1.77383 1.02089 1.24320 1.07309 0.89190 0.89978 0.90780 0.76530 0.89864 0.91096 0.94708 0.86133 0.93429 0.89099 0.77462 0.91763 0.93267 0.89212 0.81346 0.83515 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 8.73 37.16 0.32 -0.39 16 2 C 0.14 1.17 3.73 -69.08 -0.26 0.91 16 3 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 4 C 0.50 5.41 7.22 -10.99 -0.08 5.33 16 5 O -0.52 -7.94 16.07 5.56 0.09 -7.85 16 6 N -0.72 -6.53 4.95 -52.49 -0.26 -6.79 16 7 C 0.13 1.52 3.34 -66.57 -0.22 1.29 16 8 H 0.10 1.20 7.56 -51.93 -0.39 0.81 16 9 C -0.13 -1.81 6.78 -24.87 -0.17 -1.98 16 10 C 0.04 0.62 5.31 -1.90 -0.01 0.61 16 11 N -0.49 -7.73 5.26 -231.89 -1.22 -8.95 16 12 C 0.04 0.62 5.52 -4.98 -0.03 0.59 16 13 C 0.44 9.95 7.49 -10.98 -0.08 9.87 16 14 O -0.58 -14.93 13.09 5.55 0.07 -14.86 16 15 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 16 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 17 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 20 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 24 C 0.03 0.33 6.47 -2.76 -0.02 0.31 16 25 N -0.36 -3.79 3.02 -55.99 -0.17 -3.96 16 26 C 0.07 0.61 10.58 -17.22 -0.18 0.43 16 27 C -0.27 -2.48 10.80 -40.01 -0.43 -2.91 16 28 C 0.05 0.48 12.03 -17.36 -0.21 0.27 16 29 N -0.29 -3.66 12.58 30.63 0.39 -3.28 16 30 H 0.09 0.24 7.56 -51.93 -0.39 -0.15 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 7.15 -51.93 -0.37 -0.06 16 33 H 0.40 2.64 7.75 -40.82 -0.32 2.32 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.96 8.05 -51.93 -0.42 0.55 16 36 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 37 H 0.12 2.40 5.96 -51.93 -0.31 2.09 16 38 H 0.05 0.70 7.81 -51.92 -0.41 0.29 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.05 0.47 7.05 -51.93 -0.37 0.10 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.17 1.02 7.26 -52.49 -0.38 0.64 16 45 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -35.25 381.73 -7.87 -43.12 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.56 Total: 11.59 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.61 Total: 6.53 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.60 Total: -59.96 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.16 Total: -22.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.25 -7.87 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316969609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.600 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds