Wall clock time and date at job start Tue Mar 31 2020 18:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 O 1.21277 * 120.00304 * 120.00026 * 4 2 1 6 6 N 1.34778 * 119.99637 * 299.99654 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09005 * 110.27097 * 327.08982 * 7 6 4 9 9 C 1.54592 * 110.30679 * 89.28257 * 7 6 4 10 10 C 1.54939 * 102.92104 * 96.96146 * 9 7 6 11 11 N 1.48532 * 103.22649 * 37.41320 * 10 9 7 12 12 C 1.46901 * 110.99970 * 200.27866 * 11 10 9 13 13 C 1.50697 * 109.47169 * 307.39724 * 12 11 10 14 14 O 1.21284 * 119.99914 * 359.97438 * 13 12 11 15 15 N 1.34786 * 119.99720 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99762 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99695 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00264 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00352 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47296 * 59.99790 * 20 18 16 22 22 H 1.48498 * 109.47371 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47217 * 300.00092 * 20 18 16 24 24 C 1.47900 * 105.81978 * 320.79301 * 11 10 9 25 25 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 26 26 C 1.34952 * 126.03514 * 324.99936 * 25 2 1 27 27 C 1.35319 * 107.74422 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.91996 * 0.02562 * 27 26 25 29 29 N 1.30841 * 108.20046 * 359.73790 * 28 27 26 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96994 * 120.00473 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.72627 * 215.31605 * 9 7 6 35 35 H 1.08997 * 110.72951 * 338.60258 * 9 7 6 36 36 H 1.09001 * 110.66992 * 278.97973 * 10 9 7 37 37 H 1.09004 * 110.81142 * 155.91501 * 10 9 7 38 38 H 1.09007 * 109.47068 * 67.39865 * 12 11 10 39 39 H 1.09004 * 109.47291 * 187.39321 * 12 11 10 40 40 H 0.96997 * 119.99962 * 0.02562 * 15 13 12 41 41 H 0.96992 * 120.00332 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.91748 * 265.97782 * 24 11 10 43 43 H 1.09001 * 109.91824 * 144.68435 * 24 11 10 44 44 H 1.07996 * 126.12920 * 0.02562 * 26 25 2 45 45 H 1.07996 * 126.03943 * 179.97438 * 27 26 25 46 46 H 1.08000 * 125.89451 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6507 8 1 2.2730 -2.0113 3.4635 9 6 3.5666 -0.3677 4.0780 10 6 3.1874 0.6535 5.1798 11 7 2.0680 -0.0146 5.8916 12 6 1.2653 0.9600 6.6425 13 6 2.1688 1.7797 7.5272 14 8 3.3637 1.5721 7.5322 15 7 1.6488 2.7436 8.3130 16 6 2.4707 3.4889 9.1183 17 1 3.5348 3.3040 9.1227 18 6 1.9349 4.4829 9.9279 19 7 0.6402 4.7082 9.9221 20 14 3.0548 5.4989 11.0246 21 1 4.0499 6.2159 10.1874 22 1 2.2434 6.4846 11.7831 23 1 3.7613 4.6037 11.9757 24 6 1.2586 -0.6723 4.8429 25 7 2.0184 -0.6906 -1.1962 26 6 1.4402 -1.7559 -1.7895 27 6 2.1961 -2.0923 -2.8603 28 6 3.2734 -1.2024 -2.9231 29 7 3.1650 -0.3585 -1.9292 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1489 0.5384 2.5436 34 1 4.2035 -1.1539 4.4835 35 1 4.0541 0.1315 3.2407 36 1 2.8556 1.5923 4.7364 37 1 4.0258 0.8237 5.8552 38 1 0.7459 1.6173 5.9449 39 1 0.5354 0.4331 7.2571 40 1 0.6931 2.9093 8.3092 41 1 0.2661 5.4017 10.4875 42 1 0.4449 -0.0154 4.5354 43 1 0.8576 -1.6135 5.2190 44 1 0.5357 -2.2508 -1.4679 45 1 2.0023 -2.9048 -3.5448 46 1 4.0571 -1.2084 -3.6663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316969609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:40 Heat of formation + Delta-G solvation = 2.337936 kcal Electronic energy + Delta-G solvation = -28446.470473 eV Core-core repulsion = 24372.410871 eV Total energy + Delta-G solvation = -4074.059602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.29852 -41.24322 -40.37627 -38.97402 -36.07637 -35.72382 -35.23036 -33.33793 -32.24328 -31.03123 -30.41786 -29.52622 -28.10910 -26.15891 -25.65498 -23.15269 -22.50995 -21.98767 -21.63330 -21.04026 -20.85212 -19.85375 -18.78970 -18.23629 -17.82986 -17.29595 -16.81295 -16.53064 -16.23574 -16.15340 -15.82727 -15.70336 -15.32717 -15.11055 -14.75190 -14.68899 -14.44538 -14.17081 -13.78499 -13.62710 -13.47082 -13.43098 -13.32016 -13.18035 -12.94711 -12.87257 -12.60777 -12.47811 -12.42077 -12.29521 -12.12301 -11.95622 -11.64692 -11.46661 -11.23152 -10.37810 -10.33625 -10.12213 -9.99926 -9.52732 -9.32632 -8.46975 -5.95017 0.87314 1.36201 1.38869 1.41545 1.42410 1.51670 1.97550 2.04752 2.08381 2.28656 2.86958 3.20329 3.28495 3.39583 3.51221 3.61746 3.76491 3.79357 3.97776 4.04576 4.13856 4.25447 4.30538 4.35615 4.48446 4.55289 4.58497 4.62142 4.68752 4.71891 4.79505 4.87808 4.91829 5.03078 5.08020 5.15626 5.24246 5.35073 5.41747 5.73178 5.83184 5.93245 6.04981 6.10206 6.36817 6.61027 6.75894 7.03208 7.13341 7.56174 8.12638 8.69977 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.001939 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.197017 B =14438.569503 C =14518.490399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.135 0.865 4 C 0.504 3.496 5 O -0.568 6.568 6 N -0.701 5.701 7 C 0.145 3.855 8 H 0.094 0.906 9 C -0.127 4.127 10 C 0.045 3.955 11 N -0.513 5.513 12 C 0.049 3.951 13 C 0.436 3.564 14 O -0.616 6.616 15 N -0.571 5.571 16 C -0.332 4.332 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.918 5.918 20 Si 0.990 3.010 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.036 3.964 25 N -0.365 5.365 26 C 0.062 3.938 27 C -0.285 4.285 28 C 0.038 3.962 29 N -0.341 5.341 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.198 0.802 45 H 0.169 0.831 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 -10.142 -22.947 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.152 0.848 4 C 0.289 3.711 5 O -0.446 6.446 6 N -0.355 5.355 7 C 0.039 3.961 8 H 0.112 0.888 9 C -0.166 4.166 10 C -0.083 4.083 11 N -0.238 5.238 12 C -0.082 4.082 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.208 5.208 16 C -0.462 4.462 17 H 0.096 0.904 18 C -0.212 4.212 19 N -0.559 5.559 20 Si 0.814 3.186 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.092 4.092 25 N -0.148 5.148 26 C -0.083 4.083 27 C -0.314 4.314 28 C -0.148 4.148 29 N -0.162 5.162 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.215 0.785 45 H 0.187 0.813 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.715 -10.131 -21.807 24.965 hybrid contribution -0.388 0.931 -0.028 1.009 sum -7.104 -9.200 -21.834 24.735 Atomic orbital electron populations 1.22218 0.87170 1.05257 1.06494 1.21341 0.98510 0.97293 0.79405 0.84766 1.21181 0.79872 0.84439 0.85577 1.90758 1.38707 1.28064 1.87051 1.45995 1.53137 1.32131 1.04223 1.21666 0.92856 0.97632 0.83921 0.88807 1.22861 0.97451 0.98842 0.97483 1.23228 0.95885 0.94692 0.94456 1.64609 1.08805 1.27458 1.22976 1.22023 0.94911 0.94065 0.97207 1.20807 0.89335 0.83039 0.84434 1.90455 1.17896 1.71380 1.70554 1.41898 1.10241 1.31244 1.37462 1.19590 0.92349 1.14344 1.19911 0.90440 1.25984 0.97718 0.98387 0.99061 1.69650 1.11702 1.33763 1.40789 0.85032 0.77802 0.77795 0.77987 1.19814 1.19476 1.19920 1.23271 0.95002 1.01594 0.89317 1.48402 1.19592 1.25113 1.21670 1.22982 1.00575 0.90239 0.94537 1.21859 0.98848 1.06760 1.03939 1.24398 0.99888 0.93594 0.96942 1.77298 1.03857 1.26199 1.08833 0.86859 0.89080 0.90268 0.74627 0.90827 0.91513 0.94713 0.90626 0.90420 0.86853 0.76907 0.91301 0.90218 0.87599 0.78546 0.81304 0.77946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.73 71.98 0.63 -0.23 16 2 C 0.14 2.05 3.73 44.25 0.17 2.22 16 3 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.50 10.10 7.22 87.66 0.63 10.73 16 5 O -0.57 -17.15 16.07 -3.02 -0.05 -17.20 16 6 N -0.70 -11.05 4.95 -438.37 -2.17 -13.22 16 7 C 0.14 3.00 3.34 45.87 0.15 3.15 16 8 H 0.09 2.14 7.56 -2.38 -0.02 2.12 16 9 C -0.13 -3.42 6.78 31.80 0.22 -3.20 16 10 C 0.04 1.46 5.31 86.65 0.46 1.91 16 11 N -0.51 -15.25 5.26 -887.56 -4.67 -19.92 16 12 C 0.05 1.53 5.52 85.56 0.47 2.01 16 13 C 0.44 19.80 7.49 87.65 0.66 20.46 16 14 O -0.62 -32.81 13.09 -3.04 -0.04 -32.85 16 15 N -0.57 -28.19 5.29 -306.98 -1.62 -29.82 16 16 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 17 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 19 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 20 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.04 0.69 6.47 86.45 0.56 1.25 16 25 N -0.37 -7.42 3.02 -331.05 -1.00 -8.41 16 26 C 0.06 1.03 10.58 83.54 0.88 1.92 16 27 C -0.29 -4.77 10.80 21.99 0.24 -4.53 16 28 C 0.04 0.75 12.03 85.24 1.03 1.77 16 29 N -0.34 -8.57 12.58 -57.02 -0.72 -9.29 16 30 H 0.11 0.11 7.56 -2.39 -0.02 0.09 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.40 7.15 -2.39 -0.02 0.38 16 33 H 0.42 3.97 7.75 -92.71 -0.72 3.25 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.07 1.83 8.05 -2.39 -0.02 1.82 16 36 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 37 H 0.08 3.17 5.96 -2.38 -0.01 3.15 16 38 H 0.08 2.00 7.81 -2.38 -0.02 1.98 16 39 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 41 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.08 1.10 7.05 -2.39 -0.02 1.09 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.20 1.87 7.26 -2.91 -0.02 1.85 16 45 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -80.00 381.73 -1.01 -81.01 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.43 Total: 33.63 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 7.37 Total: 19.69 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -9.90 Total: -128.66 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.09 Total: -50.05 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -80.00 -1.01 -81.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316969609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.349 kcal (2) G-P(sol) polarization free energy of solvation -79.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds