Wall clock time and date at job start Tue Mar 31 2020 18:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47499 * 2 1 4 4 C 1.52996 * 109.47104 * 239.99894 * 2 1 3 5 5 N 1.46498 * 109.47367 * 65.40249 * 4 2 1 6 6 C 1.34774 * 120.00277 * 175.28379 * 5 4 2 7 7 O 1.21370 * 119.99947 * 359.97438 * 6 5 4 8 8 C 1.49304 * 120.00293 * 179.97438 * 6 5 4 9 9 O 1.21410 * 119.99835 * 359.97438 * 8 6 5 10 10 N 1.34780 * 120.00364 * 180.27158 * 8 6 5 11 11 C 1.40297 * 119.99975 * 179.72300 * 10 8 6 12 12 C 1.40716 * 126.10061 * 359.69505 * 11 10 8 13 13 N 1.30880 * 108.37488 * 179.81307 * 12 11 10 14 14 N 1.40063 * 108.43156 * 0.44159 * 13 12 11 15 15 C 1.37299 * 126.05094 * 179.71449 * 14 13 12 16 16 H 1.07998 * 119.99501 * 174.74885 * 15 14 13 17 17 C 1.39010 * 120.00161 * 354.75075 * 15 14 13 18 18 N 1.31288 * 119.99760 * 5.26899 * 17 15 14 19 19 Si 1.86800 * 119.99954 * 185.26724 * 17 15 14 20 20 H 1.48492 * 109.47313 * 94.99453 * 19 17 15 21 21 H 1.48507 * 109.46968 * 214.99588 * 19 17 15 22 22 H 1.48500 * 109.46973 * 334.99474 * 19 17 15 23 23 C 1.35789 * 126.09622 * 179.97438 * 11 10 8 24 24 N 1.46902 * 109.47058 * 119.99673 * 2 1 3 25 25 C 1.48528 * 111.00056 * 179.29319 * 24 2 1 26 26 C 1.54935 * 103.22423 * 159.72444 * 25 24 2 27 27 C 1.54589 * 102.92535 * 322.58375 * 26 25 24 28 28 C 1.47898 * 111.00228 * 296.69351 * 24 2 1 29 29 H 1.08999 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47342 * 300.00672 * 1 2 3 31 31 H 1.09005 * 109.47048 * 60.00152 * 1 2 3 32 32 H 1.08998 * 109.47325 * 305.39885 * 4 2 1 33 33 H 1.09005 * 109.46926 * 185.39775 * 4 2 1 34 34 H 0.96997 * 119.99885 * 355.27920 * 5 4 2 35 35 H 0.96997 * 119.99711 * 359.72598 * 10 8 6 36 36 H 1.08004 * 125.81107 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99467 * 180.02562 * 18 17 15 38 38 H 1.08000 * 126.25114 * 359.97438 * 23 11 10 39 39 H 1.09004 * 110.66898 * 278.15770 * 25 24 2 40 40 H 1.08996 * 110.66684 * 41.28869 * 25 24 2 41 41 H 1.09004 * 110.72289 * 204.22320 * 26 25 24 42 42 H 1.09002 * 110.72847 * 80.94700 * 26 25 24 43 43 H 1.08994 * 110.31197 * 263.04683 * 27 26 25 44 44 H 1.08997 * 110.31256 * 140.87138 * 27 26 25 45 45 H 1.08999 * 109.91545 * 333.50925 * 28 24 2 46 46 H 1.09003 * 109.91886 * 94.79828 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6607 0.0403 -2.4419 6 6 2.0862 -0.3557 -3.6578 7 8 2.7841 -1.3430 -3.7647 8 6 1.6993 0.4201 -4.8734 9 8 1.0009 1.4074 -4.7665 10 7 2.1203 0.0210 -6.0899 11 6 1.7518 0.7467 -7.2327 12 6 0.9466 1.9004 -7.2583 13 7 0.8284 2.2935 -8.5010 14 7 1.5413 1.4053 -9.3162 15 6 1.6541 1.4759 -10.6827 16 1 2.2991 0.7868 -11.2075 17 6 0.9380 2.4342 -11.3907 18 7 0.2354 3.3371 -10.7467 19 14 0.9756 2.4373 -13.2583 20 1 -0.1970 1.6891 -13.7783 21 1 0.9283 3.8371 -13.7520 22 1 2.2254 1.7883 -13.7293 23 6 2.1042 0.4579 -8.5119 24 7 2.0196 -0.6924 1.1995 25 6 3.5043 -0.7271 1.2253 26 6 3.8269 -0.9833 2.7189 27 6 2.7471 -0.1556 3.4528 28 6 1.6115 0.0227 2.4281 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.5998 -1.7172 -1.2989 33 1 3.1257 -0.8057 -1.2021 34 1 1.1033 0.8295 -2.3564 35 1 2.6780 -0.7680 -6.1753 36 1 0.5039 2.3813 -6.3984 37 1 -0.2646 4.0055 -11.2408 38 1 2.7182 -0.3702 -8.8337 39 1 3.8810 -1.5406 0.6053 40 1 3.9171 0.2281 0.9009 41 1 4.8248 -0.6208 2.9656 42 1 3.7301 -2.0423 2.9583 43 1 3.1482 0.8147 3.7456 44 1 2.3858 -0.6960 4.3277 45 1 1.4695 1.0815 2.2116 46 1 0.6885 -0.4063 2.8182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319349353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:45 Heat of formation + Delta-G solvation = 22.693937 kcal Electronic energy + Delta-G solvation = -27907.603652 eV Core-core repulsion = 23834.426752 eV Total energy + Delta-G solvation = -4073.176900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57551 -39.80076 -39.30689 -37.92380 -35.95865 -34.40754 -33.30261 -32.93133 -30.33659 -29.70293 -29.22941 -28.11521 -26.97390 -25.20940 -23.73567 -22.44326 -21.18047 -21.00318 -20.66691 -20.22187 -19.47679 -18.24503 -17.48097 -16.93899 -16.26435 -15.95881 -15.85351 -15.54159 -15.21470 -15.00413 -14.90792 -14.31600 -14.06618 -13.88828 -13.60506 -13.34579 -13.28467 -13.20010 -12.99608 -12.81238 -12.58703 -11.90139 -11.76846 -11.75439 -11.58733 -11.50120 -11.43606 -11.32032 -11.23167 -11.21926 -10.97010 -10.87074 -10.55417 -10.29701 -9.31260 -9.24176 -9.15369 -8.88599 -8.86433 -8.13767 -6.78988 -6.61829 -4.28834 1.64280 2.51608 2.92621 3.03349 3.08548 3.31882 3.50328 3.70678 3.77408 4.01559 4.17925 4.22499 4.35953 4.44328 4.55686 4.61285 4.64361 4.87019 4.88381 4.96502 5.01123 5.08978 5.21095 5.36104 5.40565 5.42286 5.42799 5.47492 5.56560 5.62060 5.68513 5.77489 5.91319 6.11544 6.19281 6.35230 6.43970 6.61037 6.74414 6.88306 6.90153 7.15275 7.18618 7.74763 7.84253 8.08757 8.17405 8.47377 8.68363 9.30412 9.58789 10.34217 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040910 B = 0.001756 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.273106 B =15941.855284 C =16333.944916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 H 0.052 0.948 4 C 0.125 3.875 5 N -0.704 5.704 6 C 0.516 3.484 7 O -0.527 6.527 8 C 0.484 3.516 9 O -0.524 6.524 10 N -0.583 5.583 11 C -0.070 4.070 12 C -0.026 4.026 13 N -0.261 5.261 14 N -0.138 5.138 15 C -0.323 4.323 16 H 0.118 0.882 17 C 0.047 3.953 18 N -0.767 5.767 19 Si 0.936 3.064 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.263 1.263 23 C -0.076 4.076 24 N -0.509 5.509 25 C 0.028 3.972 26 C -0.123 4.123 27 C -0.132 4.132 28 C 0.037 3.963 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.413 0.587 35 H 0.409 0.591 36 H 0.178 0.822 37 H 0.276 0.724 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -6.788 23.048 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 H 0.070 0.930 4 C 0.001 3.999 5 N -0.359 5.359 6 C 0.297 3.703 7 O -0.403 6.403 8 C 0.265 3.735 9 O -0.401 6.401 10 N -0.225 5.225 11 C -0.176 4.176 12 C -0.202 4.202 13 N -0.092 5.092 14 N 0.095 4.905 15 C -0.455 4.455 16 H 0.136 0.864 17 C -0.171 4.171 18 N -0.394 5.394 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.228 4.228 24 N -0.234 5.234 25 C -0.100 4.100 26 C -0.161 4.161 27 C -0.171 4.171 28 C -0.090 4.090 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.244 0.756 36 H 0.194 0.806 37 H 0.086 0.914 38 H 0.167 0.833 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.130 -6.243 22.199 23.272 hybrid contribution 0.756 0.150 -0.215 0.800 sum 3.886 -6.093 21.984 23.142 Atomic orbital electron populations 1.21902 0.93239 1.03255 1.02211 1.22000 0.96812 0.95943 0.90014 0.93004 1.21403 1.00640 0.95598 0.82241 1.45651 1.53192 1.31583 1.05455 1.20266 0.80424 0.84852 0.84730 1.90739 1.36796 1.26171 1.86572 1.19624 0.83643 0.86202 0.84069 1.90655 1.37579 1.26260 1.85629 1.42143 1.48216 1.28286 1.03878 1.17258 1.14009 1.01589 0.84713 1.24142 1.02694 0.96766 0.96593 1.78259 1.18293 1.13799 0.98838 1.44563 1.26919 1.13574 1.05457 1.19940 1.29069 1.19182 0.77301 0.86406 1.25672 0.95186 0.94752 1.01487 1.70217 1.21581 1.10995 1.36558 0.85786 0.79436 0.78406 0.80399 1.19575 1.20052 1.18704 1.21312 1.11245 1.00823 0.89402 1.64753 1.09074 1.48595 1.01026 1.23330 0.88033 1.01137 0.97462 1.22476 0.98476 1.00966 0.94221 1.22412 0.95792 1.00415 0.98434 1.22859 0.99035 0.96965 0.90188 0.91258 0.92212 0.91608 0.90195 0.90794 0.75069 0.75565 0.80565 0.91362 0.83319 0.89503 0.93439 0.90986 0.90586 0.91505 0.90914 0.93535 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.02 37.16 0.34 -0.79 16 2 C 0.06 0.50 1.88 -67.72 -0.13 0.37 16 3 H 0.05 0.42 7.98 -51.93 -0.41 0.01 16 4 C 0.12 1.24 5.03 -4.04 -0.02 1.22 16 5 N -0.70 -8.33 5.33 -60.78 -0.32 -8.65 16 6 C 0.52 7.82 7.88 -11.66 -0.09 7.73 16 7 O -0.53 -8.76 16.47 5.48 0.09 -8.67 16 8 C 0.48 8.73 7.85 -11.65 -0.09 8.64 16 9 O -0.52 -10.50 13.62 5.44 0.07 -10.42 16 10 N -0.58 -11.00 5.45 -10.45 -0.06 -11.06 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 12 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 13 N -0.26 -7.48 10.41 30.81 0.32 -7.16 16 14 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 15 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 16 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.13 11.83 55.50 0.66 -20.47 16 19 Si 0.94 18.67 29.56 -169.99 -5.02 13.65 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 24 N -0.51 -3.98 5.11 -222.51 -1.14 -5.12 16 25 C 0.03 0.20 5.38 -1.90 -0.01 0.19 16 26 C -0.12 -0.72 7.06 -24.87 -0.18 -0.89 16 27 C -0.13 -0.73 6.93 -25.38 -0.18 -0.90 16 28 C 0.04 0.24 5.48 -2.76 -0.02 0.23 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.40 7.26 -51.93 -0.38 0.02 16 31 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.76 6.64 -51.93 -0.34 0.42 16 34 H 0.41 4.51 7.00 -40.82 -0.29 4.23 16 35 H 0.41 6.67 8.29 -40.82 -0.34 6.34 16 36 H 0.18 4.42 5.92 -52.48 -0.31 4.11 16 37 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.15 2.93 8.06 -52.49 -0.42 2.50 16 39 H 0.09 0.64 7.53 -51.93 -0.39 0.25 16 40 H 0.05 0.35 8.01 -51.93 -0.42 -0.07 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 0.30 7.63 -51.93 -0.40 -0.10 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -32.23 378.90 -7.88 -40.10 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.57 Total: 12.63 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.57 Total: 3.27 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.58 Total: -56.27 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.23 -7.88 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319349353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.796 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds